RNA–Protein interactions for RNA: ENST00000397617.7

PTPRD-206, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5 BASIC

Gene PTPRD, Length 8,248 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-206ENST00000397617 KIAA0586Q9BVV6 1533 aa8.94□□□□□ -0.98
PTPRD-206ENST00000397617 RRBP1Q9P2E9 1410 aaKnown RBP8.93□□□□□ -0.98
PTPRD-206ENST00000397617 CTTNBP2Q8WZ74 1663 aa8.93□□□□□ -0.98
PTPRD-206ENST00000397617 AKNAQ7Z591 1439 aa8.93□□□□□ -0.98
PTPRD-206ENST00000397617 UGGT2Q9NYU1 1516 aa8.92□□□□□ -0.98
PTPRD-206ENST00000397617 ARAP1Q96P48 1450 aa8.91□□□□□ -0.98
PTPRD-206ENST00000397617 TIMELESSQ9UNS1 1208 aa8.91□□□□□ -0.98
PTPRD-206ENST00000397617 CCDC18Q5T9S5 1454 aa8.91□□□□□ -0.98
PTPRD-206ENST00000397617 ADAMTS12P58397 1594 aa8.9□□□□□ -0.99
PTPRD-206ENST00000397617 TIAM1Q13009 1591 aa8.89□□□□□ -0.99
PTPRD-206ENST00000397617 NESP48681 1621 aa8.89□□□□□ -0.99
PTPRD-206ENST00000397617 PCGF6Q9BYE7 350 aa8.88□□□□□ -0.99
PTPRD-206ENST00000397617 CFAP43Q8NDM7 1665 aa8.88□□□□□ -0.99
PTPRD-206ENST00000397617 IQGAP2Q13576 1575 aa8.87□□□□□ -0.99
PTPRD-206ENST00000397617 NUP160Q12769 1436 aa8.86□□□□□ -0.99
PTPRD-206ENST00000397617 SYNJ2O15056 1496 aa8.86□□□□□ -0.99
PTPRD-206ENST00000397617 MIA2Q96PC5 1412 aa8.85□□□□□ -0.99
PTPRD-206ENST00000397617 LRRC9Q6ZRR7 1453 aa8.83□□□□□ -1
PTPRD-206ENST00000397617 CCNB3Q8WWL7 1395 aa8.83□□□□□ -1
PTPRD-206ENST00000397617 CARMIL2Q6F5E8 1435 aa8.83□□□□□ -1
PTPRD-206ENST00000397617 RAD54L2Q9Y4B4 1467 aa8.82□□□□□ -1
PTPRD-206ENST00000397617 GRIN2AQ12879 1464 aa8.82□□□□□ -1
PTPRD-206ENST00000397617 ERCC6Q03468 1493 aa8.82□□□□□ -1
PTPRD-206ENST00000397617 SNAPC4Q5SXM2 1469 aa8.82□□□□□ -1
PTPRD-206ENST00000397617 PBRM1Q86U86 1689 aa8.82□□□□□ -1
PTPRD-206ENST00000397617 EHBP1L1Q8N3D4 1523 aa8.81□□□□□ -1
PTPRD-206ENST00000397617 CDK11AQ9UQ88 783 aaPredicted RBP8.81□□□□□ -1
PTPRD-206ENST00000397617 HECW1Q76N89 1606 aa8.81□□□□□ -1
PTPRD-206ENST00000397617 TDRD9Q8NDG6 1382 aaKnown RBP8.79□□□□□ -1
PTPRD-206ENST00000397617 ARHGEF11O15085 1522 aa8.78□□□□□ -1
PTPRD-206ENST00000397617 EIF4G3O43432 1585 aaKnown RBP8.77□□□□□ -1.01
PTPRD-206ENST00000397617 MYOM3Q5VTT5 1437 aa8.75□□□□□ -1.01
PTPRD-206ENST00000397617 SUPT6HQ7KZ85 1726 aaKnown RBP8.74□□□□□ -1.01
PTPRD-206ENST00000397617 TCOF1Q13428 1488 aaKnown RBP8.73□□□□□ -1.01
PTPRD-206ENST00000397617 MTUS2Q5JR59 1369 aa8.73□□□□□ -1.01
PTPRD-206ENST00000397617 RSPH4AQ5TD94 716 aa8.73□□□□□ -1.01
PTPRD-206ENST00000397617 HFM1A2PYH4 1435 aa8.72□□□□□ -1.01
PTPRD-206ENST00000397617 PCF11O94913 1555 aaKnown RBP8.72□□□□□ -1.01
PTPRD-206ENST00000397617 KIAA0556O60303 1618 aa8.72□□□□□ -1.01
PTPRD-206ENST00000397617 ROCK1Q13464 1354 aa8.72□□□□□ -1.01
PTPRD-206ENST00000397617 FGD6Q6ZV73 1430 aa8.72□□□□□ -1.01
PTPRD-206ENST00000397617 EPRSP07814 1512 aaKnown RBP8.71□□□□□ -1.02
PTPRD-206ENST00000397617 ARAP3Q8WWN8 1544 aa8.7□□□□□ -1.02
PTPRD-206ENST00000397617 TROQ12816 1431 aaPredicted RBP8.7□□□□□ -1.02
PTPRD-206ENST00000397617 SHROOM2Q13796 1616 aa8.69□□□□□ -1.02
PTPRD-206ENST00000397617 DISP1Q96F81 1524 aa8.69□□□□□ -1.02
PTPRD-206ENST00000397617 ADCY10Q96PN6 1610 aa8.68□□□□□ -1.02
PTPRD-206ENST00000397617 FHOD3Q2V2M9 1422 aa8.67□□□□□ -1.02
PTPRD-206ENST00000397617 SHANK2Q9UPX8 1470 aa8.67□□□□□ -1.02
PTPRD-206ENST00000397617 UHRF1BP1LA0JNW5 1464 aa8.67□□□□□ -1.02
PTPRD-206ENST00000397617 PLEKHH2Q8IVE3 1493 aa8.66□□□□□ -1.02
PTPRD-206ENST00000397617 ITSN2Q9NZM3 1697 aa8.66□□□□□ -1.02
PTPRD-206ENST00000397617 ZNF608Q9ULD9 1512 aaPredicted RBP8.66□□□□□ -1.02
PTPRD-206ENST00000397617 MYT1Q01538 1121 aa8.66□□□□□ -1.02
PTPRD-206ENST00000397617 SETD5Q9C0A6 1442 aa8.66□□□□□ -1.02
PTPRD-206ENST00000397617 NCOA2Q15596 1464 aa8.65□□□□□ -1.02
PTPRD-206ENST00000397617 RAPGEF6Q8TEU7 1601 aa8.64□□□□□ -1.03
PTPRD-206ENST00000397617 UACAQ9BZF9 1416 aa8.64□□□□□ -1.03
PTPRD-206ENST00000397617 CHMP7Q8WUX9 453 aaPredicted RBP8.64□□□□□ -1.03
PTPRD-206ENST00000397617 ABCA8O94911 1581 aa8.64□□□□□ -1.03
PTPRD-206ENST00000397617 WDR7Q9Y4E6 1490 aa8.63□□□□□ -1.03
PTPRD-206ENST00000397617 CCER1Q8TC90 406 aaPredicted RBP8.63□□□□□ -1.03
PTPRD-206ENST00000397617 ADGRL2O95490 1459 aa8.62□□□□□ -1.03
PTPRD-206ENST00000397617 NUP153P49790 1475 aaKnown RBP8.62□□□□□ -1.03
PTPRD-206ENST00000397617 PHLDB1Q86UU1 1377 aa8.62□□□□□ -1.03
PTPRD-206ENST00000397617 JPH4Q96JJ6 628 aa8.61□□□□□ -1.03
PTPRD-206ENST00000397617 KIAA1107Q9UPP5 1409 aa8.6□□□□□ -1.03
PTPRD-206ENST00000397617 DHX57Q6P158 1386 aaKnown RBP8.6□□□□□ -1.03
PTPRD-206ENST00000397617 DNAJC5BQ9UF47 199 aa8.59□□□□□ -1.03
PTPRD-206ENST00000397617 KDM5BQ9UGL1 1544 aa8.59□□□□□ -1.03
PTPRD-206ENST00000397617 GCC2Q8IWJ2 1684 aa8.59□□□□□ -1.03
PTPRD-206ENST00000397617 STAC3Q96MF2 364 aa8.58□□□□□ -1.04
PTPRD-206ENST00000397617 ARHGEF5Q12774 1597 aa8.58□□□□□ -1.04
PTPRD-206ENST00000397617 KANK4Q5T7N3 995 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-206ENST00000397617 PTPRGP23470 1445 aa8.57□□□□□ -1.04
PTPRD-206ENST00000397617 CEP170Q5SW79 1584 aa8.57□□□□□ -1.04
PTPRD-206ENST00000397617 NAIPQ13075 1403 aa8.57□□□□□ -1.04
PTPRD-206ENST00000397617 ABCC2Q92887 1545 aa8.57□□□□□ -1.04
PTPRD-206ENST00000397617 DNMT1P26358 1616 aaKnown RBP8.56□□□□□ -1.04
PTPRD-206ENST00000397617 CLASP1Q7Z460 1538 aa8.56□□□□□ -1.04
PTPRD-206ENST00000397617 PTPN23Q9H3S7 1636 aa8.56□□□□□ -1.04
PTPRD-206ENST00000397617 PLEKHD1A6NEE1 506 aa8.54□□□□□ -1.04
PTPRD-206ENST00000397617 KIF14Q15058 1648 aa8.54□□□□□ -1.04
PTPRD-206ENST00000397617 TEX14Q8IWB6 1497 aa8.54□□□□□ -1.04
PTPRD-206ENST00000397617 RAB3GAP2Q9H2M9 1393 aa8.54□□□□□ -1.04
PTPRD-206ENST00000397617 ABCC10Q5T3U5 1492 aa8.53□□□□□ -1.04
PTPRD-206ENST00000397617 MAST1Q9Y2H9 1570 aa8.52□□□□□ -1.05
PTPRD-206ENST00000397617 GPATCH8Q9UKJ3 1502 aaKnown RBP8.52□□□□□ -1.05
PTPRD-206ENST00000397617 KDM5DQ9BY66 1539 aa8.51□□□□□ -1.05
PTPRD-206ENST00000397617 ANKRD30AQ9BXX3 1397 aa8.51□□□□□ -1.05
PTPRD-206ENST00000397617 NCOA1Q15788 1441 aa8.51□□□□□ -1.05
PTPRD-206ENST00000397617 PRG4Q92954 1404 aaPredicted RBP8.5□□□□□ -1.05
PTPRD-206ENST00000397617 ATP10AO60312 1499 aa8.5□□□□□ -1.05
PTPRD-206ENST00000397617 ATP10BO94823 1461 aa8.5□□□□□ -1.05
PTPRD-206ENST00000397617 ARHGEF12Q9NZN5 1544 aa8.5□□□□□ -1.05
PTPRD-206ENST00000397617 RTEL1-TNFRSF6BF6WH68 1400 aa8.5□□□□□ -1.05
PTPRD-206ENST00000397617 LRRIQ1Q96JM4 1722 aa8.49□□□□□ -1.05
PTPRD-206ENST00000397617 SLC24A1O60721 1099 aa8.49□□□□□ -1.05
PTPRD-206ENST00000397617 ZNF316A6NFI3 1004 aaPredicted RBP8.48□□□□□ -1.05
PTPRD-206ENST00000397617 ADGBQ8N7X0 1667 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms