RNA–Protein interactions for RNA: ENST00000380829.5

CLCN4-201, Transcript of chloride voltage-gated channel 4, humanhuman

TSL 5 BASIC

Gene CLCN4, Length 2,418 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-201ENST00000380829 MYT1Q01538 1121 aa21.58■■□□□ 1.04
CLCN4-201ENST00000380829 HNRNPUL2Q1KMD3 747 aaKnown RBP21.58■■□□□ 1.04
CLCN4-201ENST00000380829 CTTNBP2Q8WZ74 1663 aa21.57■■□□□ 1.04
CLCN4-201ENST00000380829 AQRO60306 1485 aaKnown RBP eCLIP21.56■■□□□ 1.04
CLCN4-201ENST00000380829 WDR62O43379 1518 aa21.54■■□□□ 1.04
CLCN4-201ENST00000380829 ERCC6Q03468 1493 aa21.53■■□□□ 1.04
CLCN4-201ENST00000380829 FHOD3Q2V2M9 1422 aa21.53■■□□□ 1.04
CLCN4-201ENST00000380829 PBRM1Q86U86 1689 aa21.51■■□□□ 1.03
CLCN4-201ENST00000380829 EFCAB5A4FU69 1503 aa21.49■■□□□ 1.03
CLCN4-201ENST00000380829 FHAD1B1AJZ9 1412 aa21.48■■□□□ 1.03
CLCN4-201ENST00000380829 ZNF608Q9ULD9 1512 aaPredicted RBP21.47■■□□□ 1.03
CLCN4-201ENST00000380829 IFT140Q96RY7 1462 aa21.47■■□□□ 1.03
CLCN4-201ENST00000380829 PCF11O94913 1555 aaKnown RBP21.46■■□□□ 1.03
CLCN4-201ENST00000380829 TIAM1Q13009 1591 aa21.46■■□□□ 1.03
CLCN4-201ENST00000380829 ATP1B4Q9UN42 357 aaPredicted RBP21.45■■□□□ 1.02
CLCN4-201ENST00000380829 GRIN2BQ13224 1484 aa21.42■■□□□ 1.02
CLCN4-201ENST00000380829 ADAMTS12P58397 1594 aa21.42■■□□□ 1.02
CLCN4-201ENST00000380829 ACIN1Q9UKV3 1341 aaKnown RBP21.41■■□□□ 1.02
CLCN4-201ENST00000380829 NEUROD1Q13562 356 aa21.41■■□□□ 1.02
CLCN4-201ENST00000380829 MAP3K1Q13233 1512 aa21.41■■□□□ 1.02
CLCN4-201ENST00000380829 THOC2Q8NI27 1593 aaKnown RBP21.4■■□□□ 1.02
CLCN4-201ENST00000380829 RRBP1Q9P2E9 1410 aaKnown RBP21.38■■□□□ 1.01
CLCN4-201ENST00000380829 LRRC9Q6ZRR7 1453 aa21.37■■□□□ 1.01
CLCN4-201ENST00000380829 SAMD9Q5K651 1589 aa21.37■■□□□ 1.01
CLCN4-201ENST00000380829 FYCO1Q9BQS8 1478 aa21.36■■□□□ 1.01
CLCN4-201ENST00000380829 CASKIN1Q8WXD9 1431 aa21.35■■□□□ 1.01
CLCN4-201ENST00000380829 CFAP43Q8NDM7 1665 aa21.34■■□□□ 1.01
CLCN4-201ENST00000380829 FMN1Q68DA7 1419 aa21.34■■□□□ 1.01
CLCN4-201ENST00000380829 EIF4G3O43432 1585 aaKnown RBP21.33■■□□□ 1.01
CLCN4-201ENST00000380829 CCNB3Q8WWL7 1395 aa21.32■■□□□ 1
CLCN4-201ENST00000380829 SNAPC4Q5SXM2 1469 aa21.31■■□□□ 1
CLCN4-201ENST00000380829 GTF3C3Q9Y5Q9 886 aa21.29■■□□□ 1
CLCN4-201ENST00000380829 IQGAP2Q13576 1575 aa21.29■■□□□ 1
CLCN4-201ENST00000380829 PHLDB1Q86UU1 1377 aa21.27■□□□□ 0.99
CLCN4-201ENST00000380829 ITGAEP38570 1179 aa21.25■□□□□ 0.99
CLCN4-201ENST00000380829 GRIN2AQ12879 1464 aa21.2■□□□□ 0.98
CLCN4-201ENST00000380829 LRRIQ1Q96JM4 1722 aa21.19■□□□□ 0.98
CLCN4-201ENST00000380829 MAGI1Q96QZ7 1491 aaPredicted RBP21.17■□□□□ 0.98
CLCN4-201ENST00000380829 KIAA0586Q9BVV6 1533 aa21.15■□□□□ 0.98
CLCN4-201ENST00000380829 FAM50AQ14320 339 aaKnown RBP21.15■□□□□ 0.98
CLCN4-201ENST00000380829 MTUS2Q5JR59 1369 aa21.15■□□□□ 0.98
CLCN4-201ENST00000380829 UGGT2Q9NYU1 1516 aa21.15■□□□□ 0.98
CLCN4-201ENST00000380829 CHMP7Q8WUX9 453 aaPredicted RBP21.15■□□□□ 0.98
CLCN4-201ENST00000380829 FBLN2P98095 1184 aa21.14■□□□□ 0.97
CLCN4-201ENST00000380829 SYNJ2O15056 1496 aa21.12■□□□□ 0.97
CLCN4-201ENST00000380829 DHX57Q6P158 1386 aaKnown RBP21.1■□□□□ 0.97
CLCN4-201ENST00000380829 DISP1Q96F81 1524 aa21.08■□□□□ 0.96
CLCN4-201ENST00000380829 CEP170Q5SW79 1584 aa21.07■□□□□ 0.96
CLCN4-201ENST00000380829 HECW1Q76N89 1606 aa21.07■□□□□ 0.96
CLCN4-201ENST00000380829 KIAA0556O60303 1618 aa21.06■□□□□ 0.96
CLCN4-201ENST00000380829 ARID3CA6NKF2 412 aa21.06■□□□□ 0.96
CLCN4-201ENST00000380829 CENPBP07199 599 aaPredicted RBP21.05■□□□□ 0.96
CLCN4-201ENST00000380829 CCDC18Q5T9S5 1454 aa21.05■□□□□ 0.96
CLCN4-201ENST00000380829 MAGI3Q5TCQ9 1506 aa21.04■□□□□ 0.96
CLCN4-201ENST00000380829 NCOA2Q15596 1464 aa21.03■□□□□ 0.96
CLCN4-201ENST00000380829 FGD6Q6ZV73 1430 aa21.03■□□□□ 0.96
CLCN4-201ENST00000380829 EHBP1L1Q8N3D4 1523 aa21.03■□□□□ 0.96
CLCN4-201ENST00000380829 EPRSP07814 1512 aaKnown RBP21.03■□□□□ 0.96
CLCN4-201ENST00000380829 RAB3GAP2Q9H2M9 1393 aa21.02■□□□□ 0.96
CLCN4-201ENST00000380829 CDK13Q14004 1512 aaKnown RBP21.02■□□□□ 0.95
CLCN4-201ENST00000380829 SUPT6HQ7KZ85 1726 aaKnown RBP21■□□□□ 0.95
CLCN4-201ENST00000380829 NUP160Q12769 1436 aa20.99■□□□□ 0.95
CLCN4-201ENST00000380829 SETD5Q9C0A6 1442 aa20.98■□□□□ 0.95
CLCN4-201ENST00000380829 CLSPNQ9HAW4 1339 aa20.97■□□□□ 0.95
CLCN4-201ENST00000380829 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLCN4-201ENST00000380829 MYOM3Q5VTT5 1437 aa20.97■□□□□ 0.95
CLCN4-201ENST00000380829 DIEXFQ68CQ4 756 aaKnown RBP20.95■□□□□ 0.94
CLCN4-201ENST00000380829 JPH4Q96JJ6 628 aa20.94■□□□□ 0.94
CLCN4-201ENST00000380829 ARHGEF11O15085 1522 aa20.92■□□□□ 0.94
CLCN4-201ENST00000380829 NUP153P49790 1475 aaKnown RBP20.92■□□□□ 0.94
CLCN4-201ENST00000380829 RAPGEF6Q8TEU7 1601 aa20.91■□□□□ 0.94
CLCN4-201ENST00000380829 CARMIL2Q6F5E8 1435 aa20.88■□□□□ 0.93
CLCN4-201ENST00000380829 PTPRKQ15262 1439 aa20.87■□□□□ 0.93
CLCN4-201ENST00000380829 PLB1Q6P1J6 1458 aa20.87■□□□□ 0.93
CLCN4-201ENST00000380829 PTPN23Q9H3S7 1636 aa20.87■□□□□ 0.93
CLCN4-201ENST00000380829 ZNF316A6NFI3 1004 aaPredicted RBP20.86■□□□□ 0.93
CLCN4-201ENST00000380829 MAPKBP1O60336 1514 aa20.83■□□□□ 0.93
CLCN4-201ENST00000380829 CHD1O14646 1710 aa20.79■□□□□ 0.92
CLCN4-201ENST00000380829 TCOF1Q13428 1488 aaKnown RBP20.78■□□□□ 0.92
CLCN4-201ENST00000380829 CDK11AQ9UQ88 783 aaPredicted RBP20.78■□□□□ 0.92
CLCN4-201ENST00000380829 HFM1A2PYH4 1435 aa20.77■□□□□ 0.92
CLCN4-201ENST00000380829 YTHDC1Q96MU7 727 aaKnown RBP20.76■□□□□ 0.91
CLCN4-201ENST00000380829 PRG4Q92954 1404 aaPredicted RBP20.76■□□□□ 0.91
CLCN4-201ENST00000380829 MIA2Q96PC5 1412 aa20.76■□□□□ 0.91
CLCN4-201ENST00000380829 CHIC2Q9UKJ5 165 aa20.74■□□□□ 0.91
CLCN4-201ENST00000380829 NAIPQ13075 1403 aa20.73■□□□□ 0.91
CLCN4-201ENST00000380829 TROQ12816 1431 aaPredicted RBP20.72■□□□□ 0.91
CLCN4-201ENST00000380829 ABCA8O94911 1581 aa20.71■□□□□ 0.91
CLCN4-201ENST00000380829 RRP7BPQ9NSQ0 103 aa20.7■□□□□ 0.91
CLCN4-201ENST00000380829 SIN3AQ96ST3 1273 aa20.69■□□□□ 0.9
CLCN4-201ENST00000380829 ZNF644Q9H582 1327 aaPredicted RBP20.67■□□□□ 0.9
CLCN4-201ENST00000380829 PTPRGP23470 1445 aa20.67■□□□□ 0.9
CLCN4-201ENST00000380829 KIF14Q15058 1648 aa20.66■□□□□ 0.9
CLCN4-201ENST00000380829 ATP10BO94823 1461 aa20.65■□□□□ 0.9
CLCN4-201ENST00000380829 UACAQ9BZF9 1416 aa20.64■□□□□ 0.9
CLCN4-201ENST00000380829 PLEKHD1A6NEE1 506 aa20.61■□□□□ 0.89
CLCN4-201ENST00000380829 ADCY10Q96PN6 1610 aa20.61■□□□□ 0.89
CLCN4-201ENST00000380829 DAPK1P53355 1430 aa20.61■□□□□ 0.89
CLCN4-201ENST00000380829 SHROOM2Q13796 1616 aa20.61■□□□□ 0.89
CLCN4-201ENST00000380829 CFDP1Q9UEE9 299 aaPredicted RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms