RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 MAGI1Q96QZ7 1491 aaPredicted RBP5.83□□□□□ -1.48
RTN4-208ENST00000404909 TTBK1Q5TCY1 1321 aaPredicted RBP5.82□□□□□ -1.48
RTN4-208ENST00000404909 SYNJ2O15056 1496 aa5.82□□□□□ -1.48
RTN4-208ENST00000404909 GRIN2AQ12879 1464 aa5.81□□□□□ -1.48
RTN4-208ENST00000404909 ARHGAP35Q9NRY4 1499 aa5.81□□□□□ -1.48
RTN4-208ENST00000404909 ARAP1Q96P48 1450 aa5.8□□□□□ -1.48
RTN4-208ENST00000404909 APLP2Q06481 763 aa5.8□□□□□ -1.48
RTN4-208ENST00000404909 ATP1B4Q9UN42 357 aaPredicted RBP5.8□□□□□ -1.48
RTN4-208ENST00000404909 VPS8Q8N3P4 1428 aa5.79□□□□□ -1.48
RTN4-208ENST00000404909 CTTNBP2Q8WZ74 1663 aa5.79□□□□□ -1.48
RTN4-208ENST00000404909 FHOD3Q2V2M9 1422 aa5.79□□□□□ -1.48
RTN4-208ENST00000404909 KIAA0586Q9BVV6 1533 aa5.78□□□□□ -1.48
RTN4-208ENST00000404909 IQGAP2Q13576 1575 aa5.78□□□□□ -1.48
RTN4-208ENST00000404909 JPH4Q96JJ6 628 aa5.77□□□□□ -1.49
RTN4-208ENST00000404909 PCGF6Q9BYE7 350 aa5.77□□□□□ -1.49
RTN4-208ENST00000404909 CEP170Q5SW79 1584 aa5.77□□□□□ -1.49
RTN4-208ENST00000404909 NUP160Q12769 1436 aa5.76□□□□□ -1.49
RTN4-208ENST00000404909 EFCAB5A4FU69 1503 aa5.76□□□□□ -1.49
RTN4-208ENST00000404909 CHD1O14646 1710 aa5.75□□□□□ -1.49
RTN4-208ENST00000404909 ARID3CA6NKF2 412 aa5.74□□□□□ -1.49
RTN4-208ENST00000404909 TRIM26Q12899 539 aaPredicted RBP5.74□□□□□ -1.49
RTN4-208ENST00000404909 FMN1Q68DA7 1419 aa5.74□□□□□ -1.49
RTN4-208ENST00000404909 UGGT2Q9NYU1 1516 aa5.73□□□□□ -1.49
RTN4-208ENST00000404909 SAMD9Q5K651 1589 aa5.73□□□□□ -1.49
RTN4-208ENST00000404909 KANK4Q5T7N3 995 aaPredicted RBP5.73□□□□□ -1.49
RTN4-208ENST00000404909 DISP1Q96F81 1524 aa5.73□□□□□ -1.49
RTN4-208ENST00000404909 CARMIL2Q6F5E8 1435 aa5.72□□□□□ -1.49
RTN4-208ENST00000404909 PRG4Q92954 1404 aaPredicted RBP5.72□□□□□ -1.49
RTN4-208ENST00000404909 OSCARQ8IYS5 282 aa5.72□□□□□ -1.49
RTN4-208ENST00000404909 PCF11O94913 1555 aaKnown RBP5.71□□□□□ -1.49
RTN4-208ENST00000404909 KIAA0556O60303 1618 aa5.71□□□□□ -1.5
RTN4-208ENST00000404909 CASKIN1Q8WXD9 1431 aa5.71□□□□□ -1.5
RTN4-208ENST00000404909 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.71□□□□□ -1.5
RTN4-208ENST00000404909 HNRNPUL2Q1KMD3 747 aaKnown RBP5.71□□□□□ -1.5
RTN4-208ENST00000404909 FYCO1Q9BQS8 1478 aa5.7□□□□□ -1.5
RTN4-208ENST00000404909 PTPRGP23470 1445 aa5.69□□□□□ -1.5
RTN4-208ENST00000404909 PLB1Q6P1J6 1458 aa5.68□□□□□ -1.5
RTN4-208ENST00000404909 TIAM1Q13009 1591 aa5.68□□□□□ -1.5
RTN4-208ENST00000404909 MTUS2Q5JR59 1369 aa5.67□□□□□ -1.5
RTN4-208ENST00000404909 CLASP1Q7Z460 1538 aa5.67□□□□□ -1.5
RTN4-208ENST00000404909 ERCC6L2Q5T890 1561 aa5.67□□□□□ -1.5
RTN4-208ENST00000404909 LRRC9Q6ZRR7 1453 aa5.67□□□□□ -1.5
RTN4-208ENST00000404909 EPRSP07814 1512 aaKnown RBP5.66□□□□□ -1.5
RTN4-208ENST00000404909 CDK13Q14004 1512 aaKnown RBP5.66□□□□□ -1.5
RTN4-208ENST00000404909 SHROOM2Q13796 1616 aa5.66□□□□□ -1.5
RTN4-208ENST00000404909 HECW1Q76N89 1606 aa5.66□□□□□ -1.5
RTN4-208ENST00000404909 MAP3K1Q13233 1512 aa5.66□□□□□ -1.5
RTN4-208ENST00000404909 NUP153P49790 1475 aaKnown RBP5.65□□□□□ -1.5
RTN4-208ENST00000404909 CCDC18Q5T9S5 1454 aa5.65□□□□□ -1.5
RTN4-208ENST00000404909 RAPGEF6Q8TEU7 1601 aa5.65□□□□□ -1.5
RTN4-208ENST00000404909 CDK11AQ9UQ88 783 aaPredicted RBP5.65□□□□□ -1.5
RTN4-208ENST00000404909 AEBP2Q6ZN18 517 aaPredicted RBP5.64□□□□□ -1.51
RTN4-208ENST00000404909 CFAP43Q8NDM7 1665 aa5.64□□□□□ -1.51
RTN4-208ENST00000404909 ITGAEP38570 1179 aa5.64□□□□□ -1.51
RTN4-208ENST00000404909 UACAQ9BZF9 1416 aa5.64□□□□□ -1.51
RTN4-208ENST00000404909 LRRIQ1Q96JM4 1722 aa5.64□□□□□ -1.51
RTN4-208ENST00000404909 PHLDB1Q86UU1 1377 aa5.63□□□□□ -1.51
RTN4-208ENST00000404909 FAM50AQ14320 339 aaKnown RBP5.63□□□□□ -1.51
RTN4-208ENST00000404909 PLEKHD1A6NEE1 506 aa5.63□□□□□ -1.51
RTN4-208ENST00000404909 ABCA8O94911 1581 aa5.62□□□□□ -1.51
RTN4-208ENST00000404909 MAGI3Q5TCQ9 1506 aa5.62□□□□□ -1.51
RTN4-208ENST00000404909 ATP10BO94823 1461 aa5.62□□□□□ -1.51
RTN4-208ENST00000404909 CCNB3Q8WWL7 1395 aa5.62□□□□□ -1.51
RTN4-208ENST00000404909 NCOA2Q15596 1464 aa5.61□□□□□ -1.51
RTN4-208ENST00000404909 EHBP1L1Q8N3D4 1523 aa5.61□□□□□ -1.51
RTN4-208ENST00000404909 KCNH8Q96L42 1107 aa5.6□□□□□ -1.51
RTN4-208ENST00000404909 CYB5RLQ6IPT4 315 aa5.6□□□□□ -1.51
RTN4-208ENST00000404909 TROQ12816 1431 aaPredicted RBP5.6□□□□□ -1.51
RTN4-208ENST00000404909 RRBP1Q9P2E9 1410 aaKnown RBP5.6□□□□□ -1.51
RTN4-208ENST00000404909 ABCC2Q92887 1545 aa5.6□□□□□ -1.51
RTN4-208ENST00000404909 SUPT6HQ7KZ85 1726 aaKnown RBP5.59□□□□□ -1.51
RTN4-208ENST00000404909 MYOM3Q5VTT5 1437 aa5.59□□□□□ -1.52
RTN4-208ENST00000404909 NPM1P06748 294 aaKnown RBP eCLIP5.59□□□□□ -1.52
RTN4-208ENST00000404909 ZNF777Q9ULD5 760 aaPredicted RBP5.59□□□□□ -1.52
RTN4-208ENST00000404909 ARHGEF11O15085 1522 aa5.58□□□□□ -1.52
RTN4-208ENST00000404909 FGD6Q6ZV73 1430 aa5.58□□□□□ -1.52
RTN4-208ENST00000404909 CFDP1Q9UEE9 299 aaPredicted RBP5.58□□□□□ -1.52
RTN4-208ENST00000404909 UHRF1BP1LA0JNW5 1464 aa5.57□□□□□ -1.52
RTN4-208ENST00000404909 ZNF644Q9H582 1327 aaPredicted RBP5.56□□□□□ -1.52
RTN4-208ENST00000404909 KDM5BQ9UGL1 1544 aa5.56□□□□□ -1.52
RTN4-208ENST00000404909 KIF14Q15058 1648 aa5.56□□□□□ -1.52
RTN4-208ENST00000404909 ADCY10Q96PN6 1610 aa5.56□□□□□ -1.52
RTN4-208ENST00000404909 CCER1Q8TC90 406 aaPredicted RBP5.55□□□□□ -1.52
RTN4-208ENST00000404909 CHIC2Q9UKJ5 165 aa5.55□□□□□ -1.52
RTN4-208ENST00000404909 ZCCHC11Q5TAX3 1644 aaKnown RBP5.55□□□□□ -1.52
RTN4-208ENST00000404909 GPATCH8Q9UKJ3 1502 aaKnown RBP5.55□□□□□ -1.52
RTN4-208ENST00000404909 RIMBP3CA6NJZ7 1639 aa5.54□□□□□ -1.52
RTN4-208ENST00000404909 RIMBP3BA6NNM3 1639 aa5.54□□□□□ -1.52
RTN4-208ENST00000404909 RIMBP3Q9UFD9 1639 aa5.54□□□□□ -1.52
RTN4-208ENST00000404909 MIA2Q96PC5 1412 aa5.54□□□□□ -1.52
RTN4-208ENST00000404909 PTPN23Q9H3S7 1636 aa5.54□□□□□ -1.52
RTN4-208ENST00000404909 ASXL2Q76L83 1435 aa5.54□□□□□ -1.52
RTN4-208ENST00000404909 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.53□□□□□ -1.52
RTN4-208ENST00000404909 ABCC10Q5T3U5 1492 aa5.53□□□□□ -1.52
RTN4-208ENST00000404909 WDR7Q9Y4E6 1490 aa5.53□□□□□ -1.52
RTN4-208ENST00000404909 RRP7BPQ9NSQ0 103 aa5.53□□□□□ -1.52
RTN4-208ENST00000404909 PTPRKQ15262 1439 aa5.52□□□□□ -1.53
RTN4-208ENST00000404909 HNRNPMP52272 730 aaKnown RBP eCLIP5.52□□□□□ -1.537e-7■■■■□ 22.8
RTN4-208ENST00000404909 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.52□□□□□ -1.537e-15■■□□□ 12
RTN4-208ENST00000404909 HRCP23327 699 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms