RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 PRXQ9BXM0 1461 aa37.52■■■■□ 3.6
PTCD3-203ENST00000409783 KIAA0586Q9BVV6 1533 aa37.46■■■■□ 3.59
PTCD3-203ENST00000409783 CSRNP3Q8WYN3 585 aa37.46■■■■□ 3.59
PTCD3-203ENST00000409783 ARAP1Q96P48 1450 aa37.39■■■■□ 3.58
PTCD3-203ENST00000409783 ERCC6L2Q5T890 1561 aa37.38■■■■□ 3.58
PTCD3-203ENST00000409783 JPH4Q96JJ6 628 aa37.36■■■■□ 3.57
PTCD3-203ENST00000409783 FAM9AQ8IZU1 332 aaPredicted RBP37.34■■■■□ 3.57
PTCD3-203ENST00000409783 PRG4Q92954 1404 aaPredicted RBP37.28■■■■□ 3.56
PTCD3-203ENST00000409783 IQGAP2Q13576 1575 aa37.28■■■■□ 3.56
PTCD3-203ENST00000409783 CYB5RLQ6IPT4 315 aa37.24■■■■□ 3.55
PTCD3-203ENST00000409783 CTTNBP2Q8WZ74 1663 aa37.23■■■■□ 3.55
PTCD3-203ENST00000409783 KIF21BO75037 1637 aa37.18■■■■□ 3.54
PTCD3-203ENST00000409783 UGGT2Q9NYU1 1516 aa37.1■■■■□ 3.53
PTCD3-203ENST00000409783 DISP1Q96F81 1524 aa37.04■■■■□ 3.52
PTCD3-203ENST00000409783 CARMIL2Q6F5E8 1435 aa36.99■■■■□ 3.51
PTCD3-203ENST00000409783 KIAA0556O60303 1618 aa36.94■■■■□ 3.5
PTCD3-203ENST00000409783 GOLGA3Q08378 1498 aa36.93■■■■□ 3.5
PTCD3-203ENST00000409783 TNIKQ9UKE5 1360 aa36.89■■■■□ 3.5
PTCD3-203ENST00000409783 PTPRGP23470 1445 aa36.85■■■■□ 3.49
PTCD3-203ENST00000409783 EHMT2Q96KQ7 1210 aa36.82■■■■□ 3.48
PTCD3-203ENST00000409783 SAMD9Q5K651 1589 aa36.78■■■■□ 3.48
PTCD3-203ENST00000409783 ADCY10Q96PN6 1610 aa36.75■■■■□ 3.47
PTCD3-203ENST00000409783 UBTFP17480 764 aaKnown RBP36.75■■■■□ 3.47
PTCD3-203ENST00000409783 TTBK1Q5TCY1 1321 aaPredicted RBP36.71■■■■□ 3.47
PTCD3-203ENST00000409783 UACAQ9BZF9 1416 aa36.62■■■■□ 3.45
PTCD3-203ENST00000409783 P3H3Q8IVL6 736 aa36.62■■■■□ 3.45
PTCD3-203ENST00000409783 UHRF1BP1LA0JNW5 1464 aa36.62■■■■□ 3.45
PTCD3-203ENST00000409783 RANGAP1P46060 587 aaPredicted RBP36.61■■■■□ 3.45
PTCD3-203ENST00000409783 EFCAB5A4FU69 1503 aa36.59■■■■□ 3.45
PTCD3-203ENST00000409783 ABCC2Q92887 1545 aa36.58■■■■□ 3.45
PTCD3-203ENST00000409783 PLB1Q6P1J6 1458 aa36.55■■■■□ 3.44
PTCD3-203ENST00000409783 ABCA8O94911 1581 aa36.54■■■■□ 3.44
PTCD3-203ENST00000409783 FHOD3Q2V2M9 1422 aa36.51■■■■□ 3.44
PTCD3-203ENST00000409783 ARHGAP35Q9NRY4 1499 aa36.48■■■■□ 3.43
PTCD3-203ENST00000409783 MAPKBP1O60336 1514 aa36.46■■■■□ 3.43
PTCD3-203ENST00000409783 NPM1P06748 294 aaKnown RBP eCLIP36.46■■■■□ 3.43
PTCD3-203ENST00000409783 KDM5BQ9UGL1 1544 aa36.45■■■■□ 3.43
PTCD3-203ENST00000409783 ZCCHC11Q5TAX3 1644 aaKnown RBP36.37■■■■□ 3.41
PTCD3-203ENST00000409783 TRHP20396 242 aaPredicted RBP36.36■■■■□ 3.41
PTCD3-203ENST00000409783 RAPGEF6Q8TEU7 1601 aa36.36■■■■□ 3.41
PTCD3-203ENST00000409783 LOC105371045A0A1W2PR82 267 aa36.32■■■■□ 3.4
PTCD3-203ENST00000409783 KIF13AQ9H1H9 1805 aa36.29■■■■□ 3.4
PTCD3-203ENST00000409783 ASXL2Q76L83 1435 aa36.27■■■■□ 3.4
PTCD3-203ENST00000409783 CLIP1P30622 1438 aa36.26■■■■□ 3.4
PTCD3-203ENST00000409783 ABCC10Q5T3U5 1492 aa36.26■■■■□ 3.4
PTCD3-203ENST00000409783 NUP153P49790 1475 aaKnown RBP36.24■■■■□ 3.39
PTCD3-203ENST00000409783 DIP2BQ9P265 1576 aa36.23■■■■□ 3.39
PTCD3-203ENST00000409783 FMN1Q68DA7 1419 aa36.23■■■■□ 3.39
PTCD3-203ENST00000409783 ATP10BO94823 1461 aa36.23■■■■□ 3.39
PTCD3-203ENST00000409783 CEP162Q5TB80 1403 aa36.16■■■■□ 3.38
PTCD3-203ENST00000409783 ARID3CA6NKF2 412 aa36.14■■■■□ 3.38
PTCD3-203ENST00000409783 FAM69CQ0P6D2 419 aa36.12■■■■□ 3.37
PTCD3-203ENST00000409783 WDR7Q9Y4E6 1490 aa36.11■■■■□ 3.37
PTCD3-203ENST00000409783 EPRSP07814 1512 aaKnown RBP36.08■■■■□ 3.37
PTCD3-203ENST00000409783 GLI2P10070 1586 aa36.07■■■■□ 3.37
PTCD3-203ENST00000409783 HECW1Q76N89 1606 aa36.06■■■■□ 3.36
PTCD3-203ENST00000409783 PCF11O94913 1555 aaKnown RBP36.02■■■■□ 3.36
PTCD3-203ENST00000409783 CASKIN1Q8WXD9 1431 aa36■■■■□ 3.35
PTCD3-203ENST00000409783 LRRIQ1Q96JM4 1722 aa36■■■■□ 3.35
PTCD3-203ENST00000409783 CDK13Q14004 1512 aaKnown RBP35.99■■■■□ 3.35
PTCD3-203ENST00000409783 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.94■■■■□ 3.34
PTCD3-203ENST00000409783 HNRNPUL2Q1KMD3 747 aaKnown RBP35.94■■■■□ 3.34
PTCD3-203ENST00000409783 ATP1B4Q9UN42 357 aaPredicted RBP35.92■■■■□ 3.34
PTCD3-203ENST00000409783 MAP3K4Q9Y6R4 1608 aa35.92■■■■□ 3.34
PTCD3-203ENST00000409783 FYCO1Q9BQS8 1478 aa35.92■■■■□ 3.34
PTCD3-203ENST00000409783 KCNH8Q96L42 1107 aa35.9■■■■□ 3.34
PTCD3-203ENST00000409783 TSPOAP1O95153 1857 aa35.9■■■■□ 3.34
PTCD3-203ENST00000409783 PPRC1Q5VV67 1664 aaKnown RBP35.88■■■■□ 3.33
PTCD3-203ENST00000409783 PLEKHD1A6NEE1 506 aa35.84■■■■□ 3.33
PTCD3-203ENST00000409783 CFAP43Q8NDM7 1665 aa35.83■■■■□ 3.33
PTCD3-203ENST00000409783 CCDC18Q5T9S5 1454 aa35.81■■■■□ 3.32
PTCD3-203ENST00000409783 ABCA9Q8IUA7 1624 aa35.8■■■■□ 3.32
PTCD3-203ENST00000409783 CD109Q6YHK3 1445 aa35.74■■■■□ 3.31
PTCD3-203ENST00000409783 VPS8Q8N3P4 1428 aa35.72■■■■□ 3.31
PTCD3-203ENST00000409783 CDK11AQ9UQ88 783 aaPredicted RBP35.71■■■■□ 3.31
PTCD3-203ENST00000409783 MAGI3Q5TCQ9 1506 aa35.71■■■■□ 3.31
PTCD3-203ENST00000409783 TROQ12816 1431 aaPredicted RBP35.69■■■■□ 3.3
PTCD3-203ENST00000409783 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.68■■■■□ 3.38e-6■□□□□ 8.1
PTCD3-203ENST00000409783 TEX14Q8IWB6 1497 aa35.65■■■■□ 3.3
PTCD3-203ENST00000409783 TTC37Q6PGP7 1564 aa35.64■■■■□ 3.3
PTCD3-203ENST00000409783 KIF14Q15058 1648 aa35.63■■■■□ 3.29
PTCD3-203ENST00000409783 KDM6BO15054 1643 aa35.56■■■■□ 3.28
PTCD3-203ENST00000409783 COL17A1Q9UMD9 1497 aaPredicted RBP35.52■■■■□ 3.28
PTCD3-203ENST00000409783 TIAM1Q13009 1591 aa35.48■■■■□ 3.27
PTCD3-203ENST00000409783 PLCH2O75038 1416 aa35.45■■■■□ 3.27
PTCD3-203ENST00000409783 NEO1Q92859 1461 aa35.45■■■■□ 3.27
PTCD3-203ENST00000409783 MYO5CQ9NQX4 1742 aa35.45■■■■□ 3.27
PTCD3-203ENST00000409783 MTUS2Q5JR59 1369 aa35.42■■■■□ 3.26
PTCD3-203ENST00000409783 MAP3K1Q13233 1512 aa35.42■■■■□ 3.26
PTCD3-203ENST00000409783 EHBP1L1Q8N3D4 1523 aa35.42■■■■□ 3.26
PTCD3-203ENST00000409783 ARAP3Q8WWN8 1544 aa35.41■■■■□ 3.26
PTCD3-203ENST00000409783 PHLDB1Q86UU1 1377 aa35.4■■■■□ 3.26
PTCD3-203ENST00000409783 FANCAO15360 1455 aa35.39■■■■□ 3.26
PTCD3-203ENST00000409783 CFAP74Q9C0B2 1584 aa35.36■■■■□ 3.25
PTCD3-203ENST00000409783 CDC42BPBQ9Y5S2 1711 aa35.35■■■■□ 3.25
PTCD3-203ENST00000409783 CDC42BPAQ5VT25 1732 aa35.35■■■■□ 3.25
PTCD3-203ENST00000409783 PREX2Q70Z35 1606 aa35.34■■■■□ 3.25
PTCD3-203ENST00000409783 AKNAQ7Z591 1439 aa35.32■■■■□ 3.25
PTCD3-203ENST00000409783 LRRC9Q6ZRR7 1453 aa35.32■■■■□ 3.24
PTCD3-203ENST00000409783 GPATCH8Q9UKJ3 1502 aaKnown RBP35.27■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms