RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 HSP90AA2PQ14568 343 aaPredicted RBP13.69□□□□□ -0.22
CD28-202ENST00000374481 MRS2Q9HD23 443 aa13.69□□□□□ -0.22
CD28-202ENST00000374481 PABPN1Q86U42 306 aaKnown RBP eCLIP13.67□□□□□ -0.22
CD28-202ENST00000374481 PNNQ9H307 717 aaKnown RBP13.66□□□□□ -0.22
CD28-202ENST00000374481 SLC24A1O60721 1099 aa13.65□□□□□ -0.22
CD28-202ENST00000374481 USP35Q9P2H5 1018 aa13.65□□□□□ -0.22
CD28-202ENST00000374481 ARID4BQ4LE39 1312 aaPredicted RBP13.64□□□□□ -0.23
CD28-202ENST00000374481 CCER2I3L3R5 266 aa13.62□□□□□ -0.23
CD28-202ENST00000374481 UPF2Q9HAU5 1272 aaKnown RBP13.62□□□□□ -0.23
CD28-202ENST00000374481 TONSLQ96HA7 1378 aa13.61□□□□□ -0.23
CD28-202ENST00000374481 MSH5O43196 834 aa13.6□□□□□ -0.23
CD28-202ENST00000374481 KCNH8Q96L42 1107 aa13.6□□□□□ -0.23
CD28-202ENST00000374481 A0A0U1RQG5 324 aaPredicted RBP13.59□□□□□ -0.23
CD28-202ENST00000374481 L1TD1Q5T7N2 865 aaKnown RBP13.58□□□□□ -0.23
CD28-202ENST00000374481 NCLP19338 710 aaKnown RBP13.57□□□□□ -0.24
CD28-202ENST00000374481 GSE1Q14687 1217 aa13.57□□□□□ -0.24
CD28-202ENST00000374481 SCRIBQ14160 1630 aa13.57□□□□□ -0.24
CD28-202ENST00000374481 CDK11BP21127 795 aaKnown RBP13.56□□□□□ -0.24
CD28-202ENST00000374481 BECN1Q14457 450 aa13.56□□□□□ -0.24
CD28-202ENST00000374481 RSF1Q96T23 1441 aaPredicted RBP13.52□□□□□ -0.25
CD28-202ENST00000374481 CEP162Q5TB80 1403 aa13.52□□□□□ -0.25
CD28-202ENST00000374481 CANXP27824 592 aaKnown RBP13.51□□□□□ -0.25
CD28-202ENST00000374481 TMC1Q8TDI8 760 aa13.5□□□□□ -0.25
CD28-202ENST00000374481 BRPF3Q9ULD4 1205 aa13.5□□□□□ -0.25
CD28-202ENST00000374481 ZNF326Q5BKZ1 582 aaKnown RBP13.48□□□□□ -0.25
CD28-202ENST00000374481 PAK3O75914 559 aaPredicted RBP13.47□□□□□ -0.25
CD28-202ENST00000374481 AMER1Q5JTC6 1135 aaPredicted RBP13.46□□□□□ -0.25
CD28-202ENST00000374481 AEBP2Q6ZN18 517 aaPredicted RBP13.45□□□□□ -0.26
CD28-202ENST00000374481 TCERG1O14776 1098 aaKnown RBP13.44□□□□□ -0.26
CD28-202ENST00000374481 SENP3-EIF4A1A0A087X0R7 540 aa13.43□□□□□ -0.26
CD28-202ENST00000374481 ARID3AQ99856 593 aa13.41□□□□□ -0.26
CD28-202ENST00000374481 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.4□□□□□ -0.26
CD28-202ENST00000374481 RB1CC1Q8TDY2 1594 aa13.4□□□□□ -0.26
CD28-202ENST00000374481 DNTTIP2Q5QJE6 756 aaKnown RBP13.39□□□□□ -0.27
CD28-202ENST00000374481 EIF4G2P78344 907 aaKnown RBP eCLIP13.38□□□□□ -0.27
CD28-202ENST00000374481 ZMYND15Q9H091 742 aa13.38□□□□□ -0.27
CD28-202ENST00000374481 MSNP26038 577 aaKnown RBP13.38□□□□□ -0.27
CD28-202ENST00000374481 SIN3AQ96ST3 1273 aa13.37□□□□□ -0.27
CD28-202ENST00000374481 GOLGA6L3A6NEY3 463 aa13.36□□□□□ -0.27
CD28-202ENST00000374481 FAM43AQ8N2R8 423 aa13.36□□□□□ -0.27
CD28-202ENST00000374481 RGS3P49796 1198 aa13.36□□□□□ -0.27
CD28-202ENST00000374481 CLIP1P30622 1438 aa13.35□□□□□ -0.27
CD28-202ENST00000374481 TNIKQ9UKE5 1360 aa13.34□□□□□ -0.27
CD28-202ENST00000374481 GZF1Q9H116 711 aaPredicted RBP13.34□□□□□ -0.27
CD28-202ENST00000374481 GOLGA6L22H0YM25 854 aa13.34□□□□□ -0.27
CD28-202ENST00000374481 FRAT1Q92837 279 aaPredicted RBP13.33□□□□□ -0.28
CD28-202ENST00000374481 PTMAP06454 111 aaKnown RBP13.32□□□□□ -0.28
CD28-202ENST00000374481 PDE4AP27815 886 aa13.32□□□□□ -0.28
CD28-202ENST00000374481 MYH16Q9H6N6 1097 aa13.31□□□□□ -0.28
CD28-202ENST00000374481 NFKBIBQ15653 356 aa13.31□□□□□ -0.28
CD28-202ENST00000374481 RRP9O43818 475 aaKnown RBP13.3□□□□□ -0.28
CD28-202ENST00000374481 SLC4A3P48751 1232 aa13.3□□□□□ -0.28
CD28-202ENST00000374481 SLKQ9H2G2 1235 aaPredicted RBP13.3□□□□□ -0.28
CD28-202ENST00000374481 EEA1Q15075 1411 aa13.29□□□□□ -0.28
CD28-202ENST00000374481 PLEKHG5O94827 1062 aa13.23□□□□□ -0.29
CD28-202ENST00000374481 NUDCQ9Y266 331 aa13.23□□□□□ -0.29
CD28-202ENST00000374481 SPRYD3Q8NCJ5 442 aa13.21□□□□□ -0.29
CD28-202ENST00000374481 FAM13BQ9NYF5 915 aa13.21□□□□□ -0.29
CD28-202ENST00000374481 GOLGA3Q08378 1498 aa13.21□□□□□ -0.29
CD28-202ENST00000374481 SLC4A1APQ9BWU0 796 aaKnown RBP13.21□□□□□ -0.29
CD28-202ENST00000374481 CECR2Q9BXF3 1484 aa13.21□□□□□ -0.29
CD28-202ENST00000374481 PDE4CQ08493 712 aa13.21□□□□□ -0.3
CD28-202ENST00000374481 DHX57Q6P158 1386 aaKnown RBP13.19□□□□□ -0.3
CD28-202ENST00000374481 NACADO15069 1562 aa13.19□□□□□ -0.3
CD28-202ENST00000374481 MS4A1P11836 297 aa13.18□□□□□ -0.3
CD28-202ENST00000374481 ERCC6Q03468 1493 aa13.17□□□□□ -0.3
CD28-202ENST00000374481 RCAN3Q9UKA8 241 aa13.17□□□□□ -0.3
CD28-202ENST00000374481 WRNQ14191 1432 aaPredicted RBP eCLIP13.16□□□□□ -0.3
CD28-202ENST00000374481 MROH2BQ7Z745 1585 aa13.15□□□□□ -0.3
CD28-202ENST00000374481 MAP7D2Q96T17 732 aa13.15□□□□□ -0.3
CD28-202ENST00000374481 TPM2P07951 284 aa13.14□□□□□ -0.31
CD28-202ENST00000374481 ZBED9Q6R2W3 1325 aa13.14□□□□□ -0.31
CD28-202ENST00000374481 WDR43Q15061 677 aaKnown RBP eCLIP13.14□□□□□ -0.31
CD28-202ENST00000374481 FRAT2O75474 233 aaPredicted RBP13.14□□□□□ -0.31
CD28-202ENST00000374481 CHAF1AQ13111 956 aaPredicted RBP13.13□□□□□ -0.31
CD28-202ENST00000374481 TNNT3P45378 269 aaPredicted RBP13.13□□□□□ -0.31
CD28-202ENST00000374481 P3H3Q8IVL6 736 aa13.13□□□□□ -0.31
CD28-202ENST00000374481 ZBTB7CA1YPR0 619 aa13.13□□□□□ -0.31
CD28-202ENST00000374481 PPP1R15AO75807 674 aaPredicted RBP13.13□□□□□ -0.31
CD28-202ENST00000374481 HSCBQ8IWL3 235 aa13.12□□□□□ -0.31
CD28-202ENST00000374481 C11orf95C9JLR9 678 aaPredicted RBP13.12□□□□□ -0.31
CD28-202ENST00000374481 BAZ1BQ9UIG0 1483 aaKnown RBP13.12□□□□□ -0.31
CD28-202ENST00000374481 HSP90AB1P08238 724 aaKnown RBP13.11□□□□□ -0.31
CD28-202ENST00000374481 CCNB3Q8WWL7 1395 aa13.11□□□□□ -0.31
CD28-202ENST00000374481 TRHP20396 242 aaPredicted RBP13.11□□□□□ -0.31
CD28-202ENST00000374481 GBP4Q96PP9 640 aa13.1□□□□□ -0.31
CD28-202ENST00000374481 HSPA5P11021 654 aaKnown RBP13.1□□□□□ -0.31
CD28-202ENST00000374481 EXOC6Q8TAG9 804 aa13.09□□□□□ -0.31
CD28-202ENST00000374481 FAM161AQ3B820 660 aa13.09□□□□□ -0.31
CD28-202ENST00000374481 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.08□□□□□ -0.32
CD28-202ENST00000374481 PLCB2Q00722 1185 aa13.07□□□□□ -0.32
CD28-202ENST00000374481 MTERF4Q7Z6M4 381 aaKnown RBP13.07□□□□□ -0.32
CD28-202ENST00000374481 RBM10P98175 930 aaKnown RBP13.06□□□□□ -0.32
CD28-202ENST00000374481 PTMSP20962 102 aa13.06□□□□□ -0.32
CD28-202ENST00000374481 KIAA2012Q0VF49 1180 aa13.06□□□□□ -0.32
CD28-202ENST00000374481 BAZ1AQ9NRL2 1556 aaPredicted RBP13.06□□□□□ -0.32
CD28-202ENST00000374481 WIZO95785 1651 aa13.06□□□□□ -0.32
CD28-202ENST00000374481 MRE11P49959 708 aa13.05□□□□□ -0.32
CD28-202ENST00000374481 CHIC2Q9UKJ5 165 aa13.05□□□□□ -0.32
CD28-202ENST00000374481 RAB3GAP2Q9H2M9 1393 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms