RNA–Protein interactions for RNA: ENST00000389759.7

PKP4-202, Transcript of plakophilin 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PKP4, Length 4,443 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-202ENST00000389759 TSHZ2Q9NRE2 1034 aa11.52□□□□□ -0.57
PKP4-202ENST00000389759 MTUS2Q5JR59 1369 aa11.5□□□□□ -0.57
PKP4-202ENST00000389759 DEKP35659 375 aaKnown RBP11.49□□□□□ -0.57
PKP4-202ENST00000389759 WDR43Q15061 677 aaKnown RBP eCLIP11.48□□□□□ -0.57
PKP4-202ENST00000389759 RTN4Q9NQC3 1192 aaKnown RBP11.48□□□□□ -0.57
PKP4-202ENST00000389759 FBLN2P98095 1184 aa11.48□□□□□ -0.57
PKP4-202ENST00000389759 B4GALNT3Q6L9W6 998 aa11.48□□□□□ -0.57
PKP4-202ENST00000389759 SIN3AQ96ST3 1273 aa11.47□□□□□ -0.57
PKP4-202ENST00000389759 ERICH6BQ5W0A0 696 aa11.46□□□□□ -0.57
PKP4-202ENST00000389759 CCER2I3L3R5 266 aa11.46□□□□□ -0.58
PKP4-202ENST00000389759 LAS1LQ9Y4W2 734 aaKnown RBP11.46□□□□□ -0.58
PKP4-202ENST00000389759 BECN1Q14457 450 aa11.45□□□□□ -0.58
PKP4-202ENST00000389759 CEP164Q9UPV0 1460 aa11.44□□□□□ -0.58
PKP4-202ENST00000389759 RRP7BPQ9NSQ0 103 aa11.44□□□□□ -0.58
PKP4-202ENST00000389759 KDM2AQ9Y2K7 1162 aa11.44□□□□□ -0.58
PKP4-202ENST00000389759 RB1CC1Q8TDY2 1594 aa11.43□□□□□ -0.58
PKP4-202ENST00000389759 SENP3-EIF4A1A0A087X0R7 540 aa11.43□□□□□ -0.58
PKP4-202ENST00000389759 WRNQ14191 1432 aaPredicted RBP eCLIP11.42□□□□□ -0.58
PKP4-202ENST00000389759 TIMELESSQ9UNS1 1208 aa11.42□□□□□ -0.58
PKP4-202ENST00000389759 TRIM44Q96DX7 344 aaPredicted RBP11.41□□□□□ -0.58
PKP4-202ENST00000389759 CCNB3Q8WWL7 1395 aa11.39□□□□□ -0.59
PKP4-202ENST00000389759 SLC24A1O60721 1099 aa11.38□□□□□ -0.59
PKP4-202ENST00000389759 TSPY4P0CV99 314 aa11.36□□□□□ -0.59
PKP4-202ENST00000389759 TSPY10P0CW01 314 aa11.36□□□□□ -0.59
PKP4-202ENST00000389759 NACADO15069 1562 aa11.35□□□□□ -0.59
PKP4-202ENST00000389759 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.34□□□□□ -0.596e-10■■□□□ 12.1
PKP4-202ENST00000389759 SOGA1O94964 1423 aa11.33□□□□□ -0.6
PKP4-202ENST00000389759 NAP1L5Q96NT1 182 aaPredicted RBP11.32□□□□□ -0.6
PKP4-202ENST00000389759 GOLGA6L22H0YM25 854 aa11.32□□□□□ -0.6
PKP4-202ENST00000389759 VPS8Q8N3P4 1428 aa11.32□□□□□ -0.6
PKP4-202ENST00000389759 RGS3P49796 1198 aa11.32□□□□□ -0.6
PKP4-202ENST00000389759 CHGAP10645 457 aaKnown RBP11.32□□□□□ -0.6
PKP4-202ENST00000389759 CARD11Q9BXL7 1154 aa11.3□□□□□ -0.6
PKP4-202ENST00000389759 KIF27Q86VH2 1401 aa11.29□□□□□ -0.6
PKP4-202ENST00000389759 SETD5Q9C0A6 1442 aa11.27□□□□□ -0.61
PKP4-202ENST00000389759 MYH16Q9H6N6 1097 aa11.27□□□□□ -0.61
PKP4-202ENST00000389759 KNSTRNQ9Y448 316 aa11.25□□□□□ -0.61
PKP4-202ENST00000389759 RGL3Q3MIN7 710 aa11.25□□□□□ -0.61
PKP4-202ENST00000389759 KANK4Q5T7N3 995 aaPredicted RBP11.25□□□□□ -0.61
PKP4-202ENST00000389759 HSPA5P11021 654 aaKnown RBP11.25□□□□□ -0.61
PKP4-202ENST00000389759 IPO9Q96P70 1041 aaKnown RBP11.25□□□□□ -0.61
PKP4-202ENST00000389759 TNNT2P45379 298 aaPredicted RBP11.24□□□□□ -0.61
PKP4-202ENST00000389759 NCLP19338 710 aaKnown RBP11.23□□□□□ -0.61
PKP4-202ENST00000389759 PPP1R15AO75807 674 aaPredicted RBP11.23□□□□□ -0.61
PKP4-202ENST00000389759 CECR2Q9BXF3 1484 aa11.23□□□□□ -0.61
PKP4-202ENST00000389759 RAB3GAP2Q9H2M9 1393 aa11.23□□□□□ -0.61
PKP4-202ENST00000389759 TCERG1O14776 1098 aaKnown RBP11.23□□□□□ -0.61
PKP4-202ENST00000389759 KCNH8Q96L42 1107 aa11.23□□□□□ -0.61
PKP4-202ENST00000389759 L1TD1Q5T7N2 865 aaKnown RBP11.22□□□□□ -0.61
PKP4-202ENST00000389759 CDCA8Q53HL2 280 aa11.22□□□□□ -0.61
PKP4-202ENST00000389759 PTMAP06454 111 aaKnown RBP11.21□□□□□ -0.61
PKP4-202ENST00000389759 FHAD1B1AJZ9 1412 aa11.2□□□□□ -0.62
PKP4-202ENST00000389759 FTSJ3Q8IY81 847 aaKnown RBP11.2□□□□□ -0.62
PKP4-202ENST00000389759 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.2□□□□□ -0.62
PKP4-202ENST00000389759 CCDC88BA6NC98 1476 aa11.19□□□□□ -0.62
PKP4-202ENST00000389759 FANCIQ9NVI1 1328 aa11.19□□□□□ -0.62
PKP4-202ENST00000389759 DNTTIP2Q5QJE6 756 aaKnown RBP11.19□□□□□ -0.62
PKP4-202ENST00000389759 FRAT1Q92837 279 aaPredicted RBP11.19□□□□□ -0.62
PKP4-202ENST00000389759 CFDP1Q9UEE9 299 aaPredicted RBP11.19□□□□□ -0.62
PKP4-202ENST00000389759 NEUROD2Q15784 382 aa11.18□□□□□ -0.62
PKP4-202ENST00000389759 CFAP53Q96M91 514 aa11.18□□□□□ -0.62
PKP4-202ENST00000389759 RCAN3Q9UKA8 241 aa11.18□□□□□ -0.62
PKP4-202ENST00000389759 CC2D1BQ5T0F9 858 aaKnown RBP11.17□□□□□ -0.62
PKP4-202ENST00000389759 BAZ1AQ9NRL2 1556 aaPredicted RBP11.17□□□□□ -0.62
PKP4-202ENST00000389759 DHX57Q6P158 1386 aaKnown RBP11.17□□□□□ -0.62
PKP4-202ENST00000389759 NUDCQ9Y266 331 aa11.17□□□□□ -0.62
PKP4-202ENST00000389759 STAG3Q9UJ98 1225 aa11.15□□□□□ -0.62
PKP4-202ENST00000389759 USP35Q9P2H5 1018 aa11.15□□□□□ -0.62
PKP4-202ENST00000389759 HSP90AB1P08238 724 aaKnown RBP11.15□□□□□ -0.63
PKP4-202ENST00000389759 PNNQ9H307 717 aaKnown RBP11.14□□□□□ -0.63
PKP4-202ENST00000389759 PLEKHD1A6NEE1 506 aa11.14□□□□□ -0.63
PKP4-202ENST00000389759 ABCC8Q09428 1581 aa11.13□□□□□ -0.63
PKP4-202ENST00000389759 BAZ1BQ9UIG0 1483 aaKnown RBP11.13□□□□□ -0.63
PKP4-202ENST00000389759 HSCBQ8IWL3 235 aa11.13□□□□□ -0.63
PKP4-202ENST00000389759 MS4A1P11836 297 aa11.12□□□□□ -0.63
PKP4-202ENST00000389759 DCAF11Q8TEB1 546 aa11.11□□□□□ -0.63
PKP4-202ENST00000389759 SLKQ9H2G2 1235 aaPredicted RBP11.11□□□□□ -0.63
PKP4-202ENST00000389759 CASC1Q6TDU7 716 aa11.1□□□□□ -0.63
PKP4-202ENST00000389759 CARMIL1Q5VZK9 1371 aa11.1□□□□□ -0.63
PKP4-202ENST00000389759 MSNP26038 577 aaKnown RBP11.1□□□□□ -0.63
PKP4-202ENST00000389759 TMF1P82094 1093 aa11.1□□□□□ -0.63
PKP4-202ENST00000389759 ARHGAP35Q9NRY4 1499 aa11.1□□□□□ -0.63
PKP4-202ENST00000389759 MROH2BQ7Z745 1585 aa11.1□□□□□ -0.63
PKP4-202ENST00000389759 SPRYD3Q8NCJ5 442 aa11.09□□□□□ -0.63
PKP4-202ENST00000389759 RALBP1Q15311 655 aa11.08□□□□□ -0.63
PKP4-202ENST00000389759 CHMP7Q8WUX9 453 aaPredicted RBP11.08□□□□□ -0.63
PKP4-202ENST00000389759 KTN1Q86UP2 1357 aaKnown RBP11.08□□□□□ -0.64
PKP4-202ENST00000389759 FOXD1Q16676 465 aa11.08□□□□□ -0.64
PKP4-202ENST00000389759 GZF1Q9H116 711 aaPredicted RBP11.08□□□□□ -0.64
PKP4-202ENST00000389759 MAPK8IP3Q9UPT6 1336 aa11.07□□□□□ -0.64
PKP4-202ENST00000389759 ARID4BQ4LE39 1312 aaPredicted RBP11.07□□□□□ -0.64
PKP4-202ENST00000389759 CHMP4BQ9H444 224 aaKnown RBP11.07□□□□□ -0.64
PKP4-202ENST00000389759 PLCB2Q00722 1185 aa11.06□□□□□ -0.64
PKP4-202ENST00000389759 MPHOSPH9Q99550 1183 aa11.06□□□□□ -0.64
PKP4-202ENST00000389759 L3MBTL2Q969R5 705 aa11.06□□□□□ -0.64
PKP4-202ENST00000389759 PDE3BQ13370 1112 aa11.06□□□□□ -0.64
PKP4-202ENST00000389759 PDE4AP27815 886 aa11.06□□□□□ -0.64
PKP4-202ENST00000389759 ZBED9Q6R2W3 1325 aa11.05□□□□□ -0.64
PKP4-202ENST00000389759 ESF1Q9H501 851 aaKnown RBP11.05□□□□□ -0.64
PKP4-202ENST00000389759 GOLGA6L3A6NEY3 463 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms