RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 ERCC6L2Q5T890 1561 aa40.05■■■■■ 4
SHMT1-204ENST00000395682 PRG4Q92954 1404 aaPredicted RBP39.99■■■■□ 3.99
SHMT1-204ENST00000395682 KIAA0586Q9BVV6 1533 aa39.99■■■■□ 3.99
SHMT1-204ENST00000395682 RAPGEF2Q9Y4G8 1499 aa39.91■■■■□ 3.98
SHMT1-204ENST00000395682 CHIC1Q5VXU3 224 aa39.75■■■■□ 3.95
SHMT1-204ENST00000395682 CSRNP3Q8WYN3 585 aa39.71■■■■□ 3.95
SHMT1-204ENST00000395682 PRXQ9BXM0 1461 aa39.7■■■■□ 3.95
SHMT1-204ENST00000395682 TRHP20396 242 aaPredicted RBP39.69■■■■□ 3.94
SHMT1-204ENST00000395682 IQGAP2Q13576 1575 aa39.68■■■■□ 3.94
SHMT1-204ENST00000395682 EEA1Q15075 1411 aa39.59■■■■□ 3.93
SHMT1-204ENST00000395682 CARMIL2Q6F5E8 1435 aa39.59■■■■□ 3.93
SHMT1-204ENST00000395682 FAM9AQ8IZU1 332 aaPredicted RBP39.58■■■■□ 3.93
SHMT1-204ENST00000395682 TTBK1Q5TCY1 1321 aaPredicted RBP39.51■■■■□ 3.92
SHMT1-204ENST00000395682 PTPRGP23470 1445 aa39.5■■■■□ 3.91
SHMT1-204ENST00000395682 TNIKQ9UKE5 1360 aa39.48■■■■□ 3.91
SHMT1-204ENST00000395682 UGGT2Q9NYU1 1516 aa39.48■■■■□ 3.91
SHMT1-204ENST00000395682 DISP1Q96F81 1524 aa39.45■■■■□ 3.91
SHMT1-204ENST00000395682 CTTNBP2Q8WZ74 1663 aa39.43■■■■□ 3.9
SHMT1-204ENST00000395682 NPM1P06748 294 aaKnown RBP eCLIP39.41■■■■□ 3.9
SHMT1-204ENST00000395682 ADCY10Q96PN6 1610 aa39.33■■■■□ 3.89
SHMT1-204ENST00000395682 KIAA0556O60303 1618 aa39.29■■■■□ 3.88
SHMT1-204ENST00000395682 GOLGA3Q08378 1498 aa39.26■■■■□ 3.88
SHMT1-204ENST00000395682 UACAQ9BZF9 1416 aa39.21■■■■□ 3.87
SHMT1-204ENST00000395682 KIF21BO75037 1637 aa39.16■■■■□ 3.86
SHMT1-204ENST00000395682 UHRF1BP1LA0JNW5 1464 aa39.14■■■■□ 3.86
SHMT1-204ENST00000395682 P3H3Q8IVL6 736 aa39.12■■■■□ 3.85
SHMT1-204ENST00000395682 MAPKBP1O60336 1514 aa39.12■■■■□ 3.85
SHMT1-204ENST00000395682 ABCC2Q92887 1545 aa39.11■■■■□ 3.85
SHMT1-204ENST00000395682 EHMT2Q96KQ7 1210 aa39.11■■■■□ 3.85
SHMT1-204ENST00000395682 RANGAP1P46060 587 aaPredicted RBP39.08■■■■□ 3.85
SHMT1-204ENST00000395682 FAM69CQ0P6D2 419 aa39.05■■■■□ 3.84
SHMT1-204ENST00000395682 UBTFP17480 764 aaKnown RBP39.03■■■■□ 3.84
SHMT1-204ENST00000395682 ABCC10Q5T3U5 1492 aa39.03■■■■□ 3.84
SHMT1-204ENST00000395682 PLB1Q6P1J6 1458 aa39■■■■□ 3.83
SHMT1-204ENST00000395682 KIF13AQ9H1H9 1805 aa38.98■■■■□ 3.83
SHMT1-204ENST00000395682 KDM5BQ9UGL1 1544 aa38.95■■■■□ 3.83
SHMT1-204ENST00000395682 SAMD9Q5K651 1589 aa38.95■■■■□ 3.83
SHMT1-204ENST00000395682 ASXL2Q76L83 1435 aa38.93■■■■□ 3.82
SHMT1-204ENST00000395682 ABCA8O94911 1581 aa38.9■■■■□ 3.82
SHMT1-204ENST00000395682 DIP2BQ9P265 1576 aa38.9■■■■□ 3.82
SHMT1-204ENST00000395682 ZCCHC11Q5TAX3 1644 aaKnown RBP38.84■■■■□ 3.81
SHMT1-204ENST00000395682 FHOD3Q2V2M9 1422 aa38.8■■■■□ 3.8
SHMT1-204ENST00000395682 EFCAB5A4FU69 1503 aa38.74■■■■□ 3.79
SHMT1-204ENST00000395682 ARID3CA6NKF2 412 aa38.73■■■■□ 3.79
SHMT1-204ENST00000395682 EPRSP07814 1512 aaKnown RBP38.68■■■■□ 3.78
SHMT1-204ENST00000395682 GLI2P10070 1586 aa38.66■■■■□ 3.78
SHMT1-204ENST00000395682 WDR7Q9Y4E6 1490 aa38.66■■■■□ 3.78
SHMT1-204ENST00000395682 ATP10BO94823 1461 aa38.65■■■■□ 3.78
SHMT1-204ENST00000395682 RAPGEF6Q8TEU7 1601 aa38.64■■■■□ 3.78
SHMT1-204ENST00000395682 KCNH8Q96L42 1107 aa38.62■■■■□ 3.77
SHMT1-204ENST00000395682 TSPOAP1O95153 1857 aa38.62■■■■□ 3.77
SHMT1-204ENST00000395682 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.57■■■■□ 3.76
SHMT1-204ENST00000395682 HNRNPUL2Q1KMD3 747 aaKnown RBP38.57■■■■□ 3.76
SHMT1-204ENST00000395682 ARHGAP35Q9NRY4 1499 aa38.57■■■■□ 3.76
SHMT1-204ENST00000395682 NUP153P49790 1475 aaKnown RBP38.54■■■■□ 3.76
SHMT1-204ENST00000395682 FMN1Q68DA7 1419 aa38.45■■■■□ 3.75
SHMT1-204ENST00000395682 MAP3K4Q9Y6R4 1608 aa38.45■■■■□ 3.75
SHMT1-204ENST00000395682 ATP1B4Q9UN42 357 aaPredicted RBP38.41■■■■□ 3.74
SHMT1-204ENST00000395682 PPRC1Q5VV67 1664 aaKnown RBP38.41■■■■□ 3.74
SHMT1-204ENST00000395682 CD109Q6YHK3 1445 aa38.38■■■■□ 3.74
SHMT1-204ENST00000395682 PLEKHD1A6NEE1 506 aa38.37■■■■□ 3.73
SHMT1-204ENST00000395682 KDM6BO15054 1643 aa38.35■■■■□ 3.73
SHMT1-204ENST00000395682 TEX14Q8IWB6 1497 aa38.34■■■■□ 3.73
SHMT1-204ENST00000395682 CFAP43Q8NDM7 1665 aa38.3■■■■□ 3.72
SHMT1-204ENST00000395682 CLIP1P30622 1438 aa38.29■■■■□ 3.72
SHMT1-204ENST00000395682 MAGI3Q5TCQ9 1506 aa38.26■■■■□ 3.72
SHMT1-204ENST00000395682 CDK13Q14004 1512 aaKnown RBP38.24■■■■□ 3.71
SHMT1-204ENST00000395682 HECW1Q76N89 1606 aa38.23■■■■□ 3.71
SHMT1-204ENST00000395682 COL17A1Q9UMD9 1497 aaPredicted RBP38.19■■■■□ 3.7
SHMT1-204ENST00000395682 ABCA9Q8IUA7 1624 aa38.19■■■■□ 3.7
SHMT1-204ENST00000395682 LOC105371045A0A1W2PR82 267 aa38.18■■■■□ 3.7
SHMT1-204ENST00000395682 CDK11AQ9UQ88 783 aaPredicted RBP38.15■■■■□ 3.7
SHMT1-204ENST00000395682 CASKIN1Q8WXD9 1431 aa38.13■■■■□ 3.7
SHMT1-204ENST00000395682 CEP162Q5TB80 1403 aa38.05■■■■□ 3.68
SHMT1-204ENST00000395682 PCF11O94913 1555 aaKnown RBP38.05■■■■□ 3.68
SHMT1-204ENST00000395682 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.02■■■■□ 3.68
SHMT1-204ENST00000395682 PHLDB1Q86UU1 1377 aa38■■■■□ 3.67
SHMT1-204ENST00000395682 LRRIQ1Q96JM4 1722 aa37.99■■■■□ 3.67
SHMT1-204ENST00000395682 FYCO1Q9BQS8 1478 aa37.98■■■■□ 3.67
SHMT1-204ENST00000395682 CCDC18Q5T9S5 1454 aa37.96■■■■□ 3.67
SHMT1-204ENST00000395682 ARAP3Q8WWN8 1544 aa37.95■■■■□ 3.67
SHMT1-204ENST00000395682 NEO1Q92859 1461 aa37.95■■■■□ 3.67
SHMT1-204ENST00000395682 TROQ12816 1431 aaPredicted RBP37.95■■■■□ 3.67
SHMT1-204ENST00000395682 TTC37Q6PGP7 1564 aa37.93■■■■□ 3.66
SHMT1-204ENST00000395682 AEBP2Q6ZN18 517 aaPredicted RBP37.85■■■■□ 3.65
SHMT1-204ENST00000395682 PLCH2O75038 1416 aa37.85■■■■□ 3.65
SHMT1-204ENST00000395682 FANCAO15360 1455 aa37.84■■■■□ 3.65
SHMT1-204ENST00000395682 RAPGEF3O95398 923 aa37.84■■■■□ 3.65
SHMT1-204ENST00000395682 KIF14Q15058 1648 aa37.83■■■■□ 3.65
SHMT1-204ENST00000395682 AKNAQ7Z591 1439 aa37.82■■■■□ 3.64
SHMT1-204ENST00000395682 EFCAB2Q5VUJ9 269 aa37.75■■■■□ 3.63
SHMT1-204ENST00000395682 CFAP74Q9C0B2 1584 aa37.74■■■■□ 3.63
SHMT1-204ENST00000395682 KDM4FA0A1W2PPD8 638 aa37.71■■■■□ 3.63
SHMT1-204ENST00000395682 DENND4BO75064 1496 aaPredicted RBP37.71■■■■□ 3.63
SHMT1-204ENST00000395682 MYO5CQ9NQX4 1742 aa37.7■■■■□ 3.63
SHMT1-204ENST00000395682 ADGRL1O94910 1474 aa37.64■■■■□ 3.62
SHMT1-204ENST00000395682 SCAPERQ9BY12 1400 aa37.63■■■■□ 3.61
SHMT1-204ENST00000395682 FRMPD1Q5SYB0 1578 aa37.63■■■■□ 3.61
SHMT1-204ENST00000395682 ARHGAP5Q13017 1502 aa37.62■■■■□ 3.61
SHMT1-204ENST00000395682 MTUS2Q5JR59 1369 aa37.62■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms