RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 GRIN2AQ12879 1464 aa20.27■□□□□ 0.83
TRIM39-204ENST00000396548 SAMD9Q5K651 1589 aa20.21■□□□□ 0.83
TRIM39-204ENST00000396548 VPS8Q8N3P4 1428 aa20.2■□□□□ 0.82
TRIM39-204ENST00000396548 EFCAB5A4FU69 1503 aa20.19■□□□□ 0.82
TRIM39-204ENST00000396548 CEP170Q5SW79 1584 aa20.19■□□□□ 0.82
TRIM39-204ENST00000396548 IQGAP2Q13576 1575 aa20.18■□□□□ 0.82
TRIM39-204ENST00000396548 NUP160Q12769 1436 aa20.16■□□□□ 0.82
TRIM39-204ENST00000396548 CHD1O14646 1710 aa20.15■□□□□ 0.82
TRIM39-204ENST00000396548 KIAA0586Q9BVV6 1533 aa20.14■□□□□ 0.82
TRIM39-204ENST00000396548 RANGAP1P46060 587 aaPredicted RBP20.12■□□□□ 0.81
TRIM39-204ENST00000396548 UGGT2Q9NYU1 1516 aa20.12■□□□□ 0.81
TRIM39-204ENST00000396548 CHMP7Q8WUX9 453 aaPredicted RBP20.09■□□□□ 0.81
TRIM39-204ENST00000396548 FHOD3Q2V2M9 1422 aa20.03■□□□□ 0.8
TRIM39-204ENST00000396548 DISP1Q96F81 1524 aa20.03■□□□□ 0.8
TRIM39-204ENST00000396548 KIAA0556O60303 1618 aa20.01■□□□□ 0.79
TRIM39-204ENST00000396548 PCF11O94913 1555 aaKnown RBP19.99■□□□□ 0.79
TRIM39-204ENST00000396548 FBLN2P98095 1184 aa19.98■□□□□ 0.79
TRIM39-204ENST00000396548 SHROOM2Q13796 1616 aa19.97■□□□□ 0.79
TRIM39-204ENST00000396548 P3H3Q8IVL6 736 aa19.95■□□□□ 0.78
TRIM39-204ENST00000396548 MAP3K1Q13233 1512 aa19.95■□□□□ 0.78
TRIM39-204ENST00000396548 CLASP1Q7Z460 1538 aa19.94■□□□□ 0.78
TRIM39-204ENST00000396548 FMN1Q68DA7 1419 aa19.94■□□□□ 0.78
TRIM39-204ENST00000396548 CASKIN1Q8WXD9 1431 aa19.94■□□□□ 0.78
TRIM39-204ENST00000396548 FYCO1Q9BQS8 1478 aa19.94■□□□□ 0.78
TRIM39-204ENST00000396548 LRRIQ1Q96JM4 1722 aa19.93■□□□□ 0.78
TRIM39-204ENST00000396548 CFAP43Q8NDM7 1665 aa19.92■□□□□ 0.78
TRIM39-204ENST00000396548 TIAM1Q13009 1591 aa19.9■□□□□ 0.78
TRIM39-204ENST00000396548 JPH4Q96JJ6 628 aa19.88■□□□□ 0.77
TRIM39-204ENST00000396548 PPARGC1BQ86YN6 1023 aaKnown RBP19.87■□□□□ 0.77
TRIM39-204ENST00000396548 TRIM26Q12899 539 aaPredicted RBP19.85■□□□□ 0.77
TRIM39-204ENST00000396548 CARMIL2Q6F5E8 1435 aa19.81■□□□□ 0.76
TRIM39-204ENST00000396548 HECW1Q76N89 1606 aa19.8■□□□□ 0.76
TRIM39-204ENST00000396548 KANK4Q5T7N3 995 aaPredicted RBP19.8■□□□□ 0.76
TRIM39-204ENST00000396548 PRG4Q92954 1404 aaPredicted RBP19.79■□□□□ 0.76
TRIM39-204ENST00000396548 RAPGEF6Q8TEU7 1601 aa19.78■□□□□ 0.76
TRIM39-204ENST00000396548 LRRC9Q6ZRR7 1453 aa19.78■□□□□ 0.76
TRIM39-204ENST00000396548 ERCC6L2Q5T890 1561 aa19.77■□□□□ 0.76
TRIM39-204ENST00000396548 APLP2Q06481 763 aa19.77■□□□□ 0.75
TRIM39-204ENST00000396548 PCGF6Q9BYE7 350 aa19.75■□□□□ 0.75
TRIM39-204ENST00000396548 ABCA8O94911 1581 aa19.75■□□□□ 0.75
TRIM39-204ENST00000396548 CCDC18Q5T9S5 1454 aa19.73■□□□□ 0.75
TRIM39-204ENST00000396548 NUP153P49790 1475 aaKnown RBP19.73■□□□□ 0.75
TRIM39-204ENST00000396548 EPRSP07814 1512 aaKnown RBP19.72■□□□□ 0.75
TRIM39-204ENST00000396548 PLB1Q6P1J6 1458 aa19.7■□□□□ 0.74
TRIM39-204ENST00000396548 MAGI3Q5TCQ9 1506 aa19.69■□□□□ 0.74
TRIM39-204ENST00000396548 TTBK1Q5TCY1 1321 aaPredicted RBP19.67■□□□□ 0.74
TRIM39-204ENST00000396548 CDK13Q14004 1512 aaKnown RBP19.67■□□□□ 0.74
TRIM39-204ENST00000396548 EHBP1L1Q8N3D4 1523 aa19.64■□□□□ 0.73
TRIM39-204ENST00000396548 PTPRGP23470 1445 aa19.63■□□□□ 0.73
TRIM39-204ENST00000396548 ARHGEF11O15085 1522 aa19.63■□□□□ 0.73
TRIM39-204ENST00000396548 ATP1B4Q9UN42 357 aaPredicted RBP19.63■□□□□ 0.73
TRIM39-204ENST00000396548 OSCARQ8IYS5 282 aa19.62■□□□□ 0.73
TRIM39-204ENST00000396548 RRBP1Q9P2E9 1410 aaKnown RBP19.61■□□□□ 0.73
TRIM39-204ENST00000396548 SUPT6HQ7KZ85 1726 aaKnown RBP19.59■□□□□ 0.73
TRIM39-204ENST00000396548 PHLDB1Q86UU1 1377 aa19.58■□□□□ 0.72
TRIM39-204ENST00000396548 UACAQ9BZF9 1416 aa19.56■□□□□ 0.72
TRIM39-204ENST00000396548 ATP10BO94823 1461 aa19.56■□□□□ 0.72
TRIM39-204ENST00000396548 ABCC2Q92887 1545 aa19.55■□□□□ 0.72
TRIM39-204ENST00000396548 UHRF1BP1LA0JNW5 1464 aa19.55■□□□□ 0.72
TRIM39-204ENST00000396548 MTUS2Q5JR59 1369 aa19.54■□□□□ 0.72
TRIM39-204ENST00000396548 ADCY10Q96PN6 1610 aa19.54■□□□□ 0.72
TRIM39-204ENST00000396548 NCOA2Q15596 1464 aa19.54■□□□□ 0.72
TRIM39-204ENST00000396548 CCNB3Q8WWL7 1395 aa19.48■□□□□ 0.71
TRIM39-204ENST00000396548 TROQ12816 1431 aaPredicted RBP19.47■□□□□ 0.71
TRIM39-204ENST00000396548 ARID3CA6NKF2 412 aa19.46■□□□□ 0.71
TRIM39-204ENST00000396548 KDM5BQ9UGL1 1544 aa19.46■□□□□ 0.71
TRIM39-204ENST00000396548 ZCCHC11Q5TAX3 1644 aaKnown RBP19.45■□□□□ 0.7
TRIM39-204ENST00000396548 KIF14Q15058 1648 aa19.45■□□□□ 0.7
TRIM39-204ENST00000396548 MYOM3Q5VTT5 1437 aa19.45■□□□□ 0.7
TRIM39-204ENST00000396548 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.44■□□□□ 0.7
TRIM39-204ENST00000396548 FGD6Q6ZV73 1430 aa19.43■□□□□ 0.7
TRIM39-204ENST00000396548 CDK11AQ9UQ88 783 aaPredicted RBP19.41■□□□□ 0.7
TRIM39-204ENST00000396548 TCOF1Q13428 1488 aaKnown RBP19.4■□□□□ 0.7
TRIM39-204ENST00000396548 ABCC10Q5T3U5 1492 aa19.39■□□□□ 0.69
TRIM39-204ENST00000396548 PTPN23Q9H3S7 1636 aa19.39■□□□□ 0.69
TRIM39-204ENST00000396548 MIA2Q96PC5 1412 aa19.36■□□□□ 0.69
TRIM39-204ENST00000396548 CDC42BPAQ5VT25 1732 aa19.35■□□□□ 0.69
TRIM39-204ENST00000396548 ITSN2Q9NZM3 1697 aa19.35■□□□□ 0.69
TRIM39-204ENST00000396548 RIMBP3CA6NJZ7 1639 aa19.34■□□□□ 0.69
TRIM39-204ENST00000396548 RIMBP3BA6NNM3 1639 aa19.34■□□□□ 0.69
TRIM39-204ENST00000396548 RIMBP3Q9UFD9 1639 aa19.34■□□□□ 0.69
TRIM39-204ENST00000396548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.34■□□□□ 0.69
TRIM39-204ENST00000396548 HNRNPUL2Q1KMD3 747 aaKnown RBP19.34■□□□□ 0.69
TRIM39-204ENST00000396548 PLEKHD1A6NEE1 506 aa19.33■□□□□ 0.69
TRIM39-204ENST00000396548 GPATCH8Q9UKJ3 1502 aaKnown RBP19.33■□□□□ 0.68
TRIM39-204ENST00000396548 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.29■□□□□ 0.68
TRIM39-204ENST00000396548 TTC37Q6PGP7 1564 aa19.28■□□□□ 0.68
TRIM39-204ENST00000396548 CDC42BPBQ9Y5S2 1711 aa19.27■□□□□ 0.68
TRIM39-204ENST00000396548 PREX2Q70Z35 1606 aa19.27■□□□□ 0.68
TRIM39-204ENST00000396548 PTPRKQ15262 1439 aa19.26■□□□□ 0.67
TRIM39-204ENST00000396548 FAM50AQ14320 339 aaKnown RBP19.24■□□□□ 0.67
TRIM39-204ENST00000396548 WDR7Q9Y4E6 1490 aa19.23■□□□□ 0.67
TRIM39-204ENST00000396548 DNMT1P26358 1616 aaKnown RBP19.22■□□□□ 0.67
TRIM39-204ENST00000396548 MYO5CQ9NQX4 1742 aa19.22■□□□□ 0.67
TRIM39-204ENST00000396548 CAMSAP2Q08AD1 1489 aa19.21■□□□□ 0.67
TRIM39-204ENST00000396548 CROCC2H7BZ55 1655 aa19.19■□□□□ 0.66
TRIM39-204ENST00000396548 ASXL2Q76L83 1435 aa19.18■□□□□ 0.66
TRIM39-204ENST00000396548 ABCA9Q8IUA7 1624 aa19.18■□□□□ 0.66
TRIM39-204ENST00000396548 ZNF644Q9H582 1327 aaPredicted RBP19.17■□□□□ 0.66
TRIM39-204ENST00000396548 SAMD9LQ8IVG5 1584 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms