RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 ARHGEF11O15085 1522 aa19.27■□□□□ 0.67
DEPDC4-202ENST00000378244 KIAA0586Q9BVV6 1533 aa19.27■□□□□ 0.67
DEPDC4-202ENST00000378244 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
DEPDC4-202ENST00000378244 UBTFP17480 764 aaKnown RBP19.24■□□□□ 0.67
DEPDC4-202ENST00000378244 CYB5RLQ6IPT4 315 aa19.23■□□□□ 0.67
DEPDC4-202ENST00000378244 PRG4Q92954 1404 aaPredicted RBP19.22■□□□□ 0.67
DEPDC4-202ENST00000378244 RIMBP3CA6NJZ7 1639 aa19.22■□□□□ 0.67
DEPDC4-202ENST00000378244 RIMBP3BA6NNM3 1639 aa19.22■□□□□ 0.67
DEPDC4-202ENST00000378244 RIMBP3Q9UFD9 1639 aa19.22■□□□□ 0.67
DEPDC4-202ENST00000378244 TTBK1Q5TCY1 1321 aaPredicted RBP19.21■□□□□ 0.67
DEPDC4-202ENST00000378244 ERCC6L2Q5T890 1561 aa19.2■□□□□ 0.66
DEPDC4-202ENST00000378244 IQGAP2Q13576 1575 aa19.18■□□□□ 0.66
DEPDC4-202ENST00000378244 KIF21BO75037 1637 aa19.18■□□□□ 0.66
DEPDC4-202ENST00000378244 SHROOM2Q13796 1616 aa19.15■□□□□ 0.66
DEPDC4-202ENST00000378244 GOLGA3Q08378 1498 aa19.15■□□□□ 0.66
DEPDC4-202ENST00000378244 ARAP1Q96P48 1450 aa19.13■□□□□ 0.65
DEPDC4-202ENST00000378244 P3H3Q8IVL6 736 aa19.12■□□□□ 0.65
DEPDC4-202ENST00000378244 CTTNBP2Q8WZ74 1663 aa19.11■□□□□ 0.65
DEPDC4-202ENST00000378244 LOC105371045A0A1W2PR82 267 aa19.11■□□□□ 0.65
DEPDC4-202ENST00000378244 CARMIL2Q6F5E8 1435 aa19.08■□□□□ 0.65
DEPDC4-202ENST00000378244 DISP1Q96F81 1524 aa19.05■□□□□ 0.64
DEPDC4-202ENST00000378244 UGGT2Q9NYU1 1516 aa19.05■□□□□ 0.64
DEPDC4-202ENST00000378244 PTPRGP23470 1445 aa19.02■□□□□ 0.64
DEPDC4-202ENST00000378244 TNIKQ9UKE5 1360 aa19■□□□□ 0.63
DEPDC4-202ENST00000378244 KIAA0556O60303 1618 aa18.98■□□□□ 0.63
DEPDC4-202ENST00000378244 FHOD3Q2V2M9 1422 aa18.93■□□□□ 0.62
DEPDC4-202ENST00000378244 SAMD9Q5K651 1589 aa18.9■□□□□ 0.62
DEPDC4-202ENST00000378244 ARID3CA6NKF2 412 aa18.89■□□□□ 0.61
DEPDC4-202ENST00000378244 PLB1Q6P1J6 1458 aa18.88■□□□□ 0.61
DEPDC4-202ENST00000378244 ARHGAP35Q9NRY4 1499 aa18.88■□□□□ 0.61
DEPDC4-202ENST00000378244 NPM1P06748 294 aaKnown RBP eCLIP18.86■□□□□ 0.61
DEPDC4-202ENST00000378244 CLIP1P30622 1438 aa18.86■□□□□ 0.61
DEPDC4-202ENST00000378244 UACAQ9BZF9 1416 aa18.86■□□□□ 0.61
DEPDC4-202ENST00000378244 EFCAB5A4FU69 1503 aa18.85■□□□□ 0.61
DEPDC4-202ENST00000378244 ATP1B4Q9UN42 357 aaPredicted RBP18.84■□□□□ 0.61
DEPDC4-202ENST00000378244 ADCY10Q96PN6 1610 aa18.83■□□□□ 0.6
DEPDC4-202ENST00000378244 CEP162Q5TB80 1403 aa18.83■□□□□ 0.6
DEPDC4-202ENST00000378244 TRHP20396 242 aaPredicted RBP18.79■□□□□ 0.6
DEPDC4-202ENST00000378244 ABCC2Q92887 1545 aa18.78■□□□□ 0.6
DEPDC4-202ENST00000378244 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.78■□□□□ 0.6
DEPDC4-202ENST00000378244 HNRNPUL2Q1KMD3 747 aaKnown RBP18.78■□□□□ 0.6
DEPDC4-202ENST00000378244 ABCA8O94911 1581 aa18.75■□□□□ 0.59
DEPDC4-202ENST00000378244 UHRF1BP1LA0JNW5 1464 aa18.75■□□□□ 0.59
DEPDC4-202ENST00000378244 FMN1Q68DA7 1419 aa18.74■□□□□ 0.59
DEPDC4-202ENST00000378244 RAPGEF6Q8TEU7 1601 aa18.71■□□□□ 0.59
DEPDC4-202ENST00000378244 KDM5BQ9UGL1 1544 aa18.7■□□□□ 0.58
DEPDC4-202ENST00000378244 NUP153P49790 1475 aaKnown RBP18.69■□□□□ 0.58
DEPDC4-202ENST00000378244 ATP10BO94823 1461 aa18.67■□□□□ 0.58
DEPDC4-202ENST00000378244 ASXL2Q76L83 1435 aa18.66■□□□□ 0.58
DEPDC4-202ENST00000378244 KCNH8Q96L42 1107 aa18.66■□□□□ 0.58
DEPDC4-202ENST00000378244 ZCCHC11Q5TAX3 1644 aaKnown RBP18.66■□□□□ 0.58
DEPDC4-202ENST00000378244 FAM69CQ0P6D2 419 aa18.65■□□□□ 0.58
DEPDC4-202ENST00000378244 MAPKBP1O60336 1514 aa18.63■□□□□ 0.57
DEPDC4-202ENST00000378244 CDK13Q14004 1512 aaKnown RBP18.62■□□□□ 0.57
DEPDC4-202ENST00000378244 PCF11O94913 1555 aaKnown RBP18.61■□□□□ 0.57
DEPDC4-202ENST00000378244 CASKIN1Q8WXD9 1431 aa18.61■□□□□ 0.57
DEPDC4-202ENST00000378244 PLEKHD1A6NEE1 506 aa18.59■□□□□ 0.57
DEPDC4-202ENST00000378244 EPRSP07814 1512 aaKnown RBP18.59■□□□□ 0.57
DEPDC4-202ENST00000378244 HECW1Q76N89 1606 aa18.58■□□□□ 0.57
DEPDC4-202ENST00000378244 WDR7Q9Y4E6 1490 aa18.57■□□□□ 0.56
DEPDC4-202ENST00000378244 ABCC10Q5T3U5 1492 aa18.57■□□□□ 0.56
DEPDC4-202ENST00000378244 FYCO1Q9BQS8 1478 aa18.55■□□□□ 0.56
DEPDC4-202ENST00000378244 VPS8Q8N3P4 1428 aa18.55■□□□□ 0.56
DEPDC4-202ENST00000378244 CDK11AQ9UQ88 783 aaPredicted RBP18.53■□□□□ 0.56
DEPDC4-202ENST00000378244 DIP2BQ9P265 1576 aa18.52■□□□□ 0.56
DEPDC4-202ENST00000378244 LRRIQ1Q96JM4 1722 aa18.51■□□□□ 0.55
DEPDC4-202ENST00000378244 KIF13AQ9H1H9 1805 aa18.49■□□□□ 0.55
DEPDC4-202ENST00000378244 CCDC18Q5T9S5 1454 aa18.48■□□□□ 0.55
DEPDC4-202ENST00000378244 APLP2Q06481 763 aa18.44■□□□□ 0.54
DEPDC4-202ENST00000378244 MTUS2Q5JR59 1369 aa18.43■□□□□ 0.54
DEPDC4-202ENST00000378244 TSPOAP1O95153 1857 aa18.43■□□□□ 0.54
DEPDC4-202ENST00000378244 TROQ12816 1431 aaPredicted RBP18.42■□□□□ 0.54
DEPDC4-202ENST00000378244 CD109Q6YHK3 1445 aa18.42■□□□□ 0.54
DEPDC4-202ENST00000378244 MAGI3Q5TCQ9 1506 aa18.42■□□□□ 0.54
DEPDC4-202ENST00000378244 GLI2P10070 1586 aa18.4■□□□□ 0.54
DEPDC4-202ENST00000378244 KANK4Q5T7N3 995 aaPredicted RBP18.4■□□□□ 0.54
DEPDC4-202ENST00000378244 KIF14Q15058 1648 aa18.37■□□□□ 0.53
DEPDC4-202ENST00000378244 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.37■□□□□ 0.53
DEPDC4-202ENST00000378244 TIAM1Q13009 1591 aa18.36■□□□□ 0.53
DEPDC4-202ENST00000378244 MAP3K4Q9Y6R4 1608 aa18.36■□□□□ 0.53
DEPDC4-202ENST00000378244 PPARGC1BQ86YN6 1023 aaKnown RBP18.35■□□□□ 0.53
DEPDC4-202ENST00000378244 TTC37Q6PGP7 1564 aa18.34■□□□□ 0.53
DEPDC4-202ENST00000378244 ABCA9Q8IUA7 1624 aa18.34■□□□□ 0.53
DEPDC4-202ENST00000378244 CFAP43Q8NDM7 1665 aa18.32■□□□□ 0.52
DEPDC4-202ENST00000378244 LRRC9Q6ZRR7 1453 aa18.31■□□□□ 0.52
DEPDC4-202ENST00000378244 PPRC1Q5VV67 1664 aaKnown RBP18.29■□□□□ 0.52
DEPDC4-202ENST00000378244 EHBP1L1Q8N3D4 1523 aa18.28■□□□□ 0.52
DEPDC4-202ENST00000378244 TEX14Q8IWB6 1497 aa18.28■□□□□ 0.52
DEPDC4-202ENST00000378244 ZNF777Q9ULD5 760 aaPredicted RBP18.28■□□□□ 0.52
DEPDC4-202ENST00000378244 PLCH2O75038 1416 aa18.27■□□□□ 0.51
DEPDC4-202ENST00000378244 CCNB3Q8WWL7 1395 aa18.26■□□□□ 0.51
DEPDC4-202ENST00000378244 FANCAO15360 1455 aa18.26■□□□□ 0.51
DEPDC4-202ENST00000378244 MAP3K1Q13233 1512 aa18.26■□□□□ 0.51
DEPDC4-202ENST00000378244 EFCAB2Q5VUJ9 269 aa18.25■□□□□ 0.51
DEPDC4-202ENST00000378244 NCOA2Q15596 1464 aa18.25■□□□□ 0.51
DEPDC4-202ENST00000378244 CFDP1Q9UEE9 299 aaPredicted RBP18.24■□□□□ 0.51
DEPDC4-202ENST00000378244 COL17A1Q9UMD9 1497 aaPredicted RBP18.24■□□□□ 0.51
DEPDC4-202ENST00000378244 ARHGAP5Q13017 1502 aa18.23■□□□□ 0.51
DEPDC4-202ENST00000378244 RAPGEF3O95398 923 aa18.22■□□□□ 0.51
DEPDC4-202ENST00000378244 GPATCH8Q9UKJ3 1502 aaKnown RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms