RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 RTN4Q9NQC3 1192 aaKnown RBP19.42■□□□□ 0.7
RTF1-201ENST00000389629 MRS2Q9HD23 443 aa19.4■□□□□ 0.7
RTF1-201ENST00000389629 SENP3-EIF4A1A0A087X0R7 540 aa19.38■□□□□ 0.69
RTF1-201ENST00000389629 DEKP35659 375 aaKnown RBP19.37■□□□□ 0.69
RTF1-201ENST00000389629 SALL2Q9Y467 1007 aaPredicted RBP19.37■□□□□ 0.69
RTF1-201ENST00000389629 TOP2AP11388 1531 aaKnown RBP19.37■□□□□ 0.69
RTF1-201ENST00000389629 DHX57Q6P158 1386 aaKnown RBP19.35■□□□□ 0.69
RTF1-201ENST00000389629 BAZ1BQ9UIG0 1483 aaKnown RBP19.34■□□□□ 0.69
RTF1-201ENST00000389629 KIF27Q86VH2 1401 aa19.32■□□□□ 0.68
RTF1-201ENST00000389629 B4GALNT3Q6L9W6 998 aa19.31■□□□□ 0.68
RTF1-201ENST00000389629 MTUS2Q5JR59 1369 aa19.3■□□□□ 0.68
RTF1-201ENST00000389629 RAPGEF2Q9Y4G8 1499 aa19.29■□□□□ 0.68
RTF1-201ENST00000389629 EIF4G2P78344 907 aaKnown RBP eCLIP19.29■□□□□ 0.68
RTF1-201ENST00000389629 RRP7BPQ9NSQ0 103 aa19.28■□□□□ 0.68
RTF1-201ENST00000389629 RAB3GAP2Q9H2M9 1393 aa19.28■□□□□ 0.68
RTF1-201ENST00000389629 NOP58Q9Y2X3 529 aaKnown RBP19.27■□□□□ 0.68
RTF1-201ENST00000389629 PPP4R2Q9NY27 417 aa19.25■□□□□ 0.67
RTF1-201ENST00000389629 CCER2I3L3R5 266 aa19.25■□□□□ 0.67
RTF1-201ENST00000389629 SETD5Q9C0A6 1442 aa19.23■□□□□ 0.67
RTF1-201ENST00000389629 LAS1LQ9Y4W2 734 aaKnown RBP19.2■□□□□ 0.66
RTF1-201ENST00000389629 ZNF777Q9ULD5 760 aaPredicted RBP19.2■□□□□ 0.66
RTF1-201ENST00000389629 TMC1Q8TDI8 760 aa19.19■□□□□ 0.66
RTF1-201ENST00000389629 ARXQ96QS3 562 aa19.19■□□□□ 0.66
RTF1-201ENST00000389629 TIMELESSQ9UNS1 1208 aa19.17■□□□□ 0.66
RTF1-201ENST00000389629 SLC4A1APQ9BWU0 796 aaKnown RBP19.15■□□□□ 0.66
RTF1-201ENST00000389629 SMARCA2P51531 1590 aa19.12■□□□□ 0.65
RTF1-201ENST00000389629 SMARCA4P51532 1647 aa19.12■□□□□ 0.65
RTF1-201ENST00000389629 PPP1R15AO75807 674 aaPredicted RBP19.12■□□□□ 0.65
RTF1-201ENST00000389629 NEFMP07197 916 aa19.12■□□□□ 0.65
RTF1-201ENST00000389629 CANXP27824 592 aaKnown RBP19.08■□□□□ 0.64
RTF1-201ENST00000389629 CARMIL1Q5VZK9 1371 aa19.05■□□□□ 0.64
RTF1-201ENST00000389629 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.05■□□□□ 0.64
RTF1-201ENST00000389629 CUX2O14529 1486 aa19.04■□□□□ 0.64
RTF1-201ENST00000389629 HSPA5P11021 654 aaKnown RBP19.04■□□□□ 0.64
RTF1-201ENST00000389629 FHAD1B1AJZ9 1412 aa19.04■□□□□ 0.64
RTF1-201ENST00000389629 KDM2AQ9Y2K7 1162 aa19.03■□□□□ 0.64
RTF1-201ENST00000389629 FBLN2P98095 1184 aa19.02■□□□□ 0.64
RTF1-201ENST00000389629 GLIPR1L2Q4G1C9 344 aa19.01■□□□□ 0.63
RTF1-201ENST00000389629 KIF21BO75037 1637 aa19.01■□□□□ 0.63
RTF1-201ENST00000389629 ARHGAP35Q9NRY4 1499 aa18.97■□□□□ 0.63
RTF1-201ENST00000389629 PPM1GO15355 546 aaPredicted RBP18.96■□□□□ 0.63
RTF1-201ENST00000389629 FOXD1Q16676 465 aa18.92■□□□□ 0.62
RTF1-201ENST00000389629 DDRGK1Q96HY6 314 aa18.92■□□□□ 0.62
RTF1-201ENST00000389629 ERICH6BQ5W0A0 696 aa18.9■□□□□ 0.62
RTF1-201ENST00000389629 FANCIQ9NVI1 1328 aa18.88■□□□□ 0.61
RTF1-201ENST00000389629 ATAD2BQ9ULI0 1458 aa18.87■□□□□ 0.61
RTF1-201ENST00000389629 UPF2Q9HAU5 1272 aaKnown RBP18.86■□□□□ 0.61
RTF1-201ENST00000389629 SYNJ1O43426 1573 aa18.84■□□□□ 0.61
RTF1-201ENST00000389629 IPO9Q96P70 1041 aaKnown RBP18.84■□□□□ 0.61
RTF1-201ENST00000389629 CARD11Q9BXL7 1154 aa18.82■□□□□ 0.6
RTF1-201ENST00000389629 FHOD3Q2V2M9 1422 aa18.82■□□□□ 0.6
RTF1-201ENST00000389629 ARAP1Q96P48 1450 aa18.81■□□□□ 0.6
RTF1-201ENST00000389629 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.8■□□□□ 0.66e-9■■■□□ 16
RTF1-201ENST00000389629 RRBP1Q9P2E9 1410 aaKnown RBP18.8■□□□□ 0.6
RTF1-201ENST00000389629 L3MBTL2Q969R5 705 aa18.79■□□□□ 0.6
RTF1-201ENST00000389629 HSP90AA1P07900 732 aaKnown RBP18.79■□□□□ 0.6
RTF1-201ENST00000389629 RGS3P49796 1198 aa18.78■□□□□ 0.6
RTF1-201ENST00000389629 MPHOSPH9Q99550 1183 aa18.78■□□□□ 0.6
RTF1-201ENST00000389629 WDR43Q15061 677 aaKnown RBP eCLIP18.78■□□□□ 0.6
RTF1-201ENST00000389629 TSPY4P0CV99 314 aa18.77■□□□□ 0.6
RTF1-201ENST00000389629 TSPY10P0CW01 314 aa18.77■□□□□ 0.6
RTF1-201ENST00000389629 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.77■□□□□ 0.6
RTF1-201ENST00000389629 PHLDB1Q86UU1 1377 aa18.77■□□□□ 0.59
RTF1-201ENST00000389629 ANP32BQ92688 251 aaKnown RBP18.75■□□□□ 0.59
RTF1-201ENST00000389629 RGL3Q3MIN7 710 aa18.75■□□□□ 0.59
RTF1-201ENST00000389629 FMN1Q68DA7 1419 aa18.74■□□□□ 0.59
RTF1-201ENST00000389629 NAP1L5Q96NT1 182 aaPredicted RBP18.74■□□□□ 0.59
RTF1-201ENST00000389629 CFDP1Q9UEE9 299 aaPredicted RBP18.73■□□□□ 0.59
RTF1-201ENST00000389629 PRKRIP1Q9H875 184 aaPredicted RBP18.72■□□□□ 0.59
RTF1-201ENST00000389629 ANO8Q9HCE9 1232 aaPredicted RBP18.72■□□□□ 0.59
RTF1-201ENST00000389629 MSH5O43196 834 aa18.71■□□□□ 0.59
RTF1-201ENST00000389629 NUDCQ9Y266 331 aa18.71■□□□□ 0.58
RTF1-201ENST00000389629 BECN1Q14457 450 aa18.69■□□□□ 0.58
RTF1-201ENST00000389629 CCDC18Q5T9S5 1454 aa18.68■□□□□ 0.58
RTF1-201ENST00000389629 CC2D1BQ5T0F9 858 aaKnown RBP18.66■□□□□ 0.58
RTF1-201ENST00000389629 IGF1RP08069 1367 aa18.66■□□□□ 0.58
RTF1-201ENST00000389629 WDR97A6NE52 1622 aa18.65■□□□□ 0.58
RTF1-201ENST00000389629 ZBED9Q6R2W3 1325 aa18.65■□□□□ 0.58
RTF1-201ENST00000389629 LRRC9Q6ZRR7 1453 aa18.65■□□□□ 0.58
RTF1-201ENST00000389629 EIF4G1Q04637 1599 aaKnown RBP18.64■□□□□ 0.57
RTF1-201ENST00000389629 PRKCSHP14314 528 aaPredicted RBP18.63■□□□□ 0.57
RTF1-201ENST00000389629 ERICH3Q5RHP9 1530 aa18.63■□□□□ 0.57
RTF1-201ENST00000389629 PRXQ9BXM0 1461 aa18.63■□□□□ 0.57
RTF1-201ENST00000389629 TRIM44Q96DX7 344 aaPredicted RBP18.63■□□□□ 0.57
RTF1-201ENST00000389629 DCAF11Q8TEB1 546 aa18.62■□□□□ 0.57
RTF1-201ENST00000389629 RCAN3Q9UKA8 241 aa18.62■□□□□ 0.57
RTF1-201ENST00000389629 PAK3O75914 559 aaPredicted RBP18.62■□□□□ 0.57
RTF1-201ENST00000389629 TCERG1O14776 1098 aaKnown RBP18.61■□□□□ 0.57
RTF1-201ENST00000389629 WASHC2AQ641Q2 1341 aa18.61■□□□□ 0.57
RTF1-201ENST00000389629 PKD2Q13563 968 aa18.6■□□□□ 0.57
RTF1-201ENST00000389629 SLC4A3P48751 1232 aa18.59■□□□□ 0.57
RTF1-201ENST00000389629 TDRD9Q8NDG6 1382 aaKnown RBP18.58■□□□□ 0.57
RTF1-201ENST00000389629 IL27Q8NEV9 243 aa18.58■□□□□ 0.57
RTF1-201ENST00000389629 ARID4BQ4LE39 1312 aaPredicted RBP18.58■□□□□ 0.56
RTF1-201ENST00000389629 PLEKHD1A6NEE1 506 aa18.56■□□□□ 0.56
RTF1-201ENST00000389629 FGD6Q6ZV73 1430 aa18.55■□□□□ 0.56
RTF1-201ENST00000389629 KNSTRNQ9Y448 316 aa18.55■□□□□ 0.56
RTF1-201ENST00000389629 CHMP7Q8WUX9 453 aaPredicted RBP18.55■□□□□ 0.56
RTF1-201ENST00000389629 UACAQ9BZF9 1416 aa18.54■□□□□ 0.56
RTF1-201ENST00000389629 PDE4AP27815 886 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 239 ms