RNA–Protein interactions for RNA: ENST00000397417.6

IFT140-202, Transcript of intraflagellar transport 140, humanhuman

TSL 5

Gene IFT140, Length 4,023 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-202ENST00000397417 CARMIL1Q5VZK9 1371 aa15.63■□□□□ 0.09
IFT140-202ENST00000397417 DNAJC5BQ9UF47 199 aa15.63■□□□□ 0.09
IFT140-202ENST00000397417 NPM1P06748 294 aaKnown RBP eCLIP15.62■□□□□ 0.09
IFT140-202ENST00000397417 EEA1Q15075 1411 aa15.62■□□□□ 0.09
IFT140-202ENST00000397417 TOP2AP11388 1531 aaKnown RBP15.6■□□□□ 0.09
IFT140-202ENST00000397417 TSPY4P0CV99 314 aa15.6■□□□□ 0.09
IFT140-202ENST00000397417 TSPY10P0CW01 314 aa15.6■□□□□ 0.09
IFT140-202ENST00000397417 CEP164Q9UPV0 1460 aa15.59■□□□□ 0.09
IFT140-202ENST00000397417 ATAD2BQ9ULI0 1458 aa15.58■□□□□ 0.09
IFT140-202ENST00000397417 SMARCA4P51532 1647 aa15.57■□□□□ 0.08
IFT140-202ENST00000397417 FAM9BQ8IZU0 186 aa15.57■□□□□ 0.08
IFT140-202ENST00000397417 PLEKHD1A6NEE1 506 aa15.56■□□□□ 0.08
IFT140-202ENST00000397417 FOXD1Q16676 465 aa15.55■□□□□ 0.08
IFT140-202ENST00000397417 PLEKHG5O94827 1062 aa15.54■□□□□ 0.08
IFT140-202ENST00000397417 CFDP1Q9UEE9 299 aaPredicted RBP15.54■□□□□ 0.08
IFT140-202ENST00000397417 EIF4G1Q04637 1599 aaKnown RBP15.54■□□□□ 0.08
IFT140-202ENST00000397417 STAG3Q9UJ98 1225 aa15.49■□□□□ 0.07
IFT140-202ENST00000397417 RAPGEF2Q9Y4G8 1499 aa15.48■□□□□ 0.07
IFT140-202ENST00000397417 SMARCA2P51531 1590 aa15.48■□□□□ 0.07
IFT140-202ENST00000397417 SLC24A1O60721 1099 aa15.48■□□□□ 0.07
IFT140-202ENST00000397417 HNRNPUQ00839 825 aaKnown RBP eCLIP15.47■□□□□ 0.07
IFT140-202ENST00000397417 CADPSQ9ULU8 1353 aa15.47■□□□□ 0.07
IFT140-202ENST00000397417 IRX6P78412 446 aaPredicted RBP15.46■□□□□ 0.07
IFT140-202ENST00000397417 PEG3Q9GZU2 1588 aa15.46■□□□□ 0.07
IFT140-202ENST00000397417 ESF1Q9H501 851 aaKnown RBP15.43■□□□□ 0.06
IFT140-202ENST00000397417 FHOD3Q2V2M9 1422 aa15.4■□□□□ 0.06
IFT140-202ENST00000397417 CLSPNQ9HAW4 1339 aa15.39■□□□□ 0.05
IFT140-202ENST00000397417 FKBP8Q14318 412 aa15.38■□□□□ 0.05
IFT140-202ENST00000397417 CCNB3Q8WWL7 1395 aa15.37■□□□□ 0.05
IFT140-202ENST00000397417 VPS8Q8N3P4 1428 aa15.35■□□□□ 0.05
IFT140-202ENST00000397417 MLECQ14165 292 aa15.35■□□□□ 0.05
IFT140-202ENST00000397417 RAD54L2Q9Y4B4 1467 aa15.34■□□□□ 0.05
IFT140-202ENST00000397417 MRS2Q9HD23 443 aa15.33■□□□□ 0.04
IFT140-202ENST00000397417 PDS5BQ9NTI5 1447 aa15.32■□□□□ 0.04
IFT140-202ENST00000397417 NESP48681 1621 aa15.31■□□□□ 0.04
IFT140-202ENST00000397417 EIF4G2P78344 907 aaKnown RBP eCLIP15.29■□□□□ 0.044e-7■■■□□ 18.2
IFT140-202ENST00000397417 FANCD2Q9BXW9 1451 aa15.29■□□□□ 0.04
IFT140-202ENST00000397417 TMC1Q8TDI8 760 aa15.28■□□□□ 0.04
IFT140-202ENST00000397417 ARID4BQ4LE39 1312 aaPredicted RBP15.27■□□□□ 0.04
IFT140-202ENST00000397417 JPH4Q96JJ6 628 aa15.26■□□□□ 0.03
IFT140-202ENST00000397417 HNRNPMP52272 730 aaKnown RBP eCLIP15.25■□□□□ 0.03
IFT140-202ENST00000397417 GGT6Q6P531 493 aa15.24■□□□□ 0.03
IFT140-202ENST00000397417 DCAF11Q8TEB1 546 aa15.23■□□□□ 0.03
IFT140-202ENST00000397417 SAFB2Q14151 953 aaKnown RBP eCLIP15.23■□□□□ 0.03
IFT140-202ENST00000397417 DAXXQ9UER7 740 aaPredicted RBP15.23■□□□□ 0.03
IFT140-202ENST00000397417 CANXP27824 592 aaKnown RBP15.22■□□□□ 0.03
IFT140-202ENST00000397417 TNNT2P45379 298 aaPredicted RBP15.22■□□□□ 0.03
IFT140-202ENST00000397417 CARD11Q9BXL7 1154 aa15.22■□□□□ 0.03
IFT140-202ENST00000397417 TRHP20396 242 aaPredicted RBP15.21■□□□□ 0.03
IFT140-202ENST00000397417 IGF1RP08069 1367 aa15.21■□□□□ 0.03
IFT140-202ENST00000397417 RAB3GAP2Q9H2M9 1393 aa15.21■□□□□ 0.03
IFT140-202ENST00000397417 FHAD1B1AJZ9 1412 aa15.21■□□□□ 0.03
IFT140-202ENST00000397417 AQRO60306 1485 aaKnown RBP eCLIP15.2■□□□□ 0.021e-6■■■■□ 25.5
IFT140-202ENST00000397417 PKD2Q13563 968 aa15.19■□□□□ 0.02
IFT140-202ENST00000397417 SYNJ1O43426 1573 aa15.19■□□□□ 0.02
IFT140-202ENST00000397417 FGD5Q6ZNL6 1462 aa15.19■□□□□ 0.02
IFT140-202ENST00000397417 NCAPD3P42695 1498 aa15.18■□□□□ 0.02
IFT140-202ENST00000397417 HMGXB3Q12766 1538 aa15.18■□□□□ 0.02
IFT140-202ENST00000397417 NUTM2DQ5VT03 806 aaPredicted RBP15.18■□□□□ 0.02
IFT140-202ENST00000397417 ZNF644Q9H582 1327 aaPredicted RBP15.17■□□□□ 0.02
IFT140-202ENST00000397417 NPM2Q86SE8 214 aaKnown RBP15.17■□□□□ 0.02
IFT140-202ENST00000397417 ZBTB7CA1YPR0 619 aa15.16■□□□□ 0.02
IFT140-202ENST00000397417 PPP1R15AO75807 674 aaPredicted RBP15.15■□□□□ 0.02
IFT140-202ENST00000397417 PPM1GO15355 546 aaPredicted RBP15.14■□□□□ 0.01
IFT140-202ENST00000397417 NEUROD2Q15784 382 aa15.14■□□□□ 0.01
IFT140-202ENST00000397417 CYB5RLQ6IPT4 315 aa15.14■□□□□ 0.01
IFT140-202ENST00000397417 KIF21BO75037 1637 aa15.13■□□□□ 0.01
IFT140-202ENST00000397417 CC2D1BQ5T0F9 858 aaKnown RBP15.12■□□□□ 0.01
IFT140-202ENST00000397417 C14orf37Q86TY3 774 aa15.11■□□□□ 0.01
IFT140-202ENST00000397417 MPHOSPH9Q99550 1183 aa15.11■□□□□ 0.01
IFT140-202ENST00000397417 ARHGAP35Q9NRY4 1499 aa15.1■□□□□ 0.01
IFT140-202ENST00000397417 SETD5Q9C0A6 1442 aa15.1■□□□□ 0.01
IFT140-202ENST00000397417 SOX12O15370 315 aa15.09■□□□□ 0.01
IFT140-202ENST00000397417 HSPA5P11021 654 aaKnown RBP15.07■□□□□ 0
IFT140-202ENST00000397417 STK26Q9P289 416 aa15.07■□□□□ 0
IFT140-202ENST00000397417 NEFMP07197 916 aa15.07■□□□□ 0
IFT140-202ENST00000397417 L3MBTL2Q969R5 705 aa15.07■□□□□ 0
IFT140-202ENST00000397417 SUPT16HQ9Y5B9 1047 aaKnown RBP15.06■□□□□ 0
IFT140-202ENST00000397417 NUP155O75694 1391 aa15.06■□□□□ 0
IFT140-202ENST00000397417 DHX57Q6P158 1386 aaKnown RBP15.05■□□□□ 0
IFT140-202ENST00000397417 KIF3BO15066 747 aa15.05■□□□□ 0
IFT140-202ENST00000397417 CC2D2AQ9P2K1 1620 aa15.04■□□□□ -0
IFT140-202ENST00000397417 WDR43Q15061 677 aaKnown RBP eCLIP15.04■□□□□ -0
IFT140-202ENST00000397417 FMN1Q68DA7 1419 aa15.04■□□□□ -0
IFT140-202ENST00000397417 GAPVD1Q14C86 1478 aa15.02■□□□□ -0
IFT140-202ENST00000397417 CARMIL2Q6F5E8 1435 aa15.02■□□□□ -0
IFT140-202ENST00000397417 A0A0G2JS52 829 aa15.01□□□□□ -0.01
IFT140-202ENST00000397417 LMOD2Q6P5Q4 547 aa14.99□□□□□ -0.01
IFT140-202ENST00000397417 CCDC136Q96JN2 1154 aa14.98□□□□□ -0.01
IFT140-202ENST00000397417 PHLDB1Q86UU1 1377 aa14.98□□□□□ -0.01
IFT140-202ENST00000397417 NUTM2FA1L443 756 aa14.97□□□□□ -0.01
IFT140-202ENST00000397417 EFCAB2Q5VUJ9 269 aa14.97□□□□□ -0.01
IFT140-202ENST00000397417 ARAP1Q96P48 1450 aa14.97□□□□□ -0.01
IFT140-202ENST00000397417 KNSTRNQ9Y448 316 aa14.96□□□□□ -0.01
IFT140-202ENST00000397417 POGKQ9P215 609 aa14.96□□□□□ -0.01
IFT140-202ENST00000397417 TOP2BQ02880 1626 aa14.95□□□□□ -0.02
IFT140-202ENST00000397417 CFTRP13569 1480 aa14.95□□□□□ -0.02
IFT140-202ENST00000397417 PRXQ9BXM0 1461 aa14.93□□□□□ -0.02
IFT140-202ENST00000397417 PTPRGP23470 1445 aa14.93□□□□□ -0.02
IFT140-202ENST00000397417 CUX1P39880 1505 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms