RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 NOP58Q9Y2X3 529 aaKnown RBP13.09□□□□□ -0.31
PTPRA-204ENST00000380393 CFTRP13569 1480 aa13.07□□□□□ -0.32
PTPRA-204ENST00000380393 PDIA4P13667 645 aaKnown RBP13.06□□□□□ -0.32
PTPRA-204ENST00000380393 FGD1P98174 961 aa13.05□□□□□ -0.32
PTPRA-204ENST00000380393 WRNQ14191 1432 aaPredicted RBP eCLIP13.04□□□□□ -0.32
PTPRA-204ENST00000380393 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
PTPRA-204ENST00000380393 RSPH6AQ9H0K4 717 aa13.02□□□□□ -0.33
PTPRA-204ENST00000380393 PAK3O75914 559 aaPredicted RBP13.01□□□□□ -0.33
PTPRA-204ENST00000380393 RBM10P98175 930 aaKnown RBP13.01□□□□□ -0.33
PTPRA-204ENST00000380393 AEBP2Q6ZN18 517 aaPredicted RBP12.99□□□□□ -0.33
PTPRA-204ENST00000380393 SYNJ1O43426 1573 aa12.99□□□□□ -0.33
PTPRA-204ENST00000380393 AAMPQ13685 434 aa12.99□□□□□ -0.33
PTPRA-204ENST00000380393 SOGA1O94964 1423 aa12.99□□□□□ -0.33
PTPRA-204ENST00000380393 RUSC2Q8N2Y8 1516 aa12.98□□□□□ -0.33
PTPRA-204ENST00000380393 BCL11BQ9C0K0 894 aaPredicted RBP12.98□□□□□ -0.33
PTPRA-204ENST00000380393 FANCD2Q9BXW9 1451 aa12.97□□□□□ -0.33
PTPRA-204ENST00000380393 C11orf95C9JLR9 678 aaPredicted RBP12.95□□□□□ -0.34
PTPRA-204ENST00000380393 BRPF3Q9ULD4 1205 aa12.94□□□□□ -0.34
PTPRA-204ENST00000380393 CUX1P39880 1505 aa12.93□□□□□ -0.34
PTPRA-204ENST00000380393 KCNH8Q96L42 1107 aa12.92□□□□□ -0.34
PTPRA-204ENST00000380393 UBTFP17480 764 aaKnown RBP12.9□□□□□ -0.34
PTPRA-204ENST00000380393 KLHL34Q8N239 644 aa12.87□□□□□ -0.35
PTPRA-204ENST00000380393 RANGAP1P46060 587 aaPredicted RBP12.86□□□□□ -0.35
PTPRA-204ENST00000380393 PDS5BQ9NTI5 1447 aa12.86□□□□□ -0.35
PTPRA-204ENST00000380393 LAMC3Q9Y6N6 1575 aa12.86□□□□□ -0.35
PTPRA-204ENST00000380393 CEP164Q9UPV0 1460 aa12.85□□□□□ -0.35
PTPRA-204ENST00000380393 NEFMP07197 916 aa12.85□□□□□ -0.35
PTPRA-204ENST00000380393 WASHC2AQ641Q2 1341 aa12.85□□□□□ -0.35
PTPRA-204ENST00000380393 KIF21AQ7Z4S6 1674 aa12.84□□□□□ -0.35
PTPRA-204ENST00000380393 RAD54L2Q9Y4B4 1467 aa12.84□□□□□ -0.35
PTPRA-204ENST00000380393 WASHC2CQ9Y4E1 1318 aa12.83□□□□□ -0.35
PTPRA-204ENST00000380393 URB2Q14146 1524 aaKnown RBP12.83□□□□□ -0.36
PTPRA-204ENST00000380393 ZBTB47Q9UFB7 747 aaPredicted RBP12.83□□□□□ -0.36
PTPRA-204ENST00000380393 TOP2BQ02880 1626 aa12.82□□□□□ -0.36
PTPRA-204ENST00000380393 ERCC6Q03468 1493 aa12.82□□□□□ -0.36
PTPRA-204ENST00000380393 FGD5Q6ZNL6 1462 aa12.82□□□□□ -0.36
PTPRA-204ENST00000380393 HSP90AA2PQ14568 343 aaPredicted RBP12.8□□□□□ -0.36
PTPRA-204ENST00000380393 ANP32AP39687 249 aaKnown RBP12.8□□□□□ -0.36
PTPRA-204ENST00000380393 TOPBP1Q92547 1522 aa12.79□□□□□ -0.36
PTPRA-204ENST00000380393 IRX6P78412 446 aaPredicted RBP12.79□□□□□ -0.36
PTPRA-204ENST00000380393 PRDM2Q13029 1718 aa12.78□□□□□ -0.36
PTPRA-204ENST00000380393 IPO9Q96P70 1041 aaKnown RBP12.78□□□□□ -0.36
PTPRA-204ENST00000380393 TRIM52Q96A61 297 aa12.77□□□□□ -0.36
PTPRA-204ENST00000380393 TDRD9Q8NDG6 1382 aaKnown RBP12.77□□□□□ -0.37
PTPRA-204ENST00000380393 TAF7LQ5H9L4 462 aa12.76□□□□□ -0.37
PTPRA-204ENST00000380393 CUX2O14529 1486 aa12.75□□□□□ -0.37
PTPRA-204ENST00000380393 POLA1P09884 1462 aaPredicted RBP12.75□□□□□ -0.37
PTPRA-204ENST00000380393 BIVM-ERCC5R4GMW8 1640 aa12.75□□□□□ -0.37
PTPRA-204ENST00000380393 FAM43AQ8N2R8 423 aa12.74□□□□□ -0.37
PTPRA-204ENST00000380393 USP35Q9P2H5 1018 aa12.74□□□□□ -0.37
PTPRA-204ENST00000380393 RRP9O43818 475 aaKnown RBP12.73□□□□□ -0.37
PTPRA-204ENST00000380393 DNMBPQ6XZF7 1577 aa12.72□□□□□ -0.37
PTPRA-204ENST00000380393 LAS1LQ9Y4W2 734 aaKnown RBP12.71□□□□□ -0.37
PTPRA-204ENST00000380393 CEP162Q5TB80 1403 aa12.71□□□□□ -0.37
PTPRA-204ENST00000380393 MRC2Q9UBG0 1479 aa12.69□□□□□ -0.38
PTPRA-204ENST00000380393 GSE1Q14687 1217 aa12.68□□□□□ -0.38
PTPRA-204ENST00000380393 HSP90AA1P07900 732 aaKnown RBP12.68□□□□□ -0.38
PTPRA-204ENST00000380393 KIF27Q86VH2 1401 aa12.68□□□□□ -0.38
PTPRA-204ENST00000380393 PPP4R2Q9NY27 417 aa12.67□□□□□ -0.38
PTPRA-204ENST00000380393 AQRO60306 1485 aaKnown RBP eCLIP12.67□□□□□ -0.385e-7■■■■□ 21.6
PTPRA-204ENST00000380393 RAPGEF2Q9Y4G8 1499 aa12.67□□□□□ -0.38
PTPRA-204ENST00000380393 NCBP3Q53F19 620 aaKnown RBP12.66□□□□□ -0.38
PTPRA-204ENST00000380393 IGF1RP08069 1367 aa12.66□□□□□ -0.38
PTPRA-204ENST00000380393 PAXIP1Q6ZW49 1069 aaPredicted RBP12.65□□□□□ -0.38
PTPRA-204ENST00000380393 ZNF608Q9ULD9 1512 aaPredicted RBP12.64□□□□□ -0.39
PTPRA-204ENST00000380393 NAP1L5Q96NT1 182 aaPredicted RBP12.64□□□□□ -0.39
PTPRA-204ENST00000380393 B4GALNT3Q6L9W6 998 aa12.62□□□□□ -0.39
PTPRA-204ENST00000380393 EEA1Q15075 1411 aa12.61□□□□□ -0.39
PTPRA-204ENST00000380393 PPM1GO15355 546 aaPredicted RBP12.61□□□□□ -0.39
PTPRA-204ENST00000380393 NAP1L2Q9ULW6 460 aaPredicted RBP12.61□□□□□ -0.39
PTPRA-204ENST00000380393 RGS3P49796 1198 aa12.59□□□□□ -0.39
PTPRA-204ENST00000380393 FBLN2P98095 1184 aa12.59□□□□□ -0.39
PTPRA-204ENST00000380393 BBXQ8WY36 941 aaPredicted RBP12.59□□□□□ -0.39
PTPRA-204ENST00000380393 ABCA10Q8WWZ4 1543 aa12.59□□□□□ -0.39
PTPRA-204ENST00000380393 FRAT1Q92837 279 aaPredicted RBP12.59□□□□□ -0.39
PTPRA-204ENST00000380393 CARMIL1Q5VZK9 1371 aa12.59□□□□□ -0.39
PTPRA-204ENST00000380393 THOC2Q8NI27 1593 aaKnown RBP12.58□□□□□ -0.4
PTPRA-204ENST00000380393 WDR62O43379 1518 aa12.57□□□□□ -0.4
PTPRA-204ENST00000380393 CHMP4BQ9H444 224 aaKnown RBP12.57□□□□□ -0.4
PTPRA-204ENST00000380393 P3H3Q8IVL6 736 aa12.56□□□□□ -0.4
PTPRA-204ENST00000380393 GOLGA3Q08378 1498 aa12.56□□□□□ -0.4
PTPRA-204ENST00000380393 GAPVD1Q14C86 1478 aa12.56□□□□□ -0.4
PTPRA-204ENST00000380393 PRDM4Q9UKN5 801 aa12.55□□□□□ -0.4
PTPRA-204ENST00000380393 TARBP1Q13395 1621 aaKnown RBP12.55□□□□□ -0.4
PTPRA-204ENST00000380393 PRXQ9BXM0 1461 aa12.55□□□□□ -0.4
PTPRA-204ENST00000380393 NPM2Q86SE8 214 aaKnown RBP12.55□□□□□ -0.4
PTPRA-204ENST00000380393 ARXQ96QS3 562 aa12.55□□□□□ -0.4
PTPRA-204ENST00000380393 DDX10Q13206 875 aaKnown RBP12.54□□□□□ -0.4
PTPRA-204ENST00000380393 TNIKQ9UKE5 1360 aa12.53□□□□□ -0.4
PTPRA-204ENST00000380393 CALD1Q05682 793 aaKnown RBP12.53□□□□□ -0.4
PTPRA-204ENST00000380393 RRAGDQ9NQL2 400 aaPredicted RBP12.53□□□□□ -0.4
PTPRA-204ENST00000380393 DCAF11Q8TEB1 546 aa12.52□□□□□ -0.41
PTPRA-204ENST00000380393 PNNQ9H307 717 aaKnown RBP12.51□□□□□ -0.41
PTPRA-204ENST00000380393 HIRIP3Q9BW71 556 aaPredicted RBP12.5□□□□□ -0.41
PTPRA-204ENST00000380393 IFT140Q96RY7 1462 aa12.5□□□□□ -0.41
PTPRA-204ENST00000380393 ZNF326Q5BKZ1 582 aaKnown RBP12.49□□□□□ -0.41
PTPRA-204ENST00000380393 KIF21BO75037 1637 aa12.48□□□□□ -0.41
PTPRA-204ENST00000380393 CANXP27824 592 aaKnown RBP12.48□□□□□ -0.41
PTPRA-204ENST00000380393 GTF2E1P29083 439 aaPredicted RBP12.48□□□□□ -0.41
PTPRA-204ENST00000380393 WDR97A6NE52 1622 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms