RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 ARAP1Q96P48 1450 aa25.18■■□□□ 1.62
NIF3L1-205ENST00000409588 ADAMTS12P58397 1594 aa25.16■■□□□ 1.62
NIF3L1-205ENST00000409588 NUP160Q12769 1436 aa25.13■■□□□ 1.61
NIF3L1-205ENST00000409588 KIF27Q86VH2 1401 aa25.09■■□□□ 1.61
NIF3L1-205ENST00000409588 IGF1RP08069 1367 aa25.04■■□□□ 1.6
NIF3L1-205ENST00000409588 CEP170Q5SW79 1584 aa25.01■■□□□ 1.59
NIF3L1-205ENST00000409588 JPH4Q96JJ6 628 aa24.97■■□□□ 1.59
NIF3L1-205ENST00000409588 TRHP20396 242 aaPredicted RBP24.94■■□□□ 1.58
NIF3L1-205ENST00000409588 SHROOM2Q13796 1616 aa24.94■■□□□ 1.58
NIF3L1-205ENST00000409588 CUL7Q14999 1698 aa24.91■■□□□ 1.58
NIF3L1-205ENST00000409588 CARMIL1Q5VZK9 1371 aa24.87■■□□□ 1.57
NIF3L1-205ENST00000409588 PRG4Q92954 1404 aaPredicted RBP24.86■■□□□ 1.57
NIF3L1-205ENST00000409588 KIAA0586Q9BVV6 1533 aa24.85■■□□□ 1.57
NIF3L1-205ENST00000409588 ERCC6L2Q5T890 1561 aa24.82■■□□□ 1.56
NIF3L1-205ENST00000409588 RUSC2Q8N2Y8 1516 aa24.79■■□□□ 1.56
NIF3L1-205ENST00000409588 NPM1P06748 294 aaKnown RBP eCLIP24.68■■□□□ 1.54
NIF3L1-205ENST00000409588 RAPGEF2Q9Y4G8 1499 aa24.66■■□□□ 1.54
NIF3L1-205ENST00000409588 CARMIL2Q6F5E8 1435 aa24.64■■□□□ 1.54
NIF3L1-205ENST00000409588 PTPRGP23470 1445 aa24.57■■□□□ 1.52
NIF3L1-205ENST00000409588 IQGAP2Q13576 1575 aa24.57■■□□□ 1.52
NIF3L1-205ENST00000409588 TNIKQ9UKE5 1360 aa24.55■■□□□ 1.52
NIF3L1-205ENST00000409588 MAPKBP1O60336 1514 aa24.46■■□□□ 1.51
NIF3L1-205ENST00000409588 UGGT2Q9NYU1 1516 aa24.46■■□□□ 1.51
NIF3L1-205ENST00000409588 PRXQ9BXM0 1461 aa24.46■■□□□ 1.51
NIF3L1-205ENST00000409588 ADCY10Q96PN6 1610 aa24.44■■□□□ 1.5
NIF3L1-205ENST00000409588 CSRNP3Q8WYN3 585 aa24.44■■□□□ 1.5
NIF3L1-205ENST00000409588 DISP1Q96F81 1524 aa24.42■■□□□ 1.5
NIF3L1-205ENST00000409588 ABCC10Q5T3U5 1492 aa24.41■■□□□ 1.5
NIF3L1-205ENST00000409588 FAM69CQ0P6D2 419 aa24.41■■□□□ 1.5
NIF3L1-205ENST00000409588 EEA1Q15075 1411 aa24.41■■□□□ 1.5
NIF3L1-205ENST00000409588 UHRF1BP1LA0JNW5 1464 aa24.39■■□□□ 1.5
NIF3L1-205ENST00000409588 GOLGA3Q08378 1498 aa24.38■■□□□ 1.49
NIF3L1-205ENST00000409588 TTBK1Q5TCY1 1321 aaPredicted RBP24.37■■□□□ 1.49
NIF3L1-205ENST00000409588 UACAQ9BZF9 1416 aa24.37■■□□□ 1.49
NIF3L1-205ENST00000409588 FAM9AQ8IZU1 332 aaPredicted RBP24.37■■□□□ 1.49
NIF3L1-205ENST00000409588 ABCC2Q92887 1545 aa24.36■■□□□ 1.49
NIF3L1-205ENST00000409588 KIF13AQ9H1H9 1805 aa24.32■■□□□ 1.48
NIF3L1-205ENST00000409588 CTTNBP2Q8WZ74 1663 aa24.31■■□□□ 1.48
NIF3L1-205ENST00000409588 KIAA0556O60303 1618 aa24.3■■□□□ 1.48
NIF3L1-205ENST00000409588 PLB1Q6P1J6 1458 aa24.29■■□□□ 1.48
NIF3L1-205ENST00000409588 DIP2BQ9P265 1576 aa24.26■■□□□ 1.47
NIF3L1-205ENST00000409588 KDM5BQ9UGL1 1544 aa24.25■■□□□ 1.47
NIF3L1-205ENST00000409588 ASXL2Q76L83 1435 aa24.22■■□□□ 1.47
NIF3L1-205ENST00000409588 GLI2P10070 1586 aa24.16■■□□□ 1.46
NIF3L1-205ENST00000409588 ABCA8O94911 1581 aa24.09■■□□□ 1.45
NIF3L1-205ENST00000409588 ZCCHC11Q5TAX3 1644 aaKnown RBP24.08■■□□□ 1.45
NIF3L1-205ENST00000409588 EPRSP07814 1512 aaKnown RBP24.08■■□□□ 1.45
NIF3L1-205ENST00000409588 P3H3Q8IVL6 736 aa24.06■■□□□ 1.44
NIF3L1-205ENST00000409588 KIF21BO75037 1637 aa24.04■■□□□ 1.44
NIF3L1-205ENST00000409588 WDR7Q9Y4E6 1490 aa24.04■■□□□ 1.44
NIF3L1-205ENST00000409588 SAMD9Q5K651 1589 aa24.03■■□□□ 1.44
NIF3L1-205ENST00000409588 TSPOAP1O95153 1857 aa24■■□□□ 1.43
NIF3L1-205ENST00000409588 TEX14Q8IWB6 1497 aa24■■□□□ 1.43
NIF3L1-205ENST00000409588 KDM6BO15054 1643 aa23.99■■□□□ 1.43
NIF3L1-205ENST00000409588 UBTFP17480 764 aaKnown RBP23.96■■□□□ 1.43
NIF3L1-205ENST00000409588 KCNH8Q96L42 1107 aa23.96■■□□□ 1.43
NIF3L1-205ENST00000409588 MAP3K4Q9Y6R4 1608 aa23.95■■□□□ 1.43
NIF3L1-205ENST00000409588 ATP10BO94823 1461 aa23.94■■□□□ 1.42
NIF3L1-205ENST00000409588 EFCAB5A4FU69 1503 aa23.93■■□□□ 1.42
NIF3L1-205ENST00000409588 RANGAP1P46060 587 aaPredicted RBP23.92■■□□□ 1.42
NIF3L1-205ENST00000409588 CD109Q6YHK3 1445 aa23.91■■□□□ 1.42
NIF3L1-205ENST00000409588 MAPK8IP2Q13387 824 aaPredicted RBP23.9■■□□□ 1.42
NIF3L1-205ENST00000409588 PPRC1Q5VV67 1664 aaKnown RBP23.89■■□□□ 1.42
NIF3L1-205ENST00000409588 RAPGEF6Q8TEU7 1601 aa23.88■■□□□ 1.41
NIF3L1-205ENST00000409588 MAGI3Q5TCQ9 1506 aa23.88■■□□□ 1.41
NIF3L1-205ENST00000409588 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.87■■□□□ 1.41
NIF3L1-205ENST00000409588 HNRNPUL2Q1KMD3 747 aaKnown RBP23.87■■□□□ 1.41
NIF3L1-205ENST00000409588 CFAP43Q8NDM7 1665 aa23.86■■□□□ 1.41
NIF3L1-205ENST00000409588 FHOD3Q2V2M9 1422 aa23.85■■□□□ 1.41
NIF3L1-205ENST00000409588 PLEKHD1A6NEE1 506 aa23.83■■□□□ 1.41
NIF3L1-205ENST00000409588 ARID3CA6NKF2 412 aa23.83■■□□□ 1.41
NIF3L1-205ENST00000409588 PHLDB1Q86UU1 1377 aa23.82■■□□□ 1.4
NIF3L1-205ENST00000409588 NUP153P49790 1475 aaKnown RBP23.81■■□□□ 1.4
NIF3L1-205ENST00000409588 COL17A1Q9UMD9 1497 aaPredicted RBP23.78■■□□□ 1.4
NIF3L1-205ENST00000409588 FMN1Q68DA7 1419 aa23.77■■□□□ 1.4
NIF3L1-205ENST00000409588 EHMT2Q96KQ7 1210 aa23.74■■□□□ 1.39
NIF3L1-205ENST00000409588 DMRT2Q9Y5R5 561 aa23.73■■□□□ 1.39
NIF3L1-205ENST00000409588 ABCA9Q8IUA7 1624 aa23.73■■□□□ 1.39
NIF3L1-205ENST00000409588 ARAP3Q8WWN8 1544 aa23.7■■□□□ 1.38
NIF3L1-205ENST00000409588 CDK11AQ9UQ88 783 aaPredicted RBP23.7■■□□□ 1.38
NIF3L1-205ENST00000409588 ARHGAP35Q9NRY4 1499 aa23.69■■□□□ 1.38
NIF3L1-205ENST00000409588 KDM4FA0A1W2PPD8 638 aa23.68■■□□□ 1.38
NIF3L1-205ENST00000409588 NEO1Q92859 1461 aa23.66■■□□□ 1.38
NIF3L1-205ENST00000409588 ATP1B4Q9UN42 357 aaPredicted RBP23.63■■□□□ 1.37
NIF3L1-205ENST00000409588 SCAF1Q9H7N4 1312 aaKnown RBP23.6■■□□□ 1.37
NIF3L1-205ENST00000409588 HECW1Q76N89 1606 aa23.59■■□□□ 1.37
NIF3L1-205ENST00000409588 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.54■■□□□ 1.36
NIF3L1-205ENST00000409588 CDK13Q14004 1512 aaKnown RBP23.53■■□□□ 1.36
NIF3L1-205ENST00000409588 RAPGEF3O95398 923 aa23.52■■□□□ 1.36
NIF3L1-205ENST00000409588 AKNAQ7Z591 1439 aa23.5■■□□□ 1.35
NIF3L1-205ENST00000409588 CASKIN1Q8WXD9 1431 aa23.5■■□□□ 1.35
NIF3L1-205ENST00000409588 ADGRL1O94910 1474 aa23.5■■□□□ 1.35
NIF3L1-205ENST00000409588 PLCH2O75038 1416 aa23.5■■□□□ 1.35
NIF3L1-205ENST00000409588 FANCAO15360 1455 aa23.49■■□□□ 1.35
NIF3L1-205ENST00000409588 CFAP74Q9C0B2 1584 aa23.48■■□□□ 1.35
NIF3L1-205ENST00000409588 CLIP1P30622 1438 aa23.48■■□□□ 1.35
NIF3L1-205ENST00000409588 EFCAB2Q5VUJ9 269 aa23.47■■□□□ 1.35
NIF3L1-205ENST00000409588 DENND4BO75064 1496 aaPredicted RBP23.47■■□□□ 1.35
NIF3L1-205ENST00000409588 TROQ12816 1431 aaPredicted RBP23.46■■□□□ 1.35
NIF3L1-205ENST00000409588 CCDC18Q5T9S5 1454 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms