RNA–Protein interactions for RNA: ENST00000374399.8

NIPAL3-204, Transcript of NIPA like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPAL3, Length 1,711 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-204ENST00000374399 VPS8Q8N3P4 1428 aa24.81■■□□□ 1.56
NIPAL3-204ENST00000374399 GRIN2AQ12879 1464 aa24.81■■□□□ 1.56
NIPAL3-204ENST00000374399 SYNJ2O15056 1496 aa24.8■■□□□ 1.56
NIPAL3-204ENST00000374399 EFCAB5A4FU69 1503 aa24.71■■□□□ 1.55
NIPAL3-204ENST00000374399 SAMD9Q5K651 1589 aa24.71■■□□□ 1.55
NIPAL3-204ENST00000374399 IQGAP2Q13576 1575 aa24.7■■□□□ 1.54
NIPAL3-204ENST00000374399 CEP170Q5SW79 1584 aa24.69■■□□□ 1.54
NIPAL3-204ENST00000374399 CHMP7Q8WUX9 453 aaPredicted RBP24.68■■□□□ 1.54
NIPAL3-204ENST00000374399 KIAA0586Q9BVV6 1533 aa24.66■■□□□ 1.54
NIPAL3-204ENST00000374399 NUP160Q12769 1436 aa24.65■■□□□ 1.54
NIPAL3-204ENST00000374399 PPARGC1BQ86YN6 1023 aaKnown RBP24.64■■□□□ 1.54
NIPAL3-204ENST00000374399 FHOD3Q2V2M9 1422 aa24.63■■□□□ 1.53
NIPAL3-204ENST00000374399 UGGT2Q9NYU1 1516 aa24.61■■□□□ 1.53
NIPAL3-204ENST00000374399 P3H3Q8IVL6 736 aa24.61■■□□□ 1.53
NIPAL3-204ENST00000374399 CHD1O14646 1710 aa24.61■■□□□ 1.53
NIPAL3-204ENST00000374399 FBLN2P98095 1184 aa24.61■■□□□ 1.53
NIPAL3-204ENST00000374399 DISP1Q96F81 1524 aa24.52■■□□□ 1.52
NIPAL3-204ENST00000374399 PCF11O94913 1555 aaKnown RBP24.52■■□□□ 1.52
NIPAL3-204ENST00000374399 TRIM26Q12899 539 aaPredicted RBP24.52■■□□□ 1.52
NIPAL3-204ENST00000374399 PCGF6Q9BYE7 350 aa24.49■■□□□ 1.51
NIPAL3-204ENST00000374399 KIAA0556O60303 1618 aa24.48■■□□□ 1.51
NIPAL3-204ENST00000374399 FMN1Q68DA7 1419 aa24.46■■□□□ 1.51
NIPAL3-204ENST00000374399 CASKIN1Q8WXD9 1431 aa24.45■■□□□ 1.5
NIPAL3-204ENST00000374399 FYCO1Q9BQS8 1478 aa24.43■■□□□ 1.5
NIPAL3-204ENST00000374399 TTBK1Q5TCY1 1321 aaPredicted RBP24.42■■□□□ 1.5
NIPAL3-204ENST00000374399 MAP3K1Q13233 1512 aa24.42■■□□□ 1.5
NIPAL3-204ENST00000374399 JPH4Q96JJ6 628 aa24.41■■□□□ 1.5
NIPAL3-204ENST00000374399 TIAM1Q13009 1591 aa24.4■■□□□ 1.5
NIPAL3-204ENST00000374399 APLP2Q06481 763 aa24.4■■□□□ 1.5
NIPAL3-204ENST00000374399 KANK4Q5T7N3 995 aaPredicted RBP24.4■■□□□ 1.5
NIPAL3-204ENST00000374399 LRRIQ1Q96JM4 1722 aa24.39■■□□□ 1.49
NIPAL3-204ENST00000374399 CFAP43Q8NDM7 1665 aa24.37■■□□□ 1.49
NIPAL3-204ENST00000374399 SHROOM2Q13796 1616 aa24.36■■□□□ 1.49
NIPAL3-204ENST00000374399 CLASP1Q7Z460 1538 aa24.34■■□□□ 1.49
NIPAL3-204ENST00000374399 CARMIL2Q6F5E8 1435 aa24.28■■□□□ 1.48
NIPAL3-204ENST00000374399 LRRC9Q6ZRR7 1453 aa24.28■■□□□ 1.48
NIPAL3-204ENST00000374399 PRG4Q92954 1404 aaPredicted RBP24.27■■□□□ 1.48
NIPAL3-204ENST00000374399 ATP1B4Q9UN42 357 aaPredicted RBP24.26■■□□□ 1.47
NIPAL3-204ENST00000374399 HECW1Q76N89 1606 aa24.24■■□□□ 1.47
NIPAL3-204ENST00000374399 ERCC6L2Q5T890 1561 aa24.22■■□□□ 1.47
NIPAL3-204ENST00000374399 RAPGEF6Q8TEU7 1601 aa24.21■■□□□ 1.47
NIPAL3-204ENST00000374399 EPRSP07814 1512 aaKnown RBP24.19■■□□□ 1.46
NIPAL3-204ENST00000374399 NUP153P49790 1475 aaKnown RBP24.18■■□□□ 1.46
NIPAL3-204ENST00000374399 PLB1Q6P1J6 1458 aa24.18■■□□□ 1.46
NIPAL3-204ENST00000374399 CCDC18Q5T9S5 1454 aa24.17■■□□□ 1.46
NIPAL3-204ENST00000374399 MAGI3Q5TCQ9 1506 aa24.16■■□□□ 1.46
NIPAL3-204ENST00000374399 ABCA8O94911 1581 aa24.15■■□□□ 1.46
NIPAL3-204ENST00000374399 CDK13Q14004 1512 aaKnown RBP24.14■■□□□ 1.46
NIPAL3-204ENST00000374399 PTPRGP23470 1445 aa24.09■■□□□ 1.45
NIPAL3-204ENST00000374399 RRBP1Q9P2E9 1410 aaKnown RBP24.09■■□□□ 1.45
NIPAL3-204ENST00000374399 PHLDB1Q86UU1 1377 aa24.07■■□□□ 1.44
NIPAL3-204ENST00000374399 EHBP1L1Q8N3D4 1523 aa24.07■■□□□ 1.44
NIPAL3-204ENST00000374399 ARID3CA6NKF2 412 aa24.05■■□□□ 1.44
NIPAL3-204ENST00000374399 MTUS2Q5JR59 1369 aa24.05■■□□□ 1.44
NIPAL3-204ENST00000374399 OSCARQ8IYS5 282 aa24.04■■□□□ 1.44
NIPAL3-204ENST00000374399 ARHGEF11O15085 1522 aa24.01■■□□□ 1.43
NIPAL3-204ENST00000374399 SUPT6HQ7KZ85 1726 aaKnown RBP24■■□□□ 1.43
NIPAL3-204ENST00000374399 NCOA2Q15596 1464 aa23.99■■□□□ 1.43
NIPAL3-204ENST00000374399 ATP10BO94823 1461 aa23.97■■□□□ 1.43
NIPAL3-204ENST00000374399 CCNB3Q8WWL7 1395 aa23.97■■□□□ 1.43
NIPAL3-204ENST00000374399 UACAQ9BZF9 1416 aa23.97■■□□□ 1.43
NIPAL3-204ENST00000374399 ABCC2Q92887 1545 aa23.92■■□□□ 1.42
NIPAL3-204ENST00000374399 TROQ12816 1431 aaPredicted RBP23.89■■□□□ 1.41
NIPAL3-204ENST00000374399 FGD6Q6ZV73 1430 aa23.88■■□□□ 1.41
NIPAL3-204ENST00000374399 UHRF1BP1LA0JNW5 1464 aa23.88■■□□□ 1.41
NIPAL3-204ENST00000374399 MYOM3Q5VTT5 1437 aa23.87■■□□□ 1.41
NIPAL3-204ENST00000374399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.87■■□□□ 1.41
NIPAL3-204ENST00000374399 HNRNPUL2Q1KMD3 747 aaKnown RBP23.87■■□□□ 1.41
NIPAL3-204ENST00000374399 ADCY10Q96PN6 1610 aa23.86■■□□□ 1.41
NIPAL3-204ENST00000374399 CDK11AQ9UQ88 783 aaPredicted RBP23.84■■□□□ 1.41
NIPAL3-204ENST00000374399 KIF14Q15058 1648 aa23.84■■□□□ 1.41
NIPAL3-204ENST00000374399 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.82■■□□□ 1.4
NIPAL3-204ENST00000374399 KDM5BQ9UGL1 1544 aa23.79■■□□□ 1.4
NIPAL3-204ENST00000374399 ZCCHC11Q5TAX3 1644 aaKnown RBP23.78■■□□□ 1.4
NIPAL3-204ENST00000374399 PTPN23Q9H3S7 1636 aa23.77■■□□□ 1.4
NIPAL3-204ENST00000374399 PLEKHD1A6NEE1 506 aa23.76■■□□□ 1.39
NIPAL3-204ENST00000374399 TCOF1Q13428 1488 aaKnown RBP23.75■■□□□ 1.39
NIPAL3-204ENST00000374399 FAM50AQ14320 339 aaKnown RBP23.75■■□□□ 1.39
NIPAL3-204ENST00000374399 ABCC10Q5T3U5 1492 aa23.75■■□□□ 1.39
NIPAL3-204ENST00000374399 MIA2Q96PC5 1412 aa23.74■■□□□ 1.39
NIPAL3-204ENST00000374399 HRCP23327 699 aa23.73■■□□□ 1.39
NIPAL3-204ENST00000374399 GPATCH8Q9UKJ3 1502 aaKnown RBP23.71■■□□□ 1.39
NIPAL3-204ENST00000374399 ITGAEP38570 1179 aa23.7■■□□□ 1.38
NIPAL3-204ENST00000374399 CDC42BPAQ5VT25 1732 aa23.69■■□□□ 1.38
NIPAL3-204ENST00000374399 PTPRKQ15262 1439 aa23.68■■□□□ 1.38
NIPAL3-204ENST00000374399 ITSN2Q9NZM3 1697 aa23.67■■□□□ 1.38
NIPAL3-204ENST00000374399 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.61■■□□□ 1.37
NIPAL3-204ENST00000374399 TTC37Q6PGP7 1564 aa23.61■■□□□ 1.37
NIPAL3-204ENST00000374399 RIMBP3CA6NJZ7 1639 aa23.61■■□□□ 1.37
NIPAL3-204ENST00000374399 RIMBP3BA6NNM3 1639 aa23.61■■□□□ 1.37
NIPAL3-204ENST00000374399 RIMBP3Q9UFD9 1639 aa23.61■■□□□ 1.37
NIPAL3-204ENST00000374399 ZNF644Q9H582 1327 aaPredicted RBP23.61■■□□□ 1.37
NIPAL3-204ENST00000374399 CDC42BPBQ9Y5S2 1711 aa23.58■■□□□ 1.37
NIPAL3-204ENST00000374399 PREX2Q70Z35 1606 aa23.57■■□□□ 1.36
NIPAL3-204ENST00000374399 CFDP1Q9UEE9 299 aaPredicted RBP23.56■■□□□ 1.36
NIPAL3-204ENST00000374399 CAMSAP2Q08AD1 1489 aa23.56■■□□□ 1.36
NIPAL3-204ENST00000374399 DNMT1P26358 1616 aaKnown RBP23.55■■□□□ 1.36
NIPAL3-204ENST00000374399 WDR7Q9Y4E6 1490 aa23.54■■□□□ 1.36
NIPAL3-204ENST00000374399 SETD5Q9C0A6 1442 aa23.53■■□□□ 1.36
NIPAL3-204ENST00000374399 CCER1Q8TC90 406 aaPredicted RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms