RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 SMARCA4P51532 1647 aa8.93□□□□□ -0.98
SMC1A-202ENST00000375340 MRS2Q9HD23 443 aa8.93□□□□□ -0.98
SMC1A-202ENST00000375340 ANP32EQ9BTT0 268 aa8.92□□□□□ -0.98
SMC1A-202ENST00000375340 KANK4Q5T7N3 995 aaPredicted RBP8.92□□□□□ -0.98
SMC1A-202ENST00000375340 VPS8Q8N3P4 1428 aa8.91□□□□□ -0.98
SMC1A-202ENST00000375340 KIF27Q86VH2 1401 aa8.91□□□□□ -0.98
SMC1A-202ENST00000375340 CCDC136Q96JN2 1154 aa8.89□□□□□ -0.99
SMC1A-202ENST00000375340 KDM2AQ9Y2K7 1162 aa8.89□□□□□ -0.99
SMC1A-202ENST00000375340 CCNB3Q8WWL7 1395 aa8.89□□□□□ -0.99
SMC1A-202ENST00000375340 RAPGEF2Q9Y4G8 1499 aa8.87□□□□□ -0.99
SMC1A-202ENST00000375340 EIF4G1Q04637 1599 aaKnown RBP8.87□□□□□ -0.99
SMC1A-202ENST00000375340 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.85□□□□□ -0.994e-7■■■■□ 21
SMC1A-202ENST00000375340 SMARCA2P51531 1590 aa8.85□□□□□ -0.99
SMC1A-202ENST00000375340 KCNH8Q96L42 1107 aa8.85□□□□□ -0.99
SMC1A-202ENST00000375340 TMC1Q8TDI8 760 aa8.84□□□□□ -0.99
SMC1A-202ENST00000375340 CUX2O14529 1486 aa8.84□□□□□ -0.99
SMC1A-202ENST00000375340 EIF4G2P78344 907 aaKnown RBP eCLIP8.84□□□□□ -0.99
SMC1A-202ENST00000375340 RAB3GAP2Q9H2M9 1393 aa8.83□□□□□ -1
SMC1A-202ENST00000375340 SETD5Q9C0A6 1442 aa8.83□□□□□ -1
SMC1A-202ENST00000375340 ZBTB47Q9UFB7 747 aaPredicted RBP8.83□□□□□ -1
SMC1A-202ENST00000375340 ARXQ96QS3 562 aa8.82□□□□□ -1
SMC1A-202ENST00000375340 ARHGAP35Q9NRY4 1499 aa8.81□□□□□ -1
SMC1A-202ENST00000375340 TSHZ2Q9NRE2 1034 aa8.8□□□□□ -1
SMC1A-202ENST00000375340 B4GALNT3Q6L9W6 998 aa8.79□□□□□ -1
SMC1A-202ENST00000375340 SENP3Q9H4L4 574 aaPredicted RBP8.79□□□□□ -1
SMC1A-202ENST00000375340 FOXD1Q16676 465 aa8.79□□□□□ -1
SMC1A-202ENST00000375340 EIF5BO60841 1220 aaKnown RBP8.78□□□□□ -1
SMC1A-202ENST00000375340 RBM19Q9Y4C8 960 aaKnown RBP8.78□□□□□ -1
SMC1A-202ENST00000375340 DHX57Q6P158 1386 aaKnown RBP8.77□□□□□ -1
SMC1A-202ENST00000375340 CARMIL1Q5VZK9 1371 aa8.77□□□□□ -1.01
SMC1A-202ENST00000375340 LAS1LQ9Y4W2 734 aaKnown RBP8.76□□□□□ -1.01
SMC1A-202ENST00000375340 HSPA5P11021 654 aaKnown RBP8.75□□□□□ -1.01
SMC1A-202ENST00000375340 CHGAP10645 457 aaKnown RBP8.75□□□□□ -1.01
SMC1A-202ENST00000375340 WDR43Q15061 677 aaKnown RBP eCLIP8.74□□□□□ -1.013e-7■■□□□ 12
SMC1A-202ENST00000375340 SYNJ1O43426 1573 aa8.74□□□□□ -1.01
SMC1A-202ENST00000375340 FHAD1B1AJZ9 1412 aa8.74□□□□□ -1.01
SMC1A-202ENST00000375340 RTN4Q9NQC3 1192 aaKnown RBP8.74□□□□□ -1.01
SMC1A-202ENST00000375340 PPP4R2Q9NY27 417 aa8.74□□□□□ -1.01
SMC1A-202ENST00000375340 KIF21BO75037 1637 aa8.74□□□□□ -1.01
SMC1A-202ENST00000375340 SLC24A1O60721 1099 aa8.73□□□□□ -1.01
SMC1A-202ENST00000375340 FHOD3Q2V2M9 1422 aa8.73□□□□□ -1.01
SMC1A-202ENST00000375340 NOP58Q9Y2X3 529 aaKnown RBP8.73□□□□□ -1.01
SMC1A-202ENST00000375340 RGL3Q3MIN7 710 aa8.73□□□□□ -1.01
SMC1A-202ENST00000375340 CC2D1BQ5T0F9 858 aaKnown RBP8.71□□□□□ -1.01
SMC1A-202ENST00000375340 CARD11Q9BXL7 1154 aa8.7□□□□□ -1.02
SMC1A-202ENST00000375340 CCER2I3L3R5 266 aa8.7□□□□□ -1.02
SMC1A-202ENST00000375340 CHMP7Q8WUX9 453 aaPredicted RBP8.69□□□□□ -1.02
SMC1A-202ENST00000375340 DEKP35659 375 aaKnown RBP8.68□□□□□ -1.02
SMC1A-202ENST00000375340 ATAD2BQ9ULI0 1458 aa8.67□□□□□ -1.02
SMC1A-202ENST00000375340 CFDP1Q9UEE9 299 aaPredicted RBP8.67□□□□□ -1.02
SMC1A-202ENST00000375340 TSPY4P0CV99 314 aa8.67□□□□□ -1.02
SMC1A-202ENST00000375340 TSPY10P0CW01 314 aa8.67□□□□□ -1.02
SMC1A-202ENST00000375340 HSP90AA1P07900 732 aaKnown RBP8.66□□□□□ -1.02
SMC1A-202ENST00000375340 UPF2Q9HAU5 1272 aaKnown RBP8.66□□□□□ -1.02
SMC1A-202ENST00000375340 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.66□□□□□ -1.02
SMC1A-202ENST00000375340 NEFMP07197 916 aa8.66□□□□□ -1.02
SMC1A-202ENST00000375340 DDRGK1Q96HY6 314 aa8.65□□□□□ -1.02
SMC1A-202ENST00000375340 ARAP1Q96P48 1450 aa8.64□□□□□ -1.03
SMC1A-202ENST00000375340 RGS3P49796 1198 aa8.63□□□□□ -1.03
SMC1A-202ENST00000375340 CCDC18Q5T9S5 1454 aa8.63□□□□□ -1.03
SMC1A-202ENST00000375340 PPP1R15AO75807 674 aaPredicted RBP8.63□□□□□ -1.03
SMC1A-202ENST00000375340 PRDM2Q13029 1718 aa8.62□□□□□ -1.03
SMC1A-202ENST00000375340 UNC13AQ9UPW8 1703 aa8.62□□□□□ -1.03
SMC1A-202ENST00000375340 DCAF11Q8TEB1 546 aa8.62□□□□□ -1.03
SMC1A-202ENST00000375340 PLPPR3Q6T4P5 718 aa8.62□□□□□ -1.03
SMC1A-202ENST00000375340 MPHOSPH9Q99550 1183 aa8.61□□□□□ -1.03
SMC1A-202ENST00000375340 TNNT2P45379 298 aaPredicted RBP8.61□□□□□ -1.03
SMC1A-202ENST00000375340 NEUROD2Q15784 382 aa8.6□□□□□ -1.03
SMC1A-202ENST00000375340 PLEKHD1A6NEE1 506 aa8.6□□□□□ -1.03
SMC1A-202ENST00000375340 KNSTRNQ9Y448 316 aa8.6□□□□□ -1.03
SMC1A-202ENST00000375340 FMN1Q68DA7 1419 aa8.6□□□□□ -1.03
SMC1A-202ENST00000375340 TDRD9Q8NDG6 1382 aaKnown RBP8.59□□□□□ -1.03
SMC1A-202ENST00000375340 STAG3Q9UJ98 1225 aa8.58□□□□□ -1.04
SMC1A-202ENST00000375340 PKD2Q13563 968 aa8.58□□□□□ -1.04
SMC1A-202ENST00000375340 TOP2BQ02880 1626 aa8.58□□□□□ -1.04
SMC1A-202ENST00000375340 ERCC6Q03468 1493 aa8.58□□□□□ -1.04
SMC1A-202ENST00000375340 WDR97A6NE52 1622 aa8.58□□□□□ -1.04
SMC1A-202ENST00000375340 ROCK2O75116 1388 aaKnown RBP8.58□□□□□ -1.04
SMC1A-202ENST00000375340 PHLDB1Q86UU1 1377 aa8.58□□□□□ -1.04
SMC1A-202ENST00000375340 TIMELESSQ9UNS1 1208 aa8.57□□□□□ -1.04
SMC1A-202ENST00000375340 SPRYD3Q8NCJ5 442 aa8.57□□□□□ -1.04
SMC1A-202ENST00000375340 FGD5Q6ZNL6 1462 aa8.57□□□□□ -1.04
SMC1A-202ENST00000375340 FRAT1Q92837 279 aaPredicted RBP8.57□□□□□ -1.04
SMC1A-202ENST00000375340 L3MBTL2Q969R5 705 aa8.57□□□□□ -1.04
SMC1A-202ENST00000375340 ANP32BQ92688 251 aaKnown RBP8.57□□□□□ -1.04
SMC1A-202ENST00000375340 LRRC9Q6ZRR7 1453 aa8.56□□□□□ -1.04
SMC1A-202ENST00000375340 BECN1Q14457 450 aa8.56□□□□□ -1.04
SMC1A-202ENST00000375340 RAD54L2Q9Y4B4 1467 aa8.56□□□□□ -1.04
SMC1A-202ENST00000375340 ERICH3Q5RHP9 1530 aa8.55□□□□□ -1.04
SMC1A-202ENST00000375340 KTN1Q86UP2 1357 aaKnown RBP8.55□□□□□ -1.04
SMC1A-202ENST00000375340 TPRNQ4KMQ1 711 aa8.54□□□□□ -1.04
SMC1A-202ENST00000375340 FANCD2Q9BXW9 1451 aa8.53□□□□□ -1.04
SMC1A-202ENST00000375340 PPM1GO15355 546 aaPredicted RBP8.53□□□□□ -1.04
SMC1A-202ENST00000375340 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.53□□□□□ -1.04
SMC1A-202ENST00000375340 FTSJ3Q8IY81 847 aaKnown RBP8.53□□□□□ -1.04
SMC1A-202ENST00000375340 RCAN3Q9UKA8 241 aa8.53□□□□□ -1.04
SMC1A-202ENST00000375340 CUX1P39880 1505 aa8.53□□□□□ -1.04
SMC1A-202ENST00000375340 RRBP1Q9P2E9 1410 aaKnown RBP8.53□□□□□ -1.04
SMC1A-202ENST00000375340 NUDCQ9Y266 331 aa8.53□□□□□ -1.04
SMC1A-202ENST00000375340 TIAM1Q13009 1591 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms