RNA–Protein interactions for RNA: ENST00000409472.5

SCAMP4-202, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2 BASIC

Gene SCAMP4, Length 2,394 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-202ENST00000409472 TIAM1Q13009 1591 aa22.88■■□□□ 1.25
SCAMP4-202ENST00000409472 TARBP1Q13395 1621 aaKnown RBP22.87■■□□□ 1.25
SCAMP4-202ENST00000409472 FHOD3Q2V2M9 1422 aa22.87■■□□□ 1.25
SCAMP4-202ENST00000409472 GAPVD1Q14C86 1478 aa22.87■■□□□ 1.25
SCAMP4-202ENST00000409472 RRBP1Q9P2E9 1410 aaKnown RBP22.84■■□□□ 1.25
SCAMP4-202ENST00000409472 CFAP43Q8NDM7 1665 aa22.78■■□□□ 1.24
SCAMP4-202ENST00000409472 EFCAB5A4FU69 1503 aa22.77■■□□□ 1.24
SCAMP4-202ENST00000409472 LRRC9Q6ZRR7 1453 aa22.76■■□□□ 1.23
SCAMP4-202ENST00000409472 MAP3K1Q13233 1512 aa22.76■■□□□ 1.23
SCAMP4-202ENST00000409472 FHAD1B1AJZ9 1412 aa22.75■■□□□ 1.23
SCAMP4-202ENST00000409472 MRC2Q9UBG0 1479 aa22.75■■□□□ 1.23
SCAMP4-202ENST00000409472 CCNB3Q8WWL7 1395 aa22.74■■□□□ 1.23
SCAMP4-202ENST00000409472 PBRM1Q86U86 1689 aa22.74■■□□□ 1.23
SCAMP4-202ENST00000409472 AQRO60306 1485 aaKnown RBP eCLIP22.72■■□□□ 1.233e-7■■■■■ 45.3
SCAMP4-202ENST00000409472 ATP1B4Q9UN42 357 aaPredicted RBP22.71■■□□□ 1.23
SCAMP4-202ENST00000409472 PHLDB1Q86UU1 1377 aa22.69■■□□□ 1.22
SCAMP4-202ENST00000409472 FYCO1Q9BQS8 1478 aa22.68■■□□□ 1.22
SCAMP4-202ENST00000409472 SAMD9Q5K651 1589 aa22.68■■□□□ 1.22
SCAMP4-202ENST00000409472 ITGAEP38570 1179 aa22.68■■□□□ 1.22
SCAMP4-202ENST00000409472 CASKIN1Q8WXD9 1431 aa22.66■■□□□ 1.22
SCAMP4-202ENST00000409472 SNAPC4Q5SXM2 1469 aa22.65■■□□□ 1.22
SCAMP4-202ENST00000409472 SCAF1Q9H7N4 1312 aaKnown RBP22.65■■□□□ 1.22
SCAMP4-202ENST00000409472 DHX57Q6P158 1386 aaKnown RBP22.65■■□□□ 1.22
SCAMP4-202ENST00000409472 ZNF608Q9ULD9 1512 aaPredicted RBP22.63■■□□□ 1.21
SCAMP4-202ENST00000409472 LRRIQ1Q96JM4 1722 aa22.63■■□□□ 1.21
SCAMP4-202ENST00000409472 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
SCAMP4-202ENST00000409472 WDR62O43379 1518 aa22.61■■□□□ 1.21
SCAMP4-202ENST00000409472 FMN1Q68DA7 1419 aa22.58■■□□□ 1.21
SCAMP4-202ENST00000409472 GRIN2BQ13224 1484 aa22.53■■□□□ 1.2
SCAMP4-202ENST00000409472 DIEXFQ68CQ4 756 aaKnown RBP22.53■■□□□ 1.2
SCAMP4-202ENST00000409472 IFT140Q96RY7 1462 aa22.53■■□□□ 1.2
SCAMP4-202ENST00000409472 FAM50AQ14320 339 aaKnown RBP22.5■■□□□ 1.19
SCAMP4-202ENST00000409472 IQGAP2Q13576 1575 aa22.5■■□□□ 1.19
SCAMP4-202ENST00000409472 RAB3GAP2Q9H2M9 1393 aa22.49■■□□□ 1.19
SCAMP4-202ENST00000409472 ERCC6Q03468 1493 aa22.49■■□□□ 1.19
SCAMP4-202ENST00000409472 EIF4G3O43432 1585 aaKnown RBP22.49■■□□□ 1.19
SCAMP4-202ENST00000409472 ZNF316A6NFI3 1004 aaPredicted RBP22.48■■□□□ 1.19
SCAMP4-202ENST00000409472 THOC2Q8NI27 1593 aaKnown RBP22.48■■□□□ 1.19
SCAMP4-202ENST00000409472 MTUS2Q5JR59 1369 aa22.42■■□□□ 1.18
SCAMP4-202ENST00000409472 MAGI3Q5TCQ9 1506 aa22.42■■□□□ 1.18
SCAMP4-202ENST00000409472 CLSPNQ9HAW4 1339 aa22.41■■□□□ 1.18
SCAMP4-202ENST00000409472 MAPKBP1O60336 1514 aa22.4■■□□□ 1.18
SCAMP4-202ENST00000409472 FGD6Q6ZV73 1430 aa22.39■■□□□ 1.17
SCAMP4-202ENST00000409472 SETD5Q9C0A6 1442 aa22.38■■□□□ 1.17
SCAMP4-202ENST00000409472 NCOA2Q15596 1464 aa22.37■■□□□ 1.17
SCAMP4-202ENST00000409472 GRIN2AQ12879 1464 aa22.34■■□□□ 1.17
SCAMP4-202ENST00000409472 UGGT2Q9NYU1 1516 aa22.34■■□□□ 1.17
SCAMP4-202ENST00000409472 EHBP1L1Q8N3D4 1523 aa22.33■■□□□ 1.17
SCAMP4-202ENST00000409472 CDK13Q14004 1512 aaKnown RBP22.33■■□□□ 1.17
SCAMP4-202ENST00000409472 HECW1Q76N89 1606 aa22.33■■□□□ 1.16
SCAMP4-202ENST00000409472 SUPT6HQ7KZ85 1726 aaKnown RBP22.32■■□□□ 1.16
SCAMP4-202ENST00000409472 ARID3CA6NKF2 412 aa22.32■■□□□ 1.16
SCAMP4-202ENST00000409472 PTPRKQ15262 1439 aa22.3■■□□□ 1.16
SCAMP4-202ENST00000409472 DISP1Q96F81 1524 aa22.3■■□□□ 1.16
SCAMP4-202ENST00000409472 KIAA0556O60303 1618 aa22.29■■□□□ 1.16
SCAMP4-202ENST00000409472 EPRSP07814 1512 aaKnown RBP22.29■■□□□ 1.16
SCAMP4-202ENST00000409472 MYOM3Q5VTT5 1437 aa22.28■■□□□ 1.16
SCAMP4-202ENST00000409472 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.28■■□□□ 1.169e-7■■■□□ 16.5
SCAMP4-202ENST00000409472 KIAA0586Q9BVV6 1533 aa22.28■■□□□ 1.16
SCAMP4-202ENST00000409472 CCDC18Q5T9S5 1454 aa22.28■■□□□ 1.16
SCAMP4-202ENST00000409472 ARHGEF11O15085 1522 aa22.27■■□□□ 1.16
SCAMP4-202ENST00000409472 CEP170Q5SW79 1584 aa22.26■■□□□ 1.15
SCAMP4-202ENST00000409472 MAGI1Q96QZ7 1491 aaPredicted RBP22.23■■□□□ 1.15
SCAMP4-202ENST00000409472 PTPN23Q9H3S7 1636 aa22.22■■□□□ 1.15
SCAMP4-202ENST00000409472 SYNJ2O15056 1496 aa22.2■■□□□ 1.14
SCAMP4-202ENST00000409472 FBLN2P98095 1184 aa22.18■■□□□ 1.14
SCAMP4-202ENST00000409472 SIN3AQ96ST3 1273 aa22.17■■□□□ 1.14
SCAMP4-202ENST00000409472 NUP153P49790 1475 aaKnown RBP22.16■■□□□ 1.14
SCAMP4-202ENST00000409472 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
SCAMP4-202ENST00000409472 MIER1Q8N108 512 aa22.16■■□□□ 1.14
SCAMP4-202ENST00000409472 RAPGEF6Q8TEU7 1601 aa22.14■■□□□ 1.13
SCAMP4-202ENST00000409472 HFM1A2PYH4 1435 aa22.14■■□□□ 1.13
SCAMP4-202ENST00000409472 NAIPQ13075 1403 aa22.11■■□□□ 1.13
SCAMP4-202ENST00000409472 TCOF1Q13428 1488 aaKnown RBP22.1■■□□□ 1.13
SCAMP4-202ENST00000409472 NEUROD1Q13562 356 aa22.1■■□□□ 1.13
SCAMP4-202ENST00000409472 NUP160Q12769 1436 aa22.09■■□□□ 1.13
SCAMP4-202ENST00000409472 ACIN1Q9UKV3 1341 aaKnown RBP22.08■■□□□ 1.13
SCAMP4-202ENST00000409472 PLB1Q6P1J6 1458 aa22.08■■□□□ 1.13
SCAMP4-202ENST00000409472 CHIC2Q9UKJ5 165 aa22.05■■□□□ 1.12
SCAMP4-202ENST00000409472 KDM6BO15054 1643 aa22.04■■□□□ 1.12
SCAMP4-202ENST00000409472 RRP7BPQ9NSQ0 103 aa22.03■■□□□ 1.12
SCAMP4-202ENST00000409472 UACAQ9BZF9 1416 aa22.01■■□□□ 1.11
SCAMP4-202ENST00000409472 YTHDC1Q96MU7 727 aaKnown RBP22.01■■□□□ 1.11
SCAMP4-202ENST00000409472 GCC2Q8IWJ2 1684 aa22.01■■□□□ 1.11
SCAMP4-202ENST00000409472 PRG4Q92954 1404 aaPredicted RBP21.99■■□□□ 1.11
SCAMP4-202ENST00000409472 MIA2Q96PC5 1412 aa21.99■■□□□ 1.11
SCAMP4-202ENST00000409472 JPH4Q96JJ6 628 aa21.99■■□□□ 1.11
SCAMP4-202ENST00000409472 ZNF644Q9H582 1327 aaPredicted RBP21.97■■□□□ 1.11
SCAMP4-202ENST00000409472 KIF14Q15058 1648 aa21.96■■□□□ 1.11
SCAMP4-202ENST00000409472 DENND4BO75064 1496 aaPredicted RBP21.94■■□□□ 1.1
SCAMP4-202ENST00000409472 CARMIL2Q6F5E8 1435 aa21.93■■□□□ 1.1
SCAMP4-202ENST00000409472 TROQ12816 1431 aaPredicted RBP21.91■■□□□ 1.1
SCAMP4-202ENST00000409472 CHD1O14646 1710 aa21.9■■□□□ 1.1
SCAMP4-202ENST00000409472 DNMT1P26358 1616 aaKnown RBP21.9■■□□□ 1.1
SCAMP4-202ENST00000409472 DAPK1P53355 1430 aa21.9■■□□□ 1.1
SCAMP4-202ENST00000409472 AKNAQ7Z591 1439 aa21.89■■□□□ 1.1
SCAMP4-202ENST00000409472 CENPBP07199 599 aaPredicted RBP21.89■■□□□ 1.1
SCAMP4-202ENST00000409472 ABCA8O94911 1581 aa21.88■■□□□ 1.09
SCAMP4-202ENST00000409472 ABCC5O15440 1437 aa21.88■■□□□ 1.09
SCAMP4-202ENST00000409472 ADCY10Q96PN6 1610 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms