RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 KIAA0586Q9BVV6 1533 aa36.43■■■■□ 3.42
CLN3-207ENST00000395653 ARAP1Q96P48 1450 aa36.43■■■■□ 3.42
CLN3-207ENST00000395653 PRXQ9BXM0 1461 aa36.39■■■■□ 3.42
CLN3-207ENST00000395653 JPH4Q96JJ6 628 aa36.35■■■■□ 3.41
CLN3-207ENST00000395653 CSRNP3Q8WYN3 585 aa36.34■■■■□ 3.41
CLN3-207ENST00000395653 CYB5RLQ6IPT4 315 aa36.33■■■■□ 3.41
CLN3-207ENST00000395653 ERCC6L2Q5T890 1561 aa36.32■■■■□ 3.4
CLN3-207ENST00000395653 PRG4Q92954 1404 aaPredicted RBP36.29■■■■□ 3.4
CLN3-207ENST00000395653 IQGAP2Q13576 1575 aa36.24■■■■□ 3.39
CLN3-207ENST00000395653 FAM9AQ8IZU1 332 aaPredicted RBP36.17■■■■□ 3.38
CLN3-207ENST00000395653 CTTNBP2Q8WZ74 1663 aa36.13■■■■□ 3.37
CLN3-207ENST00000395653 UGGT2Q9NYU1 1516 aa36.06■■■■□ 3.36
CLN3-207ENST00000395653 KIF21BO75037 1637 aa36.04■■■■□ 3.36
CLN3-207ENST00000395653 CARMIL2Q6F5E8 1435 aa36.03■■■■□ 3.36
CLN3-207ENST00000395653 DISP1Q96F81 1524 aa35.97■■■■□ 3.35
CLN3-207ENST00000395653 TNIKQ9UKE5 1360 aa35.91■■■■□ 3.34
CLN3-207ENST00000395653 KIAA0556O60303 1618 aa35.89■■■■□ 3.34
CLN3-207ENST00000395653 PTPRGP23470 1445 aa35.86■■■■□ 3.33
CLN3-207ENST00000395653 GOLGA3Q08378 1498 aa35.86■■■■□ 3.33
CLN3-207ENST00000395653 ADCY10Q96PN6 1610 aa35.73■■■■□ 3.31
CLN3-207ENST00000395653 TTBK1Q5TCY1 1321 aaPredicted RBP35.72■■■■□ 3.31
CLN3-207ENST00000395653 SAMD9Q5K651 1589 aa35.69■■■■□ 3.3
CLN3-207ENST00000395653 UBTFP17480 764 aaKnown RBP35.66■■■■□ 3.3
CLN3-207ENST00000395653 EHMT2Q96KQ7 1210 aa35.65■■■■□ 3.3
CLN3-207ENST00000395653 UACAQ9BZF9 1416 aa35.64■■■■□ 3.3
CLN3-207ENST00000395653 UHRF1BP1LA0JNW5 1464 aa35.63■■■■□ 3.29
CLN3-207ENST00000395653 NPM1P06748 294 aaKnown RBP eCLIP35.6■■■■□ 3.29
CLN3-207ENST00000395653 ABCC2Q92887 1545 aa35.59■■■■□ 3.29
CLN3-207ENST00000395653 TRHP20396 242 aaPredicted RBP35.56■■■■□ 3.28
CLN3-207ENST00000395653 EFCAB5A4FU69 1503 aa35.56■■■■□ 3.28
CLN3-207ENST00000395653 P3H3Q8IVL6 736 aa35.54■■■■□ 3.28
CLN3-207ENST00000395653 MAPKBP1O60336 1514 aa35.53■■■■□ 3.28
CLN3-207ENST00000395653 RANGAP1P46060 587 aaPredicted RBP35.53■■■■□ 3.28
CLN3-207ENST00000395653 PLB1Q6P1J6 1458 aa35.51■■■■□ 3.27
CLN3-207ENST00000395653 ABCA8O94911 1581 aa35.5■■■■□ 3.27
CLN3-207ENST00000395653 KDM5BQ9UGL1 1544 aa35.46■■■■□ 3.27
CLN3-207ENST00000395653 FHOD3Q2V2M9 1422 aa35.44■■■■□ 3.26
CLN3-207ENST00000395653 ZCCHC11Q5TAX3 1644 aaKnown RBP35.36■■■■□ 3.25
CLN3-207ENST00000395653 ARHGAP35Q9NRY4 1499 aa35.36■■■■□ 3.25
CLN3-207ENST00000395653 ABCC10Q5T3U5 1492 aa35.35■■■■□ 3.25
CLN3-207ENST00000395653 ASXL2Q76L83 1435 aa35.31■■■■□ 3.24
CLN3-207ENST00000395653 RAPGEF6Q8TEU7 1601 aa35.31■■■■□ 3.24
CLN3-207ENST00000395653 KIF13AQ9H1H9 1805 aa35.3■■■■□ 3.24
CLN3-207ENST00000395653 DIP2BQ9P265 1576 aa35.29■■■■□ 3.24
CLN3-207ENST00000395653 FAM69CQ0P6D2 419 aa35.22■■■■□ 3.23
CLN3-207ENST00000395653 FMN1Q68DA7 1419 aa35.22■■■■□ 3.23
CLN3-207ENST00000395653 ATP10BO94823 1461 aa35.19■■■■□ 3.22
CLN3-207ENST00000395653 NUP153P49790 1475 aaKnown RBP35.19■■■■□ 3.22
CLN3-207ENST00000395653 CLIP1P30622 1438 aa35.17■■■■□ 3.22
CLN3-207ENST00000395653 WDR7Q9Y4E6 1490 aa35.16■■■■□ 3.22
CLN3-207ENST00000395653 GLI2P10070 1586 aa35.12■■■■□ 3.21
CLN3-207ENST00000395653 EPRSP07814 1512 aaKnown RBP35.11■■■■□ 3.21
CLN3-207ENST00000395653 ARID3CA6NKF2 412 aa35.11■■■■□ 3.21
CLN3-207ENST00000395653 LOC105371045A0A1W2PR82 267 aa35.06■■■■□ 3.2
CLN3-207ENST00000395653 HECW1Q76N89 1606 aa35.04■■■■□ 3.2
CLN3-207ENST00000395653 CEP162Q5TB80 1403 aa35.02■■■■□ 3.2
CLN3-207ENST00000395653 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35■■■■□ 3.19
CLN3-207ENST00000395653 HNRNPUL2Q1KMD3 747 aaKnown RBP35■■■■□ 3.19
CLN3-207ENST00000395653 MAP3K4Q9Y6R4 1608 aa34.95■■■■□ 3.19
CLN3-207ENST00000395653 CASKIN1Q8WXD9 1431 aa34.94■■■■□ 3.18
CLN3-207ENST00000395653 KCNH8Q96L42 1107 aa34.93■■■■□ 3.18
CLN3-207ENST00000395653 CDK13Q14004 1512 aaKnown RBP34.93■■■■□ 3.18
CLN3-207ENST00000395653 PCF11O94913 1555 aaKnown RBP34.93■■■■□ 3.18
CLN3-207ENST00000395653 ATP1B4Q9UN42 357 aaPredicted RBP34.91■■■■□ 3.18
CLN3-207ENST00000395653 TSPOAP1O95153 1857 aa34.91■■■■□ 3.18
CLN3-207ENST00000395653 PLEKHD1A6NEE1 506 aa34.88■■■■□ 3.17
CLN3-207ENST00000395653 FYCO1Q9BQS8 1478 aa34.87■■■■□ 3.17
CLN3-207ENST00000395653 CFAP43Q8NDM7 1665 aa34.87■■■■□ 3.17
CLN3-207ENST00000395653 PPRC1Q5VV67 1664 aaKnown RBP34.86■■■■□ 3.17
CLN3-207ENST00000395653 LRRIQ1Q96JM4 1722 aa34.83■■■■□ 3.17
CLN3-207ENST00000395653 CCDC18Q5T9S5 1454 aa34.81■■■■□ 3.16
CLN3-207ENST00000395653 CD109Q6YHK3 1445 aa34.81■■■■□ 3.16
CLN3-207ENST00000395653 ABCA9Q8IUA7 1624 aa34.81■■■■□ 3.16
CLN3-207ENST00000395653 TEX14Q8IWB6 1497 aa34.79■■■■□ 3.16
CLN3-207ENST00000395653 MAGI3Q5TCQ9 1506 aa34.77■■■■□ 3.16
CLN3-207ENST00000395653 CDK11AQ9UQ88 783 aaPredicted RBP34.77■■■■□ 3.16
CLN3-207ENST00000395653 KDM6BO15054 1643 aa34.69■■■■□ 3.14
CLN3-207ENST00000395653 TROQ12816 1431 aaPredicted RBP34.68■■■■□ 3.14
CLN3-207ENST00000395653 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.67■■■■□ 3.14
CLN3-207ENST00000395653 VPS8Q8N3P4 1428 aa34.62■■■■□ 3.13
CLN3-207ENST00000395653 TTC37Q6PGP7 1564 aa34.61■■■■□ 3.13
CLN3-207ENST00000395653 KIF14Q15058 1648 aa34.6■■■■□ 3.13
CLN3-207ENST00000395653 COL17A1Q9UMD9 1497 aaPredicted RBP34.53■■■■□ 3.12
CLN3-207ENST00000395653 PHLDB1Q86UU1 1377 aa34.53■■■■□ 3.12
CLN3-207ENST00000395653 NEO1Q92859 1461 aa34.53■■■■□ 3.12
CLN3-207ENST00000395653 PLCH2O75038 1416 aa34.46■■■■□ 3.11
CLN3-207ENST00000395653 ARAP3Q8WWN8 1544 aa34.46■■■■□ 3.11
CLN3-207ENST00000395653 CFAP74Q9C0B2 1584 aa34.45■■■■□ 3.11
CLN3-207ENST00000395653 MYO5CQ9NQX4 1742 aa34.44■■■■□ 3.1
CLN3-207ENST00000395653 FANCAO15360 1455 aa34.44■■■■□ 3.1
CLN3-207ENST00000395653 MTUS2Q5JR59 1369 aa34.42■■■■□ 3.1
CLN3-207ENST00000395653 TIAM1Q13009 1591 aa34.4■■■■□ 3.1
CLN3-207ENST00000395653 EHBP1L1Q8N3D4 1523 aa34.39■■■■□ 3.1
CLN3-207ENST00000395653 AKNAQ7Z591 1439 aa34.37■■■■□ 3.09
CLN3-207ENST00000395653 MAP3K1Q13233 1512 aa34.34■■■■□ 3.09
CLN3-207ENST00000395653 EFCAB2Q5VUJ9 269 aa34.32■■■■□ 3.08
CLN3-207ENST00000395653 PREX2Q70Z35 1606 aa34.32■■■■□ 3.08
CLN3-207ENST00000395653 ARHGAP5Q13017 1502 aa34.31■■■■□ 3.08
CLN3-207ENST00000395653 CDC42BPBQ9Y5S2 1711 aa34.28■■■■□ 3.08
CLN3-207ENST00000395653 CDC42BPAQ5VT25 1732 aa34.27■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms