RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 VPS8Q8N3P4 1428 aa12.94□□□□□ -0.34
LIG4-202ENST00000405925 IGF1RP08069 1367 aa12.93□□□□□ -0.34
LIG4-202ENST00000405925 SLC4A1APQ9BWU0 796 aaKnown RBP12.92□□□□□ -0.34
LIG4-202ENST00000405925 CARMIL2Q6F5E8 1435 aa12.91□□□□□ -0.34
LIG4-202ENST00000405925 GAPVD1Q14C86 1478 aa12.91□□□□□ -0.34
LIG4-202ENST00000405925 DIEXFQ68CQ4 756 aaKnown RBP12.91□□□□□ -0.34
LIG4-202ENST00000405925 JPH4Q96JJ6 628 aa12.9□□□□□ -0.34
LIG4-202ENST00000405925 ESF1Q9H501 851 aaKnown RBP12.9□□□□□ -0.34
LIG4-202ENST00000405925 PELP1Q8IZL8 1130 aaKnown RBP12.9□□□□□ -0.34
LIG4-202ENST00000405925 KANK4Q5T7N3 995 aaPredicted RBP12.89□□□□□ -0.35
LIG4-202ENST00000405925 FHOD3Q2V2M9 1422 aa12.89□□□□□ -0.35
LIG4-202ENST00000405925 AQRO60306 1485 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIG4-202ENST00000405925 SYNJ1O43426 1573 aa12.87□□□□□ -0.35
LIG4-202ENST00000405925 CHGAP10645 457 aaKnown RBP12.86□□□□□ -0.35
LIG4-202ENST00000405925 TONSLQ96HA7 1378 aa12.86□□□□□ -0.35
LIG4-202ENST00000405925 PLPPR3Q6T4P5 718 aa12.86□□□□□ -0.35
LIG4-202ENST00000405925 FMN1Q68DA7 1419 aa12.86□□□□□ -0.35
LIG4-202ENST00000405925 PEG3Q9GZU2 1588 aa12.85□□□□□ -0.35
LIG4-202ENST00000405925 CCNB3Q8WWL7 1395 aa12.84□□□□□ -0.35
LIG4-202ENST00000405925 TOPBP1Q92547 1522 aa12.83□□□□□ -0.35
LIG4-202ENST00000405925 BCANQ96GW7 911 aa12.83□□□□□ -0.36
LIG4-202ENST00000405925 MRC2Q9UBG0 1479 aa12.83□□□□□ -0.36
LIG4-202ENST00000405925 CUX1P39880 1505 aa12.82□□□□□ -0.36
LIG4-202ENST00000405925 ZNF316A6NFI3 1004 aaPredicted RBP12.81□□□□□ -0.36
LIG4-202ENST00000405925 POLA1P09884 1462 aaPredicted RBP12.81□□□□□ -0.36
LIG4-202ENST00000405925 STAG3Q9UJ98 1225 aa12.79□□□□□ -0.36
LIG4-202ENST00000405925 NEFLP07196 543 aa12.77□□□□□ -0.37
LIG4-202ENST00000405925 TOP2BQ02880 1626 aa12.76□□□□□ -0.37
LIG4-202ENST00000405925 LAMC3Q9Y6N6 1575 aa12.76□□□□□ -0.37
LIG4-202ENST00000405925 OSCARQ8IYS5 282 aa12.75□□□□□ -0.37
LIG4-202ENST00000405925 GRIN2BQ13224 1484 aa12.75□□□□□ -0.37
LIG4-202ENST00000405925 ARHGAP35Q9NRY4 1499 aa12.74□□□□□ -0.37
LIG4-202ENST00000405925 KDM2AQ9Y2K7 1162 aa12.74□□□□□ -0.37
LIG4-202ENST00000405925 DNMBPQ6XZF7 1577 aa12.73□□□□□ -0.37
LIG4-202ENST00000405925 IFT140Q96RY7 1462 aa12.72□□□□□ -0.37
LIG4-202ENST00000405925 PTPRGP23470 1445 aa12.72□□□□□ -0.37
LIG4-202ENST00000405925 TRHP20396 242 aaPredicted RBP12.71□□□□□ -0.37
LIG4-202ENST00000405925 ANP32CO43423 234 aa12.7□□□□□ -0.38
LIG4-202ENST00000405925 CYB5RLQ6IPT4 315 aa12.68□□□□□ -0.38
LIG4-202ENST00000405925 ARID4BQ4LE39 1312 aaPredicted RBP12.68□□□□□ -0.38
LIG4-202ENST00000405925 RGL3Q3MIN7 710 aa12.68□□□□□ -0.38
LIG4-202ENST00000405925 PRXQ9BXM0 1461 aa12.67□□□□□ -0.38
LIG4-202ENST00000405925 EFCAB2Q5VUJ9 269 aa12.67□□□□□ -0.38
LIG4-202ENST00000405925 SENP3Q9H4L4 574 aaPredicted RBP12.66□□□□□ -0.38
LIG4-202ENST00000405925 SIN3AQ96ST3 1273 aa12.65□□□□□ -0.38
LIG4-202ENST00000405925 HIRIP3Q9BW71 556 aaPredicted RBP12.64□□□□□ -0.39
LIG4-202ENST00000405925 URB2Q14146 1524 aaKnown RBP12.64□□□□□ -0.39
LIG4-202ENST00000405925 SNAPC4Q5SXM2 1469 aa12.63□□□□□ -0.39
LIG4-202ENST00000405925 CCDC18Q5T9S5 1454 aa12.63□□□□□ -0.39
LIG4-202ENST00000405925 KIF21BO75037 1637 aa12.63□□□□□ -0.39
LIG4-202ENST00000405925 ERICH3Q5RHP9 1530 aa12.63□□□□□ -0.39
LIG4-202ENST00000405925 ABCA10Q8WWZ4 1543 aa12.63□□□□□ -0.39
LIG4-202ENST00000405925 ACIN1Q9UKV3 1341 aaKnown RBP12.62□□□□□ -0.39
LIG4-202ENST00000405925 DDX10Q13206 875 aaKnown RBP12.62□□□□□ -0.39
LIG4-202ENST00000405925 HNRNPMP52272 730 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIG4-202ENST00000405925 SETD5Q9C0A6 1442 aa12.59□□□□□ -0.39
LIG4-202ENST00000405925 MLECQ14165 292 aa12.59□□□□□ -0.39
LIG4-202ENST00000405925 ARAP1Q96P48 1450 aa12.59□□□□□ -0.39
LIG4-202ENST00000405925 GGT6Q6P531 493 aa12.57□□□□□ -0.4
LIG4-202ENST00000405925 RAB3GAP2Q9H2M9 1393 aa12.56□□□□□ -0.4
LIG4-202ENST00000405925 PRG4Q92954 1404 aaPredicted RBP12.56□□□□□ -0.4
LIG4-202ENST00000405925 PPP1R15AO75807 674 aaPredicted RBP12.56□□□□□ -0.4
LIG4-202ENST00000405925 EIF4G2P78344 907 aaKnown RBP eCLIP12.55□□□□□ -0.4
LIG4-202ENST00000405925 ZNF608Q9ULD9 1512 aaPredicted RBP12.55□□□□□ -0.4
LIG4-202ENST00000405925 FOXD1Q16676 465 aa12.55□□□□□ -0.4
LIG4-202ENST00000405925 ANKRD30AQ9BXX3 1397 aa12.54□□□□□ -0.4
LIG4-202ENST00000405925 PKD2Q13563 968 aa12.53□□□□□ -0.4
LIG4-202ENST00000405925 CLSPNQ9HAW4 1339 aa12.53□□□□□ -0.4
LIG4-202ENST00000405925 SPAG9O60271 1321 aaKnown RBP12.52□□□□□ -0.4
LIG4-202ENST00000405925 NUP155O75694 1391 aa12.51□□□□□ -0.41
LIG4-202ENST00000405925 CASKIN1Q8WXD9 1431 aa12.51□□□□□ -0.41
LIG4-202ENST00000405925 KANK1Q14678 1352 aa12.5□□□□□ -0.41
LIG4-202ENST00000405925 KIF3BO15066 747 aa12.5□□□□□ -0.41
LIG4-202ENST00000405925 RSPH4AQ5TD94 716 aa12.5□□□□□ -0.41
LIG4-202ENST00000405925 MPHOSPH9Q99550 1183 aa12.49□□□□□ -0.41
LIG4-202ENST00000405925 PRDM2Q13029 1718 aa12.49□□□□□ -0.41
LIG4-202ENST00000405925 ZNF644Q9H582 1327 aaPredicted RBP12.49□□□□□ -0.41
LIG4-202ENST00000405925 KIAA0586Q9BVV6 1533 aa12.48□□□□□ -0.41
LIG4-202ENST00000405925 BIVM-ERCC5R4GMW8 1640 aa12.48□□□□□ -0.41
LIG4-202ENST00000405925 PHLDB1Q86UU1 1377 aa12.48□□□□□ -0.41
LIG4-202ENST00000405925 CARD11Q9BXL7 1154 aa12.47□□□□□ -0.41
LIG4-202ENST00000405925 DCAF11Q8TEB1 546 aa12.47□□□□□ -0.41
LIG4-202ENST00000405925 LRRC9Q6ZRR7 1453 aa12.47□□□□□ -0.41
LIG4-202ENST00000405925 SYNJ2O15056 1496 aa12.47□□□□□ -0.41
LIG4-202ENST00000405925 EFCAB5A4FU69 1503 aa12.46□□□□□ -0.42
LIG4-202ENST00000405925 GRIN2AQ12879 1464 aa12.44□□□□□ -0.42
LIG4-202ENST00000405925 MAGI1Q96QZ7 1491 aaPredicted RBP12.44□□□□□ -0.42
LIG4-202ENST00000405925 FYCO1Q9BQS8 1478 aa12.44□□□□□ -0.42
LIG4-202ENST00000405925 FGD6Q6ZV73 1430 aa12.44□□□□□ -0.42
LIG4-202ENST00000405925 FAM69CQ0P6D2 419 aa12.44□□□□□ -0.42
LIG4-202ENST00000405925 MYOM3Q5VTT5 1437 aa12.43□□□□□ -0.42
LIG4-202ENST00000405925 NCOA2Q15596 1464 aa12.42□□□□□ -0.42
LIG4-202ENST00000405925 IQGAP2Q13576 1575 aa12.41□□□□□ -0.42
LIG4-202ENST00000405925 CUL7Q14999 1698 aa12.41□□□□□ -0.42
LIG4-202ENST00000405925 NEFMP07197 916 aa12.41□□□□□ -0.42
LIG4-202ENST00000405925 FAM9BQ8IZU0 186 aa12.41□□□□□ -0.42
LIG4-202ENST00000405925 TMC1Q8TDI8 760 aa12.4□□□□□ -0.42
LIG4-202ENST00000405925 TIMELESSQ9UNS1 1208 aa12.4□□□□□ -0.42
LIG4-202ENST00000405925 MIER1Q8N108 512 aa12.39□□□□□ -0.43
LIG4-202ENST00000405925 WASHC2CQ9Y4E1 1318 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms