RNA–Protein interactions for RNA: ENST00000373010.5

USP49-202, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 5 BASIC

Gene USP49, Length 2,446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-202ENST00000373010 FHAD1B1AJZ9 1412 aa27.94■■■□□ 2.06
USP49-202ENST00000373010 CCNB3Q8WWL7 1395 aa27.94■■■□□ 2.06
USP49-202ENST00000373010 FHOD3Q2V2M9 1422 aa27.93■■■□□ 2.06
USP49-202ENST00000373010 PCF11O94913 1555 aaKnown RBP27.93■■■□□ 2.06
USP49-202ENST00000373010 GAPVD1Q14C86 1478 aa27.92■■■□□ 2.06
USP49-202ENST00000373010 DIEXFQ68CQ4 756 aaKnown RBP27.89■■■□□ 2.05
USP49-202ENST00000373010 LRRC9Q6ZRR7 1453 aa27.89■■■□□ 2.05
USP49-202ENST00000373010 EFCAB5A4FU69 1503 aa27.89■■■□□ 2.05
USP49-202ENST00000373010 CFAP43Q8NDM7 1665 aa27.86■■■□□ 2.05
USP49-202ENST00000373010 ATP1B4Q9UN42 357 aaPredicted RBP27.86■■■□□ 2.05
USP49-202ENST00000373010 TARBP1Q13395 1621 aaKnown RBP27.84■■■□□ 2.05
USP49-202ENST00000373010 DHX57Q6P158 1386 aaKnown RBP27.84■■■□□ 2.05
USP49-202ENST00000373010 ZNF316A6NFI3 1004 aaPredicted RBP27.83■■■□□ 2.05
USP49-202ENST00000373010 ITGAEP38570 1179 aa27.82■■■□□ 2.04
USP49-202ENST00000373010 FYCO1Q9BQS8 1478 aa27.78■■■□□ 2.04
USP49-202ENST00000373010 PHLDB1Q86UU1 1377 aa27.77■■■□□ 2.04
USP49-202ENST00000373010 CASKIN1Q8WXD9 1431 aa27.76■■■□□ 2.04
USP49-202ENST00000373010 AQRO60306 1485 aaKnown RBP eCLIP27.74■■■□□ 2.03
USP49-202ENST00000373010 CLSPNQ9HAW4 1339 aa27.72■■■□□ 2.03
USP49-202ENST00000373010 MRC2Q9UBG0 1479 aa27.71■■■□□ 2.03
USP49-202ENST00000373010 SAMD9Q5K651 1589 aa27.7■■■□□ 2.02
USP49-202ENST00000373010 FMN1Q68DA7 1419 aa27.69■■■□□ 2.02
USP49-202ENST00000373010 PBRM1Q86U86 1689 aa27.69■■■□□ 2.02
USP49-202ENST00000373010 SNAPC4Q5SXM2 1469 aa27.66■■■□□ 2.02
USP49-202ENST00000373010 FAM50AQ14320 339 aaKnown RBP27.63■■■□□ 2.01
USP49-202ENST00000373010 RAB3GAP2Q9H2M9 1393 aa27.61■■■□□ 2.01
USP49-202ENST00000373010 LRRIQ1Q96JM4 1722 aa27.58■■■□□ 2.01
USP49-202ENST00000373010 ADAMTS12P58397 1594 aa27.56■■■□□ 2
USP49-202ENST00000373010 SETD5Q9C0A6 1442 aa27.53■■■□□ 2
USP49-202ENST00000373010 GRIN2BQ13224 1484 aa27.53■■■□□ 2
USP49-202ENST00000373010 ZNF608Q9ULD9 1512 aaPredicted RBP27.51■■□□□ 1.99
USP49-202ENST00000373010 WDR62O43379 1518 aa27.5■■□□□ 1.99
USP49-202ENST00000373010 MTUS2Q5JR59 1369 aa27.5■■□□□ 1.99
USP49-202ENST00000373010 IFT140Q96RY7 1462 aa27.48■■□□□ 1.99
USP49-202ENST00000373010 IQGAP2Q13576 1575 aa27.47■■□□□ 1.99
USP49-202ENST00000373010 MAPKBP1O60336 1514 aa27.44■■□□□ 1.98
USP49-202ENST00000373010 FGD6Q6ZV73 1430 aa27.44■■□□□ 1.98
USP49-202ENST00000373010 THOC2Q8NI27 1593 aaKnown RBP27.44■■□□□ 1.98
USP49-202ENST00000373010 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.42■■□□□ 1.98
USP49-202ENST00000373010 SCAF1Q9H7N4 1312 aaKnown RBP27.42■■□□□ 1.98
USP49-202ENST00000373010 NCOA2Q15596 1464 aa27.38■■□□□ 1.97
USP49-202ENST00000373010 MIER1Q8N108 512 aa27.36■■□□□ 1.97
USP49-202ENST00000373010 ERCC6Q03468 1493 aa27.36■■□□□ 1.97
USP49-202ENST00000373010 NEUROD1Q13562 356 aa27.35■■□□□ 1.97
USP49-202ENST00000373010 SUPT6HQ7KZ85 1726 aaKnown RBP27.35■■□□□ 1.97
USP49-202ENST00000373010 EHBP1L1Q8N3D4 1523 aa27.35■■□□□ 1.97
USP49-202ENST00000373010 ACIN1Q9UKV3 1341 aaKnown RBP27.35■■□□□ 1.97
USP49-202ENST00000373010 MAGI3Q5TCQ9 1506 aa27.34■■□□□ 1.97
USP49-202ENST00000373010 EIF4G3O43432 1585 aaKnown RBP27.33■■□□□ 1.96
USP49-202ENST00000373010 HECW1Q76N89 1606 aa27.31■■□□□ 1.96
USP49-202ENST00000373010 CCDC18Q5T9S5 1454 aa27.31■■□□□ 1.96
USP49-202ENST00000373010 MYOM3Q5VTT5 1437 aa27.31■■□□□ 1.96
USP49-202ENST00000373010 UGGT2Q9NYU1 1516 aa27.29■■□□□ 1.96
USP49-202ENST00000373010 PTPRKQ15262 1439 aa27.27■■□□□ 1.96
USP49-202ENST00000373010 CENPBP07199 599 aaPredicted RBP27.26■■□□□ 1.95
USP49-202ENST00000373010 EPRSP07814 1512 aaKnown RBP27.25■■□□□ 1.95
USP49-202ENST00000373010 ARHGEF11O15085 1522 aa27.24■■□□□ 1.95
USP49-202ENST00000373010 KIAA0586Q9BVV6 1533 aa27.24■■□□□ 1.95
USP49-202ENST00000373010 SIN3AQ96ST3 1273 aa27.24■■□□□ 1.95
USP49-202ENST00000373010 CDK13Q14004 1512 aaKnown RBP27.23■■□□□ 1.95
USP49-202ENST00000373010 GRIN2AQ12879 1464 aa27.23■■□□□ 1.95
USP49-202ENST00000373010 ARID3CA6NKF2 412 aa27.22■■□□□ 1.95
USP49-202ENST00000373010 PTPN23Q9H3S7 1636 aa27.21■■□□□ 1.95
USP49-202ENST00000373010 DISP1Q96F81 1524 aa27.19■■□□□ 1.94
USP49-202ENST00000373010 KIAA0556O60303 1618 aa27.18■■□□□ 1.94
USP49-202ENST00000373010 YTHDC1Q96MU7 727 aaKnown RBP27.18■■□□□ 1.94
USP49-202ENST00000373010 HFM1A2PYH4 1435 aa27.17■■□□□ 1.94
USP49-202ENST00000373010 MAGI1Q96QZ7 1491 aaPredicted RBP27.12■■□□□ 1.93
USP49-202ENST00000373010 NAIPQ13075 1403 aa27.11■■□□□ 1.93
USP49-202ENST00000373010 CHMP7Q8WUX9 453 aaPredicted RBP27.09■■□□□ 1.93
USP49-202ENST00000373010 TCOF1Q13428 1488 aaKnown RBP27.09■■□□□ 1.93
USP49-202ENST00000373010 CEP170Q5SW79 1584 aa27.07■■□□□ 1.92
USP49-202ENST00000373010 SYNJ2O15056 1496 aa27.07■■□□□ 1.92
USP49-202ENST00000373010 FBLN2P98095 1184 aa27.06■■□□□ 1.92
USP49-202ENST00000373010 UACAQ9BZF9 1416 aa27.05■■□□□ 1.92
USP49-202ENST00000373010 NUP153P49790 1475 aaKnown RBP27.04■■□□□ 1.92
USP49-202ENST00000373010 RAPGEF6Q8TEU7 1601 aa27.04■■□□□ 1.92
USP49-202ENST00000373010 CHIC2Q9UKJ5 165 aa27.03■■□□□ 1.92
USP49-202ENST00000373010 RRP7BPQ9NSQ0 103 aa27.01■■□□□ 1.92
USP49-202ENST00000373010 TIMELESSQ9UNS1 1208 aa27■■□□□ 1.91
USP49-202ENST00000373010 GTF3C3Q9Y5Q9 886 aa27■■□□□ 1.91
USP49-202ENST00000373010 MIA2Q96PC5 1412 aa27■■□□□ 1.91
USP49-202ENST00000373010 GCC2Q8IWJ2 1684 aa26.95■■□□□ 1.91
USP49-202ENST00000373010 PPP1R15AO75807 674 aaPredicted RBP26.94■■□□□ 1.9
USP49-202ENST00000373010 NUP160Q12769 1436 aa26.93■■□□□ 1.9
USP49-202ENST00000373010 PLB1Q6P1J6 1458 aa26.91■■□□□ 1.9
USP49-202ENST00000373010 KDM6BO15054 1643 aa26.91■■□□□ 1.9
USP49-202ENST00000373010 JPH4Q96JJ6 628 aa26.89■■□□□ 1.9
USP49-202ENST00000373010 TONSLQ96HA7 1378 aa26.89■■□□□ 1.89
USP49-202ENST00000373010 AKNAQ7Z591 1439 aa26.88■■□□□ 1.89
USP49-202ENST00000373010 CDK11AQ9UQ88 783 aaPredicted RBP26.88■■□□□ 1.89
USP49-202ENST00000373010 CARMIL2Q6F5E8 1435 aa26.86■■□□□ 1.89
USP49-202ENST00000373010 PRG4Q92954 1404 aaPredicted RBP26.86■■□□□ 1.89
USP49-202ENST00000373010 ZNF644Q9H582 1327 aaPredicted RBP26.85■■□□□ 1.89
USP49-202ENST00000373010 TRIM52Q96A61 297 aa26.83■■□□□ 1.89
USP49-202ENST00000373010 DAPK1P53355 1430 aa26.82■■□□□ 1.88
USP49-202ENST00000373010 TROQ12816 1431 aaPredicted RBP26.82■■□□□ 1.88
USP49-202ENST00000373010 DENND4BO75064 1496 aaPredicted RBP26.81■■□□□ 1.88
USP49-202ENST00000373010 DNMT1P26358 1616 aaKnown RBP26.8■■□□□ 1.88
USP49-202ENST00000373010 HIRIP3Q9BW71 556 aaPredicted RBP26.8■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms