RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TTBK1Q5TCY1 1321 aaPredicted RBP17.02■□□□□ 0.32
CUX1-204ENST00000393824 TNIKQ9UKE5 1360 aa17.02■□□□□ 0.32
CUX1-204ENST00000393824 CUL7Q14999 1698 aa16.99■□□□□ 0.31
CUX1-204ENST00000393824 ADAMTS12P58397 1594 aa16.98■□□□□ 0.31
CUX1-204ENST00000393824 FHAD1B1AJZ9 1412 aa16.97■□□□□ 0.31
CUX1-204ENST00000393824 CEP162Q5TB80 1403 aa16.97■□□□□ 0.31
CUX1-204ENST00000393824 GTF3C3Q9Y5Q9 886 aa16.97■□□□□ 0.31
CUX1-204ENST00000393824 CENPBP07199 599 aaPredicted RBP16.96■□□□□ 0.3
CUX1-204ENST00000393824 FBLN2P98095 1184 aa16.94■□□□□ 0.3
CUX1-204ENST00000393824 MAGI1Q96QZ7 1491 aaPredicted RBP16.91■□□□□ 0.3
CUX1-204ENST00000393824 CHMP7Q8WUX9 453 aaPredicted RBP16.89■□□□□ 0.29
CUX1-204ENST00000393824 SYNJ2O15056 1496 aa16.88■□□□□ 0.29
CUX1-204ENST00000393824 GRIN2AQ12879 1464 aa16.88■□□□□ 0.29
CUX1-204ENST00000393824 CLIP1P30622 1438 aa16.87■□□□□ 0.29
CUX1-204ENST00000393824 DIEXFQ68CQ4 756 aaKnown RBP16.82■□□□□ 0.28
CUX1-204ENST00000393824 CEP170Q5SW79 1584 aa16.81■□□□□ 0.28
CUX1-204ENST00000393824 ARHGAP35Q9NRY4 1499 aa16.8■□□□□ 0.28
CUX1-204ENST00000393824 P3H3Q8IVL6 736 aa16.8■□□□□ 0.28
CUX1-204ENST00000393824 ARAP1Q96P48 1450 aa16.79■□□□□ 0.28
CUX1-204ENST00000393824 CTTNBP2Q8WZ74 1663 aa16.78■□□□□ 0.28
CUX1-204ENST00000393824 NUP160Q12769 1436 aa16.77■□□□□ 0.28
CUX1-204ENST00000393824 CHD1O14646 1710 aa16.77■□□□□ 0.27
CUX1-204ENST00000393824 KIAA0586Q9BVV6 1533 aa16.73■□□□□ 0.27
CUX1-204ENST00000393824 IQGAP2Q13576 1575 aa16.73■□□□□ 0.27
CUX1-204ENST00000393824 CCER1Q8TC90 406 aaPredicted RBP16.73■□□□□ 0.27
CUX1-204ENST00000393824 FHOD3Q2V2M9 1422 aa16.72■□□□□ 0.27
CUX1-204ENST00000393824 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.72■□□□□ 0.27
CUX1-204ENST00000393824 VPS8Q8N3P4 1428 aa16.67■□□□□ 0.26
CUX1-204ENST00000393824 JPH4Q96JJ6 628 aa16.66■□□□□ 0.26
CUX1-204ENST00000393824 DISP1Q96F81 1524 aa16.66■□□□□ 0.26
CUX1-204ENST00000393824 SAMD9Q5K651 1589 aa16.66■□□□□ 0.26
CUX1-204ENST00000393824 UGGT2Q9NYU1 1516 aa16.64■□□□□ 0.25
CUX1-204ENST00000393824 EFCAB5A4FU69 1503 aa16.62■□□□□ 0.25
CUX1-204ENST00000393824 ERCC6L2Q5T890 1561 aa16.59■□□□□ 0.25
CUX1-204ENST00000393824 CLASP1Q7Z460 1538 aa16.58■□□□□ 0.25
CUX1-204ENST00000393824 KIAA0556O60303 1618 aa16.58■□□□□ 0.24
CUX1-204ENST00000393824 PRG4Q92954 1404 aaPredicted RBP16.57■□□□□ 0.24
CUX1-204ENST00000393824 PCF11O94913 1555 aaKnown RBP16.55■□□□□ 0.24
CUX1-204ENST00000393824 OSCARQ8IYS5 282 aa16.54■□□□□ 0.24
CUX1-204ENST00000393824 ATP1B4Q9UN42 357 aaPredicted RBP16.53■□□□□ 0.24
CUX1-204ENST00000393824 ZNF316A6NFI3 1004 aaPredicted RBP16.53■□□□□ 0.24
CUX1-204ENST00000393824 SHROOM2Q13796 1616 aa16.53■□□□□ 0.24
CUX1-204ENST00000393824 ARID3CA6NKF2 412 aa16.52■□□□□ 0.23
CUX1-204ENST00000393824 KANK4Q5T7N3 995 aaPredicted RBP16.52■□□□□ 0.23
CUX1-204ENST00000393824 FMN1Q68DA7 1419 aa16.5■□□□□ 0.23
CUX1-204ENST00000393824 BCL11AQ9H165 835 aa16.48■□□□□ 0.23
CUX1-204ENST00000393824 PLB1Q6P1J6 1458 aa16.48■□□□□ 0.23
CUX1-204ENST00000393824 CARMIL2Q6F5E8 1435 aa16.48■□□□□ 0.23
CUX1-204ENST00000393824 CASKIN1Q8WXD9 1431 aa16.48■□□□□ 0.23
CUX1-204ENST00000393824 LRRIQ1Q96JM4 1722 aa16.44■□□□□ 0.22
CUX1-204ENST00000393824 FYCO1Q9BQS8 1478 aa16.44■□□□□ 0.22
CUX1-204ENST00000393824 PTPRGP23470 1445 aa16.42■□□□□ 0.22
CUX1-204ENST00000393824 APLP2Q06481 763 aa16.41■□□□□ 0.22
CUX1-204ENST00000393824 NUP153P49790 1475 aaKnown RBP16.41■□□□□ 0.22
CUX1-204ENST00000393824 CDK13Q14004 1512 aaKnown RBP16.4■□□□□ 0.22
CUX1-204ENST00000393824 TIAM1Q13009 1591 aa16.39■□□□□ 0.22
CUX1-204ENST00000393824 YTHDC1Q96MU7 727 aaKnown RBP16.39■□□□□ 0.21
CUX1-204ENST00000393824 EPRSP07814 1512 aaKnown RBP16.37■□□□□ 0.21
CUX1-204ENST00000393824 RAPGEF6Q8TEU7 1601 aa16.36■□□□□ 0.21
CUX1-204ENST00000393824 MAGI3Q5TCQ9 1506 aa16.36■□□□□ 0.21
CUX1-204ENST00000393824 MIER1Q8N108 512 aa16.36■□□□□ 0.21
CUX1-204ENST00000393824 ABCA8O94911 1581 aa16.35■□□□□ 0.21
CUX1-204ENST00000393824 PRKCSHP14314 528 aaPredicted RBP16.35■□□□□ 0.21
CUX1-204ENST00000393824 LRRC9Q6ZRR7 1453 aa16.34■□□□□ 0.21
CUX1-204ENST00000393824 CLSPNQ9HAW4 1339 aa16.34■□□□□ 0.21
CUX1-204ENST00000393824 HECW1Q76N89 1606 aa16.33■□□□□ 0.21
CUX1-204ENST00000393824 CFAP43Q8NDM7 1665 aa16.33■□□□□ 0.2
CUX1-204ENST00000393824 MAP3K1Q13233 1512 aa16.32■□□□□ 0.2
CUX1-204ENST00000393824 UACAQ9BZF9 1416 aa16.31■□□□□ 0.2
CUX1-204ENST00000393824 ARHGEF11O15085 1522 aa16.3■□□□□ 0.2
CUX1-204ENST00000393824 HNRNPUL2Q1KMD3 747 aaKnown RBP16.3■□□□□ 0.2
CUX1-204ENST00000393824 ATP10BO94823 1461 aa16.29■□□□□ 0.2
CUX1-204ENST00000393824 CCDC18Q5T9S5 1454 aa16.27■□□□□ 0.19
CUX1-204ENST00000393824 MTUS2Q5JR59 1369 aa16.27■□□□□ 0.19
CUX1-204ENST00000393824 PHLDB1Q86UU1 1377 aa16.27■□□□□ 0.19
CUX1-204ENST00000393824 ABCC2Q92887 1545 aa16.25■□□□□ 0.19
CUX1-204ENST00000393824 ADCY10Q96PN6 1610 aa16.23■□□□□ 0.19
CUX1-204ENST00000393824 ANP32EQ9BTT0 268 aa16.22■□□□□ 0.19
CUX1-204ENST00000393824 CYB5RLQ6IPT4 315 aa16.22■□□□□ 0.19
CUX1-204ENST00000393824 RIMBP3CA6NJZ7 1639 aa16.21■□□□□ 0.19
CUX1-204ENST00000393824 RIMBP3BA6NNM3 1639 aa16.21■□□□□ 0.19
CUX1-204ENST00000393824 RIMBP3Q9UFD9 1639 aa16.21■□□□□ 0.19
CUX1-204ENST00000393824 NCOA2Q15596 1464 aa16.2■□□□□ 0.18
CUX1-204ENST00000393824 EHBP1L1Q8N3D4 1523 aa16.19■□□□□ 0.18
CUX1-204ENST00000393824 UHRF1BP1LA0JNW5 1464 aa16.19■□□□□ 0.18
CUX1-204ENST00000393824 SUPT16HQ9Y5B9 1047 aaKnown RBP16.18■□□□□ 0.18
CUX1-204ENST00000393824 KDM5BQ9UGL1 1544 aa16.17■□□□□ 0.18
CUX1-204ENST00000393824 KIF14Q15058 1648 aa16.17■□□□□ 0.18
CUX1-204ENST00000393824 TROQ12816 1431 aaPredicted RBP16.16■□□□□ 0.18
CUX1-204ENST00000393824 ZCCHC11Q5TAX3 1644 aaKnown RBP16.15■□□□□ 0.18
CUX1-204ENST00000393824 PLEKHD1A6NEE1 506 aa16.15■□□□□ 0.18
CUX1-204ENST00000393824 CDK11AQ9UQ88 783 aaPredicted RBP16.14■□□□□ 0.17
CUX1-204ENST00000393824 TSHZ2Q9NRE2 1034 aa16.13■□□□□ 0.17
CUX1-204ENST00000393824 RRBP1Q9P2E9 1410 aaKnown RBP16.13■□□□□ 0.17
CUX1-204ENST00000393824 KCNH8Q96L42 1107 aa16.12■□□□□ 0.17
CUX1-204ENST00000393824 SUPT6HQ7KZ85 1726 aaKnown RBP16.12■□□□□ 0.17
CUX1-204ENST00000393824 CCNB3Q8WWL7 1395 aa16.11■□□□□ 0.17
CUX1-204ENST00000393824 MYOM3Q5VTT5 1437 aa16.09■□□□□ 0.17
CUX1-204ENST00000393824 ERICH6Q7L0X2 663 aa16.09■□□□□ 0.17
CUX1-204ENST00000393824 FGD6Q6ZV73 1430 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms