RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 EFCAB5A4FU69 1503 aa8.76□□□□□ -1.01
EPHA4-202ENST00000409854 VPS8Q8N3P4 1428 aa8.76□□□□□ -1.01
EPHA4-202ENST00000409854 SAMD9Q5K651 1589 aa8.75□□□□□ -1.01
EPHA4-202ENST00000409854 GRIN2AQ12879 1464 aa8.73□□□□□ -1.01
EPHA4-202ENST00000409854 SYNJ2O15056 1496 aa8.73□□□□□ -1.01
EPHA4-202ENST00000409854 IQGAP2Q13576 1575 aa8.73□□□□□ -1.01
EPHA4-202ENST00000409854 CEP170Q5SW79 1584 aa8.7□□□□□ -1.02
EPHA4-202ENST00000409854 CHD1O14646 1710 aa8.7□□□□□ -1.02
EPHA4-202ENST00000409854 UGGT2Q9NYU1 1516 aa8.69□□□□□ -1.02
EPHA4-202ENST00000409854 KIAA0586Q9BVV6 1533 aa8.68□□□□□ -1.02
EPHA4-202ENST00000409854 NUP160Q12769 1436 aa8.68□□□□□ -1.02
EPHA4-202ENST00000409854 CFAP43Q8NDM7 1665 aa8.67□□□□□ -1.02
EPHA4-202ENST00000409854 PCF11O94913 1555 aaKnown RBP8.67□□□□□ -1.02
EPHA4-202ENST00000409854 MAP3K1Q13233 1512 aa8.66□□□□□ -1.02
EPHA4-202ENST00000409854 MYT1Q01538 1121 aa8.66□□□□□ -1.02
EPHA4-202ENST00000409854 LRRIQ1Q96JM4 1722 aa8.65□□□□□ -1.02
EPHA4-202ENST00000409854 KIAA0556O60303 1618 aa8.65□□□□□ -1.02
EPHA4-202ENST00000409854 RANGAP1P46060 587 aaPredicted RBP8.64□□□□□ -1.03
EPHA4-202ENST00000409854 FHOD3Q2V2M9 1422 aa8.64□□□□□ -1.03
EPHA4-202ENST00000409854 FYCO1Q9BQS8 1478 aa8.64□□□□□ -1.03
EPHA4-202ENST00000409854 TIAM1Q13009 1591 aa8.64□□□□□ -1.03
EPHA4-202ENST00000409854 TRIM26Q12899 539 aaPredicted RBP8.64□□□□□ -1.03
EPHA4-202ENST00000409854 DISP1Q96F81 1524 aa8.63□□□□□ -1.03
EPHA4-202ENST00000409854 FMN1Q68DA7 1419 aa8.62□□□□□ -1.03
EPHA4-202ENST00000409854 SHROOM2Q13796 1616 aa8.62□□□□□ -1.03
EPHA4-202ENST00000409854 CASKIN1Q8WXD9 1431 aa8.62□□□□□ -1.03
EPHA4-202ENST00000409854 CHMP7Q8WUX9 453 aaPredicted RBP8.61□□□□□ -1.03
EPHA4-202ENST00000409854 PELP1Q8IZL8 1130 aaKnown RBP8.61□□□□□ -1.03
EPHA4-202ENST00000409854 HECW1Q76N89 1606 aa8.59□□□□□ -1.03
EPHA4-202ENST00000409854 CLASP1Q7Z460 1538 aa8.59□□□□□ -1.03
EPHA4-202ENST00000409854 PCGF6Q9BYE7 350 aa8.58□□□□□ -1.04
EPHA4-202ENST00000409854 PPARGC1BQ86YN6 1023 aaKnown RBP8.57□□□□□ -1.04
EPHA4-202ENST00000409854 RAPGEF6Q8TEU7 1601 aa8.56□□□□□ -1.04
EPHA4-202ENST00000409854 P3H3Q8IVL6 736 aa8.56□□□□□ -1.04
EPHA4-202ENST00000409854 LRRC9Q6ZRR7 1453 aa8.56□□□□□ -1.04
EPHA4-202ENST00000409854 APLP2Q06481 763 aa8.56□□□□□ -1.04
EPHA4-202ENST00000409854 CCDC18Q5T9S5 1454 aa8.55□□□□□ -1.04
EPHA4-202ENST00000409854 FBLN2P98095 1184 aa8.55□□□□□ -1.04
EPHA4-202ENST00000409854 CARMIL2Q6F5E8 1435 aa8.54□□□□□ -1.04
EPHA4-202ENST00000409854 KANK4Q5T7N3 995 aaPredicted RBP8.53□□□□□ -1.04
EPHA4-202ENST00000409854 ABCA8O94911 1581 aa8.52□□□□□ -1.04
EPHA4-202ENST00000409854 JPH4Q96JJ6 628 aa8.52□□□□□ -1.05
EPHA4-202ENST00000409854 EHBP1L1Q8N3D4 1523 aa8.52□□□□□ -1.05
EPHA4-202ENST00000409854 EPRSP07814 1512 aaKnown RBP8.52□□□□□ -1.05
EPHA4-202ENST00000409854 SUPT6HQ7KZ85 1726 aaKnown RBP8.51□□□□□ -1.05
EPHA4-202ENST00000409854 NUP153P49790 1475 aaKnown RBP8.51□□□□□ -1.05
EPHA4-202ENST00000409854 RRBP1Q9P2E9 1410 aaKnown RBP8.51□□□□□ -1.05
EPHA4-202ENST00000409854 MAGI3Q5TCQ9 1506 aa8.51□□□□□ -1.05
EPHA4-202ENST00000409854 PRG4Q92954 1404 aaPredicted RBP8.5□□□□□ -1.05
EPHA4-202ENST00000409854 ARHGEF11O15085 1522 aa8.5□□□□□ -1.05
EPHA4-202ENST00000409854 ERCC6L2Q5T890 1561 aa8.49□□□□□ -1.05
EPHA4-202ENST00000409854 CDK13Q14004 1512 aaKnown RBP8.49□□□□□ -1.05
EPHA4-202ENST00000409854 TTBK1Q5TCY1 1321 aaPredicted RBP8.48□□□□□ -1.05
EPHA4-202ENST00000409854 ADCY10Q96PN6 1610 aa8.48□□□□□ -1.05
EPHA4-202ENST00000409854 PLB1Q6P1J6 1458 aa8.48□□□□□ -1.05
EPHA4-202ENST00000409854 PHLDB1Q86UU1 1377 aa8.45□□□□□ -1.06
EPHA4-202ENST00000409854 NCOA2Q15596 1464 aa8.45□□□□□ -1.06
EPHA4-202ENST00000409854 MTUS2Q5JR59 1369 aa8.44□□□□□ -1.06
EPHA4-202ENST00000409854 ATP1B4Q9UN42 357 aaPredicted RBP8.44□□□□□ -1.06
EPHA4-202ENST00000409854 CCNB3Q8WWL7 1395 aa8.44□□□□□ -1.06
EPHA4-202ENST00000409854 PTPRGP23470 1445 aa8.44□□□□□ -1.06
EPHA4-202ENST00000409854 ABCC2Q92887 1545 aa8.44□□□□□ -1.06
EPHA4-202ENST00000409854 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.43□□□□□ -1.06
EPHA4-202ENST00000409854 UHRF1BP1LA0JNW5 1464 aa8.42□□□□□ -1.06
EPHA4-202ENST00000409854 UACAQ9BZF9 1416 aa8.42□□□□□ -1.06
EPHA4-202ENST00000409854 ITSN2Q9NZM3 1697 aa8.42□□□□□ -1.06
EPHA4-202ENST00000409854 MYOM3Q5VTT5 1437 aa8.42□□□□□ -1.06
EPHA4-202ENST00000409854 ATP10BO94823 1461 aa8.41□□□□□ -1.06
EPHA4-202ENST00000409854 PTPN23Q9H3S7 1636 aa8.41□□□□□ -1.06
EPHA4-202ENST00000409854 TROQ12816 1431 aaPredicted RBP8.41□□□□□ -1.06
EPHA4-202ENST00000409854 FGD6Q6ZV73 1430 aa8.41□□□□□ -1.06
EPHA4-202ENST00000409854 KIF14Q15058 1648 aa8.41□□□□□ -1.06
EPHA4-202ENST00000409854 ZCCHC11Q5TAX3 1644 aaKnown RBP8.4□□□□□ -1.06
EPHA4-202ENST00000409854 TCOF1Q13428 1488 aaKnown RBP8.4□□□□□ -1.06
EPHA4-202ENST00000409854 CDC42BPAQ5VT25 1732 aa8.4□□□□□ -1.07
EPHA4-202ENST00000409854 MIA2Q96PC5 1412 aa8.38□□□□□ -1.07
EPHA4-202ENST00000409854 KDM5BQ9UGL1 1544 aa8.38□□□□□ -1.07
EPHA4-202ENST00000409854 OSCARQ8IYS5 282 aa8.38□□□□□ -1.07
EPHA4-202ENST00000409854 ABCC10Q5T3U5 1492 aa8.37□□□□□ -1.07
EPHA4-202ENST00000409854 HRCP23327 699 aa8.37□□□□□ -1.07
EPHA4-202ENST00000409854 CDK11AQ9UQ88 783 aaPredicted RBP8.37□□□□□ -1.07
EPHA4-202ENST00000409854 PREX2Q70Z35 1606 aa8.35□□□□□ -1.07
EPHA4-202ENST00000409854 CROCC2H7BZ55 1655 aa8.35□□□□□ -1.07
EPHA4-202ENST00000409854 CDC42BPBQ9Y5S2 1711 aa8.35□□□□□ -1.07
EPHA4-202ENST00000409854 DNMT1P26358 1616 aaKnown RBP8.35□□□□□ -1.07
EPHA4-202ENST00000409854 GCC2Q8IWJ2 1684 aa8.34□□□□□ -1.07
EPHA4-202ENST00000409854 ARID3CA6NKF2 412 aa8.34□□□□□ -1.07
EPHA4-202ENST00000409854 MYO5CQ9NQX4 1742 aa8.34□□□□□ -1.07
EPHA4-202ENST00000409854 GPATCH8Q9UKJ3 1502 aaKnown RBP8.34□□□□□ -1.07
EPHA4-202ENST00000409854 HNRNPUL2Q1KMD3 747 aaKnown RBP8.34□□□□□ -1.07
EPHA4-202ENST00000409854 TTC37Q6PGP7 1564 aa8.33□□□□□ -1.08
EPHA4-202ENST00000409854 ADGBQ8N7X0 1667 aa8.32□□□□□ -1.08
EPHA4-202ENST00000409854 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.32□□□□□ -1.08
EPHA4-202ENST00000409854 PLEKHD1A6NEE1 506 aa8.31□□□□□ -1.08
EPHA4-202ENST00000409854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.31□□□□□ -1.08
EPHA4-202ENST00000409854 CAMSAP2Q08AD1 1489 aa8.31□□□□□ -1.08
EPHA4-202ENST00000409854 PTPRKQ15262 1439 aa8.31□□□□□ -1.08
EPHA4-202ENST00000409854 AKNAQ7Z591 1439 aa8.31□□□□□ -1.08
EPHA4-202ENST00000409854 RIMBP3CA6NJZ7 1639 aa8.31□□□□□ -1.08
EPHA4-202ENST00000409854 RIMBP3BA6NNM3 1639 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms