RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CEP164Q9UPV0 1460 aa15.38■□□□□ 0.05
PTPRF-203ENST00000372407 CHIC2Q9UKJ5 165 aa15.37■□□□□ 0.05
PTPRF-203ENST00000372407 MRS2Q9HD23 443 aa15.37■□□□□ 0.05
PTPRF-203ENST00000372407 DNAJC5BQ9UF47 199 aa15.37■□□□□ 0.05
PTPRF-203ENST00000372407 SCAF1Q9H7N4 1312 aaKnown RBP15.36■□□□□ 0.05
PTPRF-203ENST00000372407 CHGAP10645 457 aaKnown RBP15.36■□□□□ 0.05
PTPRF-203ENST00000372407 EEA1Q15075 1411 aa15.35■□□□□ 0.05
PTPRF-203ENST00000372407 CUX2O14529 1486 aa15.34■□□□□ 0.05
PTPRF-203ENST00000372407 EIF5BO60841 1220 aaKnown RBP15.34■□□□□ 0.05
PTPRF-203ENST00000372407 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.34■□□□□ 0.05
PTPRF-203ENST00000372407 SOGA1O94964 1423 aa15.34■□□□□ 0.05
PTPRF-203ENST00000372407 CC2D2AQ9P2K1 1620 aa15.34■□□□□ 0.05
PTPRF-203ENST00000372407 BICRAQ9NZM4 1560 aa15.32■□□□□ 0.04
PTPRF-203ENST00000372407 TSPY4P0CV99 314 aa15.31■□□□□ 0.04
PTPRF-203ENST00000372407 TSPY10P0CW01 314 aa15.31■□□□□ 0.04
PTPRF-203ENST00000372407 FANCD2Q9BXW9 1451 aa15.31■□□□□ 0.04
PTPRF-203ENST00000372407 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
PTPRF-203ENST00000372407 CLIP1P30622 1438 aa15.3■□□□□ 0.04
PTPRF-203ENST00000372407 MTUS2Q5JR59 1369 aa15.3■□□□□ 0.04
PTPRF-203ENST00000372407 ESF1Q9H501 851 aaKnown RBP15.3■□□□□ 0.04
PTPRF-203ENST00000372407 STAG3Q9UJ98 1225 aa15.28■□□□□ 0.04
PTPRF-203ENST00000372407 EIF4G2P78344 907 aaKnown RBP eCLIP15.28■□□□□ 0.04
PTPRF-203ENST00000372407 WDR43Q15061 677 aaKnown RBP eCLIP15.27■□□□□ 0.04
PTPRF-203ENST00000372407 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.26■□□□□ 0.03
PTPRF-203ENST00000372407 HIRIP3Q9BW71 556 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-203ENST00000372407 KDM2AQ9Y2K7 1162 aa15.25■□□□□ 0.03
PTPRF-203ENST00000372407 NBR1Q14596 966 aa15.25■□□□□ 0.03
PTPRF-203ENST00000372407 KCNH8Q96L42 1107 aa15.24■□□□□ 0.03
PTPRF-203ENST00000372407 CARMIL1Q5VZK9 1371 aa15.24■□□□□ 0.03
PTPRF-203ENST00000372407 IRX6P78412 446 aaPredicted RBP15.22■□□□□ 0.03
PTPRF-203ENST00000372407 PLEKHD1A6NEE1 506 aa15.22■□□□□ 0.03
PTPRF-203ENST00000372407 ABCC8Q09428 1581 aa15.21■□□□□ 0.03
PTPRF-203ENST00000372407 GOLGA3Q08378 1498 aa15.2■□□□□ 0.02
PTPRF-203ENST00000372407 TRHP20396 242 aaPredicted RBP15.2■□□□□ 0.02
PTPRF-203ENST00000372407 RRP7BPQ9NSQ0 103 aa15.16■□□□□ 0.02
PTPRF-203ENST00000372407 CEP162Q5TB80 1403 aa15.16■□□□□ 0.02
PTPRF-203ENST00000372407 HMGXB3Q12766 1538 aa15.13■□□□□ 0.01
PTPRF-203ENST00000372407 PLPPR3Q6T4P5 718 aa15.13■□□□□ 0.01
PTPRF-203ENST00000372407 GLIPR1L2Q4G1C9 344 aa15.13■□□□□ 0.01
PTPRF-203ENST00000372407 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
PTPRF-203ENST00000372407 CARMIL2Q6F5E8 1435 aa15.1■□□□□ 0.01
PTPRF-203ENST00000372407 UNC13AQ9UPW8 1703 aa15.09■□□□□ 0.01
PTPRF-203ENST00000372407 NESP48681 1621 aa15.09■□□□□ 0.01
PTPRF-203ENST00000372407 ARXQ96QS3 562 aa15.09■□□□□ 0.01
PTPRF-203ENST00000372407 TNIKQ9UKE5 1360 aa15.07■□□□□ 0
PTPRF-203ENST00000372407 DDRGK1Q96HY6 314 aa15.07■□□□□ 0
PTPRF-203ENST00000372407 MYH16Q9H6N6 1097 aa15.07■□□□□ 0
PTPRF-203ENST00000372407 BECN1Q14457 450 aa15.05■□□□□ 0
PTPRF-203ENST00000372407 SUPT16HQ9Y5B9 1047 aaKnown RBP15.05■□□□□ 0
PTPRF-203ENST00000372407 CFTRP13569 1480 aa15.03■□□□□ -0
PTPRF-203ENST00000372407 ANP32EQ9BTT0 268 aa15.02■□□□□ -0
PTPRF-203ENST00000372407 RGL3Q3MIN7 710 aa15.02■□□□□ -0
PTPRF-203ENST00000372407 MRC2Q9UBG0 1479 aa15.01□□□□□ -0.01
PTPRF-203ENST00000372407 CDCA8Q53HL2 280 aa15.01□□□□□ -0.01
PTPRF-203ENST00000372407 JPH4Q96JJ6 628 aa15□□□□□ -0.01
PTPRF-203ENST00000372407 FGD5Q6ZNL6 1462 aa15□□□□□ -0.01
PTPRF-203ENST00000372407 ARID4BQ4LE39 1312 aaPredicted RBP14.98□□□□□ -0.01
PTPRF-203ENST00000372407 CFDP1Q9UEE9 299 aaPredicted RBP14.97□□□□□ -0.01
PTPRF-203ENST00000372407 KNSTRNQ9Y448 316 aa14.97□□□□□ -0.01
PTPRF-203ENST00000372407 CFAP53Q96M91 514 aa14.97□□□□□ -0.01
PTPRF-203ENST00000372407 PPP4R2Q9NY27 417 aa14.97□□□□□ -0.01
PTPRF-203ENST00000372407 CARD11Q9BXL7 1154 aa14.97□□□□□ -0.01
PTPRF-203ENST00000372407 CYB5RLQ6IPT4 315 aa14.96□□□□□ -0.01
PTPRF-203ENST00000372407 SIN3AQ96ST3 1273 aa14.96□□□□□ -0.01
PTPRF-203ENST00000372407 GAPVD1Q14C86 1478 aa14.95□□□□□ -0.02
PTPRF-203ENST00000372407 RAD54L2Q9Y4B4 1467 aa14.95□□□□□ -0.02
PTPRF-203ENST00000372407 GOLGA6L22H0YM25 854 aa14.95□□□□□ -0.02
PTPRF-203ENST00000372407 PPM1GO15355 546 aaPredicted RBP14.95□□□□□ -0.02
PTPRF-203ENST00000372407 SENP3-EIF4A1A0A087X0R7 540 aa14.94□□□□□ -0.02
PTPRF-203ENST00000372407 FHAD1B1AJZ9 1412 aa14.94□□□□□ -0.02
PTPRF-203ENST00000372407 TRIM44Q96DX7 344 aaPredicted RBP14.94□□□□□ -0.02
PTPRF-203ENST00000372407 RAPGEF2Q9Y4G8 1499 aa14.93□□□□□ -0.02
PTPRF-203ENST00000372407 AQRO60306 1485 aaKnown RBP eCLIP14.92□□□□□ -0.026e-7■■■■■ 37.5
PTPRF-203ENST00000372407 NCLP19338 710 aaKnown RBP14.91□□□□□ -0.02
PTPRF-203ENST00000372407 TIMELESSQ9UNS1 1208 aa14.91□□□□□ -0.02
PTPRF-203ENST00000372407 PPP1R15AO75807 674 aaPredicted RBP14.89□□□□□ -0.03
PTPRF-203ENST00000372407 LAMC3Q9Y6N6 1575 aa14.89□□□□□ -0.03
PTPRF-203ENST00000372407 IFT140Q96RY7 1462 aa14.87□□□□□ -0.03
PTPRF-203ENST00000372407 CCNB3Q8WWL7 1395 aa14.87□□□□□ -0.03
PTPRF-203ENST00000372407 FTSJ3Q8IY81 847 aaKnown RBP14.87□□□□□ -0.03
PTPRF-203ENST00000372407 ERICH6BQ5W0A0 696 aa14.85□□□□□ -0.03
PTPRF-203ENST00000372407 NEUROD2Q15784 382 aa14.85□□□□□ -0.03
PTPRF-203ENST00000372407 GRIN2BQ13224 1484 aa14.84□□□□□ -0.03
PTPRF-203ENST00000372407 RGS3P49796 1198 aa14.83□□□□□ -0.03
PTPRF-203ENST00000372407 SENP3Q9H4L4 574 aaPredicted RBP14.83□□□□□ -0.03
PTPRF-203ENST00000372407 NUDCQ9Y266 331 aa14.83□□□□□ -0.04
PTPRF-203ENST00000372407 TOPBP1Q92547 1522 aa14.83□□□□□ -0.04
PTPRF-203ENST00000372407 B4GALNT3Q6L9W6 998 aa14.82□□□□□ -0.04
PTPRF-203ENST00000372407 NOP58Q9Y2X3 529 aaKnown RBP14.82□□□□□ -0.04
PTPRF-203ENST00000372407 PTPRGP23470 1445 aa14.82□□□□□ -0.04
PTPRF-203ENST00000372407 CCER2I3L3R5 266 aa14.82□□□□□ -0.04
PTPRF-203ENST00000372407 FMN1Q68DA7 1419 aa14.81□□□□□ -0.04
PTPRF-203ENST00000372407 MAPK8IP3Q9UPT6 1336 aa14.81□□□□□ -0.04
PTPRF-203ENST00000372407 C14orf37Q86TY3 774 aa14.81□□□□□ -0.04
PTPRF-203ENST00000372407 LAS1LQ9Y4W2 734 aaKnown RBP14.8□□□□□ -0.04
PTPRF-203ENST00000372407 IGF1RP08069 1367 aa14.8□□□□□ -0.04
PTPRF-203ENST00000372407 CASC1Q6TDU7 716 aa14.8□□□□□ -0.04
PTPRF-203ENST00000372407 FRAT1Q92837 279 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-203ENST00000372407 PEG3Q9GZU2 1588 aa14.78□□□□□ -0.04
PTPRF-203ENST00000372407 MS4A1P11836 297 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms