RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 KIF27Q86VH2 1401 aa23.19■■□□□ 1.3
VCX3A-202ENST00000398729 FAM69CQ0P6D2 419 aa23.19■■□□□ 1.3
VCX3A-202ENST00000398729 ABCC10Q5T3U5 1492 aa23.12■■□□□ 1.29
VCX3A-202ENST00000398729 NPM1P06748 294 aaKnown RBP eCLIP23.12■■□□□ 1.29
VCX3A-202ENST00000398729 IGF1RP08069 1367 aa23.12■■□□□ 1.29
VCX3A-202ENST00000398729 CUL7Q14999 1698 aa23.09■■□□□ 1.29
VCX3A-202ENST00000398729 RUSC2Q8N2Y8 1516 aa23.07■■□□□ 1.28
VCX3A-202ENST00000398729 MAPKBP1O60336 1514 aa23.04■■□□□ 1.28
VCX3A-202ENST00000398729 ADCY10Q96PN6 1610 aa23.02■■□□□ 1.28
VCX3A-202ENST00000398729 KDM4FA0A1W2PPD8 638 aa23.01■■□□□ 1.27
VCX3A-202ENST00000398729 KIAA0586Q9BVV6 1533 aa23■■□□□ 1.27
VCX3A-202ENST00000398729 DIP2BQ9P265 1576 aa23■■□□□ 1.27
VCX3A-202ENST00000398729 CARMIL1Q5VZK9 1371 aa22.99■■□□□ 1.27
VCX3A-202ENST00000398729 PTPRGP23470 1445 aa22.89■■□□□ 1.25
VCX3A-202ENST00000398729 KDM6BO15054 1643 aa22.86■■□□□ 1.25
VCX3A-202ENST00000398729 TTBK1Q5TCY1 1321 aaPredicted RBP22.86■■□□□ 1.25
VCX3A-202ENST00000398729 TSPOAP1O95153 1857 aa22.86■■□□□ 1.25
VCX3A-202ENST00000398729 RAPGEF2Q9Y4G8 1499 aa22.81■■□□□ 1.24
VCX3A-202ENST00000398729 TNIKQ9UKE5 1360 aa22.79■■□□□ 1.24
VCX3A-202ENST00000398729 IQGAP2Q13576 1575 aa22.79■■□□□ 1.24
VCX3A-202ENST00000398729 ABCC2Q92887 1545 aa22.77■■□□□ 1.24
VCX3A-202ENST00000398729 ASXL2Q76L83 1435 aa22.75■■□□□ 1.23
VCX3A-202ENST00000398729 CARMIL2Q6F5E8 1435 aa22.74■■□□□ 1.23
VCX3A-202ENST00000398729 PLB1Q6P1J6 1458 aa22.72■■□□□ 1.23
VCX3A-202ENST00000398729 PPRC1Q5VV67 1664 aaKnown RBP22.69■■□□□ 1.22
VCX3A-202ENST00000398729 GLI2P10070 1586 aa22.69■■□□□ 1.22
VCX3A-202ENST00000398729 UHRF1BP1LA0JNW5 1464 aa22.69■■□□□ 1.22
VCX3A-202ENST00000398729 COL17A1Q9UMD9 1497 aaPredicted RBP22.69■■□□□ 1.22
VCX3A-202ENST00000398729 UACAQ9BZF9 1416 aa22.68■■□□□ 1.22
VCX3A-202ENST00000398729 DISP1Q96F81 1524 aa22.67■■□□□ 1.22
VCX3A-202ENST00000398729 ILDR1Q86SU0 546 aaPredicted RBP22.66■■□□□ 1.22
VCX3A-202ENST00000398729 UGGT2Q9NYU1 1516 aa22.64■■□□□ 1.21
VCX3A-202ENST00000398729 PRXQ9BXM0 1461 aa22.63■■□□□ 1.21
VCX3A-202ENST00000398729 CTTNBP2Q8WZ74 1663 aa22.62■■□□□ 1.21
VCX3A-202ENST00000398729 EPRSP07814 1512 aaKnown RBP22.61■■□□□ 1.21
VCX3A-202ENST00000398729 KDM5BQ9UGL1 1544 aa22.61■■□□□ 1.21
VCX3A-202ENST00000398729 ADGRL1O94910 1474 aa22.6■■□□□ 1.21
VCX3A-202ENST00000398729 KIAA0556O60303 1618 aa22.57■■□□□ 1.2
VCX3A-202ENST00000398729 CSRNP3Q8WYN3 585 aa22.54■■□□□ 1.2
VCX3A-202ENST00000398729 MAP3K4Q9Y6R4 1608 aa22.53■■□□□ 1.2
VCX3A-202ENST00000398729 EEA1Q15075 1411 aa22.52■■□□□ 1.2
VCX3A-202ENST00000398729 GOLGA3Q08378 1498 aa22.5■■□□□ 1.19
VCX3A-202ENST00000398729 ZCCHC11Q5TAX3 1644 aaKnown RBP22.49■■□□□ 1.19
VCX3A-202ENST00000398729 TEX14Q8IWB6 1497 aa22.47■■□□□ 1.19
VCX3A-202ENST00000398729 WDR7Q9Y4E6 1490 aa22.42■■□□□ 1.18
VCX3A-202ENST00000398729 KCNH8Q96L42 1107 aa22.42■■□□□ 1.18
VCX3A-202ENST00000398729 FAM9AQ8IZU1 332 aaPredicted RBP22.39■■□□□ 1.17
VCX3A-202ENST00000398729 CD109Q6YHK3 1445 aa22.39■■□□□ 1.17
VCX3A-202ENST00000398729 HECW2Q9P2P5 1572 aa22.38■■□□□ 1.17
VCX3A-202ENST00000398729 MAGI3Q5TCQ9 1506 aa22.36■■□□□ 1.17
VCX3A-202ENST00000398729 CHIC1Q5VXU3 224 aa22.35■■□□□ 1.17
VCX3A-202ENST00000398729 ABCA8O94911 1581 aa22.33■■□□□ 1.17
VCX3A-202ENST00000398729 P3H3Q8IVL6 736 aa22.31■■□□□ 1.16
VCX3A-202ENST00000398729 KIF21BO75037 1637 aa22.3■■□□□ 1.16
VCX3A-202ENST00000398729 SAMD9Q5K651 1589 aa22.29■■□□□ 1.16
VCX3A-202ENST00000398729 CFAP43Q8NDM7 1665 aa22.27■■□□□ 1.16
VCX3A-202ENST00000398729 ARID3CA6NKF2 412 aa22.23■■□□□ 1.15
VCX3A-202ENST00000398729 RANGAP1P46060 587 aaPredicted RBP22.23■■□□□ 1.15
VCX3A-202ENST00000398729 ATP10BO94823 1461 aa22.21■■□□□ 1.15
VCX3A-202ENST00000398729 ARAP3Q8WWN8 1544 aa22.21■■□□□ 1.15
VCX3A-202ENST00000398729 RAPGEF6Q8TEU7 1601 aa22.17■■□□□ 1.14
VCX3A-202ENST00000398729 RAPGEF3O95398 923 aa22.15■■□□□ 1.14
VCX3A-202ENST00000398729 EFCAB5A4FU69 1503 aa22.15■■□□□ 1.14
VCX3A-202ENST00000398729 FHOD3Q2V2M9 1422 aa22.14■■□□□ 1.14
VCX3A-202ENST00000398729 UBTFP17480 764 aaKnown RBP22.14■■□□□ 1.13
VCX3A-202ENST00000398729 EHMT2Q96KQ7 1210 aa22.13■■□□□ 1.13
VCX3A-202ENST00000398729 PHLDB1Q86UU1 1377 aa22.11■■□□□ 1.13
VCX3A-202ENST00000398729 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.08■■□□□ 1.13
VCX3A-202ENST00000398729 HNRNPUL2Q1KMD3 747 aaKnown RBP22.08■■□□□ 1.13
VCX3A-202ENST00000398729 FBXO41Q8TF61 875 aa22.08■■□□□ 1.13
VCX3A-202ENST00000398729 PTPRMP28827 1452 aa22.08■■□□□ 1.12
VCX3A-202ENST00000398729 NUP153P49790 1475 aaKnown RBP22.07■■□□□ 1.12
VCX3A-202ENST00000398729 ABCA9Q8IUA7 1624 aa22.06■■□□□ 1.12
VCX3A-202ENST00000398729 ADAMTSL3P82987 1691 aa22.05■■□□□ 1.12
VCX3A-202ENST00000398729 NEO1Q92859 1461 aa22.02■■□□□ 1.12
VCX3A-202ENST00000398729 ARID4BQ4LE39 1312 aaPredicted RBP21.98■■□□□ 1.11
VCX3A-202ENST00000398729 ARHGAP35Q9NRY4 1499 aa21.96■■□□□ 1.11
VCX3A-202ENST00000398729 FRMPD1Q5SYB0 1578 aa21.96■■□□□ 1.11
VCX3A-202ENST00000398729 PLEKHD1A6NEE1 506 aa21.96■■□□□ 1.11
VCX3A-202ENST00000398729 FMN1Q68DA7 1419 aa21.96■■□□□ 1.11
VCX3A-202ENST00000398729 BCORL1Q5H9F3 1711 aa21.94■■□□□ 1.1
VCX3A-202ENST00000398729 MADDQ8WXG6 1647 aa21.91■■□□□ 1.1
VCX3A-202ENST00000398729 LMTK3Q96Q04 1460 aa21.9■■□□□ 1.1
VCX3A-202ENST00000398729 ATP1B4Q9UN42 357 aaPredicted RBP21.89■■□□□ 1.09
VCX3A-202ENST00000398729 AKNAQ7Z591 1439 aa21.89■■□□□ 1.09
VCX3A-202ENST00000398729 HECW1Q76N89 1606 aa21.88■■□□□ 1.09
VCX3A-202ENST00000398729 CDK13Q14004 1512 aaKnown RBP21.88■■□□□ 1.09
VCX3A-202ENST00000398729 PCF11O94913 1555 aaKnown RBP21.87■■□□□ 1.09
VCX3A-202ENST00000398729 DENND4BO75064 1496 aaPredicted RBP21.87■■□□□ 1.09
VCX3A-202ENST00000398729 HSPA2P54652 639 aa21.86■■□□□ 1.09
VCX3A-202ENST00000398729 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.82■■□□□ 1.08
VCX3A-202ENST00000398729 RICTORQ6R327 1708 aa21.82■■□□□ 1.08
VCX3A-202ENST00000398729 FANCAO15360 1455 aa21.82■■□□□ 1.08
VCX3A-202ENST00000398729 PLPPR3Q6T4P5 718 aa21.81■■□□□ 1.08
VCX3A-202ENST00000398729 ARHGEF40Q8TER5 1519 aa21.8■■□□□ 1.08
VCX3A-202ENST00000398729 CDK11AQ9UQ88 783 aaPredicted RBP21.8■■□□□ 1.08
VCX3A-202ENST00000398729 YEATS2Q9ULM3 1422 aa21.8■■□□□ 1.08
VCX3A-202ENST00000398729 RIMS1Q86UR5 1692 aaKnown RBP21.79■■□□□ 1.08
VCX3A-202ENST00000398729 TTC37Q6PGP7 1564 aa21.78■■□□□ 1.08
VCX3A-202ENST00000398729 SIGLEC1Q9BZZ2 1709 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms