RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 ADAMTS12P58397 1594 aa18.51■□□□□ 0.55
SKA3-203ENST00000400018 FHAD1B1AJZ9 1412 aa18.51■□□□□ 0.55
SKA3-203ENST00000400018 CUL7Q14999 1698 aa18.48■□□□□ 0.55
SKA3-203ENST00000400018 ARAP1Q96P48 1450 aa18.46■□□□□ 0.55
SKA3-203ENST00000400018 FHOD3Q2V2M9 1422 aa18.45■□□□□ 0.54
SKA3-203ENST00000400018 ARHGAP35Q9NRY4 1499 aa18.44■□□□□ 0.54
SKA3-203ENST00000400018 GRIN2AQ12879 1464 aa18.43■□□□□ 0.54
SKA3-203ENST00000400018 SYNJ2O15056 1496 aa18.4■□□□□ 0.54
SKA3-203ENST00000400018 PCGF6Q9BYE7 350 aa18.4■□□□□ 0.54
SKA3-203ENST00000400018 MAGI1Q96QZ7 1491 aaPredicted RBP18.38■□□□□ 0.53
SKA3-203ENST00000400018 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
SKA3-203ENST00000400018 CHD1O14646 1710 aa18.36■□□□□ 0.53
SKA3-203ENST00000400018 CTTNBP2Q8WZ74 1663 aa18.34■□□□□ 0.53
SKA3-203ENST00000400018 JPH4Q96JJ6 628 aa18.32■□□□□ 0.52
SKA3-203ENST00000400018 KANK4Q5T7N3 995 aaPredicted RBP18.32■□□□□ 0.52
SKA3-203ENST00000400018 VPS8Q8N3P4 1428 aa18.29■□□□□ 0.52
SKA3-203ENST00000400018 IQGAP2Q13576 1575 aa18.28■□□□□ 0.52
SKA3-203ENST00000400018 KIAA0586Q9BVV6 1533 aa18.24■□□□□ 0.51
SKA3-203ENST00000400018 ERCC6L2Q5T890 1561 aa18.23■□□□□ 0.51
SKA3-203ENST00000400018 NUP160Q12769 1436 aa18.23■□□□□ 0.51
SKA3-203ENST00000400018 APLP2Q06481 763 aa18.23■□□□□ 0.51
SKA3-203ENST00000400018 DISP1Q96F81 1524 aa18.2■□□□□ 0.5
SKA3-203ENST00000400018 PRG4Q92954 1404 aaPredicted RBP18.18■□□□□ 0.5
SKA3-203ENST00000400018 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.18■□□□□ 0.5
SKA3-203ENST00000400018 HNRNPUL2Q1KMD3 747 aaKnown RBP18.18■□□□□ 0.5
SKA3-203ENST00000400018 PCF11O94913 1555 aaKnown RBP18.17■□□□□ 0.5
SKA3-203ENST00000400018 SAMD9Q5K651 1589 aa18.14■□□□□ 0.49
SKA3-203ENST00000400018 OSCARQ8IYS5 282 aa18.13■□□□□ 0.49
SKA3-203ENST00000400018 PLB1Q6P1J6 1458 aa18.13■□□□□ 0.49
SKA3-203ENST00000400018 KIAA0556O60303 1618 aa18.11■□□□□ 0.49
SKA3-203ENST00000400018 UGGT2Q9NYU1 1516 aa18.1■□□□□ 0.49
SKA3-203ENST00000400018 TRIM26Q12899 539 aaPredicted RBP18.09■□□□□ 0.49
SKA3-203ENST00000400018 EFCAB5A4FU69 1503 aa18.08■□□□□ 0.49
SKA3-203ENST00000400018 CDK13Q14004 1512 aaKnown RBP18.08■□□□□ 0.48
SKA3-203ENST00000400018 ITGAEP38570 1179 aa18.07■□□□□ 0.48
SKA3-203ENST00000400018 LRRIQ1Q96JM4 1722 aa18.06■□□□□ 0.48
SKA3-203ENST00000400018 FMN1Q68DA7 1419 aa18.04■□□□□ 0.48
SKA3-203ENST00000400018 CARMIL2Q6F5E8 1435 aa18.02■□□□□ 0.48
SKA3-203ENST00000400018 CASKIN1Q8WXD9 1431 aa18.01■□□□□ 0.47
SKA3-203ENST00000400018 CLASP1Q7Z460 1538 aa18.01■□□□□ 0.47
SKA3-203ENST00000400018 PTPRGP23470 1445 aa18.01■□□□□ 0.47
SKA3-203ENST00000400018 MAGI3Q5TCQ9 1506 aa17.97■□□□□ 0.47
SKA3-203ENST00000400018 TIAM1Q13009 1591 aa17.97■□□□□ 0.47
SKA3-203ENST00000400018 NUP153P49790 1475 aaKnown RBP17.96■□□□□ 0.47
SKA3-203ENST00000400018 FYCO1Q9BQS8 1478 aa17.95■□□□□ 0.46
SKA3-203ENST00000400018 MTUS2Q5JR59 1369 aa17.95■□□□□ 0.46
SKA3-203ENST00000400018 CYB5RLQ6IPT4 315 aa17.94■□□□□ 0.46
SKA3-203ENST00000400018 PHLDB1Q86UU1 1377 aa17.94■□□□□ 0.46
SKA3-203ENST00000400018 LRRC9Q6ZRR7 1453 aa17.93■□□□□ 0.46
SKA3-203ENST00000400018 EPRSP07814 1512 aaKnown RBP17.93■□□□□ 0.46
SKA3-203ENST00000400018 KCNH8Q96L42 1107 aa17.92■□□□□ 0.46
SKA3-203ENST00000400018 SHROOM2Q13796 1616 aa17.92■□□□□ 0.46
SKA3-203ENST00000400018 FAM50AQ14320 339 aaKnown RBP17.92■□□□□ 0.46
SKA3-203ENST00000400018 RAPGEF6Q8TEU7 1601 aa17.9■□□□□ 0.46
SKA3-203ENST00000400018 ATP10BO94823 1461 aa17.86■□□□□ 0.45
SKA3-203ENST00000400018 HECW1Q76N89 1606 aa17.85■□□□□ 0.45
SKA3-203ENST00000400018 CFAP43Q8NDM7 1665 aa17.84■□□□□ 0.45
SKA3-203ENST00000400018 UACAQ9BZF9 1416 aa17.83■□□□□ 0.45
SKA3-203ENST00000400018 ZNF644Q9H582 1327 aaPredicted RBP17.83■□□□□ 0.45
SKA3-203ENST00000400018 ZNF777Q9ULD5 760 aaPredicted RBP17.83■□□□□ 0.45
SKA3-203ENST00000400018 ABCA8O94911 1581 aa17.82■□□□□ 0.44
SKA3-203ENST00000400018 NCOA2Q15596 1464 aa17.79■□□□□ 0.44
SKA3-203ENST00000400018 ARHGEF11O15085 1522 aa17.79■□□□□ 0.44
SKA3-203ENST00000400018 PLEKHD1A6NEE1 506 aa17.79■□□□□ 0.44
SKA3-203ENST00000400018 CHIC2Q9UKJ5 165 aa17.77■□□□□ 0.44
SKA3-203ENST00000400018 KIF14Q15058 1648 aa17.76■□□□□ 0.43
SKA3-203ENST00000400018 CCNB3Q8WWL7 1395 aa17.74■□□□□ 0.43
SKA3-203ENST00000400018 CCDC18Q5T9S5 1454 aa17.74■□□□□ 0.43
SKA3-203ENST00000400018 ADCY10Q96PN6 1610 aa17.73■□□□□ 0.43
SKA3-203ENST00000400018 CDK11AQ9UQ88 783 aaPredicted RBP17.72■□□□□ 0.43
SKA3-203ENST00000400018 MAP3K1Q13233 1512 aa17.72■□□□□ 0.43
SKA3-203ENST00000400018 ABCC2Q92887 1545 aa17.71■□□□□ 0.43
SKA3-203ENST00000400018 RIMBP3CA6NJZ7 1639 aa17.7■□□□□ 0.42
SKA3-203ENST00000400018 RIMBP3BA6NNM3 1639 aa17.7■□□□□ 0.42
SKA3-203ENST00000400018 RIMBP3Q9UFD9 1639 aa17.7■□□□□ 0.42
SKA3-203ENST00000400018 DNAJC5Q9H3Z4 198 aa17.7■□□□□ 0.42
SKA3-203ENST00000400018 EHBP1L1Q8N3D4 1523 aa17.69■□□□□ 0.42
SKA3-203ENST00000400018 TROQ12816 1431 aaPredicted RBP17.68■□□□□ 0.42
SKA3-203ENST00000400018 ZCCHC11Q5TAX3 1644 aaKnown RBP17.67■□□□□ 0.42
SKA3-203ENST00000400018 FGD6Q6ZV73 1430 aa17.67■□□□□ 0.42
SKA3-203ENST00000400018 SUPT6HQ7KZ85 1726 aaKnown RBP17.66■□□□□ 0.42
SKA3-203ENST00000400018 RRBP1Q9P2E9 1410 aaKnown RBP17.66■□□□□ 0.42
SKA3-203ENST00000400018 CFDP1Q9UEE9 299 aaPredicted RBP17.66■□□□□ 0.42
SKA3-203ENST00000400018 MYOM3Q5VTT5 1437 aa17.65■□□□□ 0.42
SKA3-203ENST00000400018 RRP7BPQ9NSQ0 103 aa17.64■□□□□ 0.42
SKA3-203ENST00000400018 PTPRKQ15262 1439 aa17.64■□□□□ 0.41
SKA3-203ENST00000400018 NPM1P06748 294 aaKnown RBP eCLIP17.63■□□□□ 0.41
SKA3-203ENST00000400018 HNRNPMP52272 730 aaKnown RBP eCLIP17.63■□□□□ 0.41
SKA3-203ENST00000400018 KDM5BQ9UGL1 1544 aa17.6■□□□□ 0.41
SKA3-203ENST00000400018 ASXL2Q76L83 1435 aa17.59■□□□□ 0.41
SKA3-203ENST00000400018 CCER1Q8TC90 406 aaPredicted RBP17.59■□□□□ 0.41
SKA3-203ENST00000400018 GPATCH8Q9UKJ3 1502 aaKnown RBP17.59■□□□□ 0.41
SKA3-203ENST00000400018 TTC37Q6PGP7 1564 aa17.58■□□□□ 0.41
SKA3-203ENST00000400018 PTPN23Q9H3S7 1636 aa17.56■□□□□ 0.4
SKA3-203ENST00000400018 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.55■□□□□ 0.43e-6■■□□□ 13.1
SKA3-203ENST00000400018 UHRF1BP1LA0JNW5 1464 aa17.54■□□□□ 0.4
SKA3-203ENST00000400018 ABCC10Q5T3U5 1492 aa17.54■□□□□ 0.4
SKA3-203ENST00000400018 CDC42BPAQ5VT25 1732 aa17.51■□□□□ 0.39
SKA3-203ENST00000400018 WDR7Q9Y4E6 1490 aa17.5■□□□□ 0.39
SKA3-203ENST00000400018 CAMSAP2Q08AD1 1489 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms