RNA–Protein interactions for RNA: ENST00000373222.3

CHD6-202, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 2,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-202ENST00000373222 TOP2AP11388 1531 aaKnown RBP10.08□□□□□ -0.8
CHD6-202ENST00000373222 SMARCA2P51531 1590 aa10.08□□□□□ -0.8
CHD6-202ENST00000373222 BICRAQ9NZM4 1560 aa10.07□□□□□ -0.8
CHD6-202ENST00000373222 TTBK1Q5TCY1 1321 aaPredicted RBP10.05□□□□□ -0.8
CHD6-202ENST00000373222 GABBR2O75899 941 aa10.02□□□□□ -0.8
CHD6-202ENST00000373222 SOGA1O94964 1423 aa10.02□□□□□ -0.81
CHD6-202ENST00000373222 HAP1P54257 671 aaPredicted RBP10.01□□□□□ -0.81
CHD6-202ENST00000373222 RUSC2Q8N2Y8 1516 aa10.01□□□□□ -0.81
CHD6-202ENST00000373222 C19orf67A6NJJ6 358 aa10.01□□□□□ -0.81
CHD6-202ENST00000373222 FKBP8Q14318 412 aa9.97□□□□□ -0.81
CHD6-202ENST00000373222 HOMEZQ8IX15 550 aa9.93□□□□□ -0.82
CHD6-202ENST00000373222 MYCNP04198 464 aaPredicted RBP9.91□□□□□ -0.82
CHD6-202ENST00000373222 CEP162Q5TB80 1403 aa9.9□□□□□ -0.82
CHD6-202ENST00000373222 OSCARQ8IYS5 282 aa9.89□□□□□ -0.83
CHD6-202ENST00000373222 SYNJ1O43426 1573 aa9.89□□□□□ -0.83
CHD6-202ENST00000373222 UBTFP17480 764 aaKnown RBP9.88□□□□□ -0.83
CHD6-202ENST00000373222 PRKAR2AP13861 404 aaKnown RBP9.87□□□□□ -0.83
CHD6-202ENST00000373222 GTF3C3Q9Y5Q9 886 aa9.87□□□□□ -0.83
CHD6-202ENST00000373222 WRNQ14191 1432 aaPredicted RBP eCLIP9.87□□□□□ -0.836e-12■■□□□ 14.4
CHD6-202ENST00000373222 ATAD2BQ9ULI0 1458 aa9.87□□□□□ -0.83
CHD6-202ENST00000373222 PEG3Q9GZU2 1588 aa9.87□□□□□ -0.83
CHD6-202ENST00000373222 RANGAP1P46060 587 aaPredicted RBP9.84□□□□□ -0.83
CHD6-202ENST00000373222 BAZ1BQ9UIG0 1483 aaKnown RBP9.84□□□□□ -0.83
CHD6-202ENST00000373222 PCDH10Q9P2E7 1040 aa9.84□□□□□ -0.83
CHD6-202ENST00000373222 ZEB1P37275 1124 aaPredicted RBP9.83□□□□□ -0.84
CHD6-202ENST00000373222 CLCN6P51797 869 aa9.83□□□□□ -0.84
CHD6-202ENST00000373222 VSIG10Q8N0Z9 540 aa9.82□□□□□ -0.84
CHD6-202ENST00000373222 TNIKQ9UKE5 1360 aa9.82□□□□□ -0.84
CHD6-202ENST00000373222 CCER1Q8TC90 406 aaPredicted RBP9.81□□□□□ -0.84
CHD6-202ENST00000373222 FOXD4L1Q9NU39 408 aa9.78□□□□□ -0.84
CHD6-202ENST00000373222 GOLGA3Q08378 1498 aa9.78□□□□□ -0.84
CHD6-202ENST00000373222 RAPGEF2Q9Y4G8 1499 aa9.76□□□□□ -0.85
CHD6-202ENST00000373222 EEA1Q15075 1411 aa9.75□□□□□ -0.85
CHD6-202ENST00000373222 POTEIP0CG38 1075 aa9.74□□□□□ -0.85
CHD6-202ENST00000373222 KDM2AQ9Y2K7 1162 aa9.74□□□□□ -0.85
CHD6-202ENST00000373222 SPDYE1Q8NFV5 336 aaPredicted RBP9.74□□□□□ -0.85
CHD6-202ENST00000373222 CEP164Q9UPV0 1460 aa9.72□□□□□ -0.85
CHD6-202ENST00000373222 POTEMA6NI47 508 aa9.72□□□□□ -0.85
CHD6-202ENST00000373222 KIF21BO75037 1637 aa9.71□□□□□ -0.85
CHD6-202ENST00000373222 CLIP1P30622 1438 aa9.71□□□□□ -0.86
CHD6-202ENST00000373222 TOP2BQ02880 1626 aa9.7□□□□□ -0.86
CHD6-202ENST00000373222 SPDYE2BA6NHP3 402 aa9.7□□□□□ -0.86
CHD6-202ENST00000373222 SPDYE6P0CI01 402 aa9.7□□□□□ -0.86
CHD6-202ENST00000373222 SPDYE2Q495Y8 402 aa9.7□□□□□ -0.86
CHD6-202ENST00000373222 PODXL2Q9NZ53 605 aa9.69□□□□□ -0.86
CHD6-202ENST00000373222 TMEM132AQ24JP5 1023 aa9.66□□□□□ -0.86
CHD6-202ENST00000373222 POTEGQ6S5H5 508 aa9.66□□□□□ -0.86
CHD6-202ENST00000373222 ERICH6Q7L0X2 663 aa9.66□□□□□ -0.86
CHD6-202ENST00000373222 CUX1P39880 1505 aa9.66□□□□□ -0.86
CHD6-202ENST00000373222 BIVM-ERCC5R4GMW8 1640 aa9.66□□□□□ -0.86
CHD6-202ENST00000373222 FBLN2P98095 1184 aa9.65□□□□□ -0.86
CHD6-202ENST00000373222 VPS8Q8N3P4 1428 aa9.63□□□□□ -0.87
CHD6-202ENST00000373222 NCAPD3P42695 1498 aa9.63□□□□□ -0.87
CHD6-202ENST00000373222 KLHL34Q8N239 644 aa9.62□□□□□ -0.87
CHD6-202ENST00000373222 HMGXB3Q12766 1538 aa9.62□□□□□ -0.87
CHD6-202ENST00000373222 CLEC11AQ9Y240 323 aa9.61□□□□□ -0.87
CHD6-202ENST00000373222 DIEXFQ68CQ4 756 aaKnown RBP9.59□□□□□ -0.87
CHD6-202ENST00000373222 DCBLD2Q96PD2 775 aa9.59□□□□□ -0.87
CHD6-202ENST00000373222 KANK4Q5T7N3 995 aaPredicted RBP9.59□□□□□ -0.87
CHD6-202ENST00000373222 ARAP1Q96P48 1450 aa9.58□□□□□ -0.88
CHD6-202ENST00000373222 PRXQ9BXM0 1461 aa9.58□□□□□ -0.88
CHD6-202ENST00000373222 CFTRP13569 1480 aa9.57□□□□□ -0.88
CHD6-202ENST00000373222 OTUD5Q96G74 571 aa9.57□□□□□ -0.88
CHD6-202ENST00000373222 NEUROD1Q13562 356 aa9.55□□□□□ -0.88
CHD6-202ENST00000373222 C14orf37Q86TY3 774 aa9.55□□□□□ -0.88
CHD6-202ENST00000373222 ATF5Q9Y2D1 282 aaPredicted RBP9.54□□□□□ -0.88
CHD6-202ENST00000373222 ERICH3Q5RHP9 1530 aa9.53□□□□□ -0.88
CHD6-202ENST00000373222 KIF27Q86VH2 1401 aa9.53□□□□□ -0.88
CHD6-202ENST00000373222 CD44P16070 742 aaKnown RBP9.51□□□□□ -0.89
CHD6-202ENST00000373222 PRDM2Q13029 1718 aa9.51□□□□□ -0.89
CHD6-202ENST00000373222 CUX2O14529 1486 aa9.51□□□□□ -0.89
CHD6-202ENST00000373222 CC2D2AQ9P2K1 1620 aa9.5□□□□□ -0.89
CHD6-202ENST00000373222 ARHGAP35Q9NRY4 1499 aa9.5□□□□□ -0.89
CHD6-202ENST00000373222 ZNF316A6NFI3 1004 aaPredicted RBP9.49□□□□□ -0.89
CHD6-202ENST00000373222 ITGAEP38570 1179 aa9.49□□□□□ -0.89
CHD6-202ENST00000373222 FGD5Q6ZNL6 1462 aa9.48□□□□□ -0.89
CHD6-202ENST00000373222 YTHDC1Q96MU7 727 aaKnown RBP9.48□□□□□ -0.89
CHD6-202ENST00000373222 CHADLQ6NUI6 762 aa9.47□□□□□ -0.89
CHD6-202ENST00000373222 ACIN1Q9UKV3 1341 aaKnown RBP9.47□□□□□ -0.89
CHD6-202ENST00000373222 IGF1RP08069 1367 aa9.47□□□□□ -0.89
CHD6-202ENST00000373222 CADPSQ9ULU8 1353 aa9.47□□□□□ -0.89
CHD6-202ENST00000373222 NESP48681 1621 aa9.47□□□□□ -0.89
CHD6-202ENST00000373222 P3H3Q8IVL6 736 aa9.47□□□□□ -0.89
CHD6-202ENST00000373222 PELP1Q8IZL8 1130 aaKnown RBP9.47□□□□□ -0.89
CHD6-202ENST00000373222 MIER1Q8N108 512 aa9.45□□□□□ -0.9
CHD6-202ENST00000373222 RAD54L2Q9Y4B4 1467 aa9.44□□□□□ -0.9
CHD6-202ENST00000373222 DHX57Q6P158 1386 aaKnown RBP9.43□□□□□ -0.9
CHD6-202ENST00000373222 NPM2Q86SE8 214 aaKnown RBP9.43□□□□□ -0.9
CHD6-202ENST00000373222 SSUH2Q9Y2M2 353 aa9.43□□□□□ -0.9
CHD6-202ENST00000373222 CARMIL1Q5VZK9 1371 aa9.42□□□□□ -0.9
CHD6-202ENST00000373222 FANCD2Q9BXW9 1451 aa9.41□□□□□ -0.9
CHD6-202ENST00000373222 PRR29P0C7W0 189 aa9.41□□□□□ -0.9
CHD6-202ENST00000373222 ATP1B4Q9UN42 357 aaPredicted RBP9.41□□□□□ -0.9
CHD6-202ENST00000373222 ZNF579Q8NAF0 562 aaKnown RBP9.4□□□□□ -0.9
CHD6-202ENST00000373222 RRBP1Q9P2E9 1410 aaKnown RBP9.39□□□□□ -0.91
CHD6-202ENST00000373222 CCNB3Q8WWL7 1395 aa9.38□□□□□ -0.91
CHD6-202ENST00000373222 TIAM1Q13009 1591 aa9.37□□□□□ -0.91
CHD6-202ENST00000373222 FARP1Q9Y4F1 1045 aaPredicted RBP9.37□□□□□ -0.91
CHD6-202ENST00000373222 POLA1P09884 1462 aaPredicted RBP9.36□□□□□ -0.91
CHD6-202ENST00000373222 FHOD3Q2V2M9 1422 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms