RNA–Protein interactions for RNA: ENST00000368069.7

COPA-202, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene COPA, Length 4,664 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-202ENST00000368069 TMC1Q8TDI8 760 aa15.86■□□□□ 0.13
COPA-202ENST00000368069 SMARCA2P51531 1590 aa15.86■□□□□ 0.13
COPA-202ENST00000368069 NPM2Q86SE8 214 aaKnown RBP15.85■□□□□ 0.13
COPA-202ENST00000368069 RUSC2Q8N2Y8 1516 aa15.85■□□□□ 0.13
COPA-202ENST00000368069 SALL2Q9Y467 1007 aaPredicted RBP15.85■□□□□ 0.13
COPA-202ENST00000368069 FHAD1B1AJZ9 1412 aa15.85■□□□□ 0.13
COPA-202ENST00000368069 SMARCA4P51532 1647 aa15.85■□□□□ 0.13
COPA-202ENST00000368069 CANXP27824 592 aaKnown RBP15.85■□□□□ 0.13
COPA-202ENST00000368069 KDM2AQ9Y2K7 1162 aa15.84■□□□□ 0.13
COPA-202ENST00000368069 TSPY4P0CV99 314 aa15.83■□□□□ 0.12
COPA-202ENST00000368069 TSPY10P0CW01 314 aa15.83■□□□□ 0.12
COPA-202ENST00000368069 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.82■□□□□ 0.129e-9■■■■□ 20.8
COPA-202ENST00000368069 CHMP7Q8WUX9 453 aaPredicted RBP15.81■□□□□ 0.12
COPA-202ENST00000368069 CCDC136Q96JN2 1154 aa15.8■□□□□ 0.12
COPA-202ENST00000368069 SUPT16HQ9Y5B9 1047 aaKnown RBP15.8■□□□□ 0.12
COPA-202ENST00000368069 RAPGEF2Q9Y4G8 1499 aa15.8■□□□□ 0.12
COPA-202ENST00000368069 SETD5Q9C0A6 1442 aa15.78■□□□□ 0.12
COPA-202ENST00000368069 RAB3GAP2Q9H2M9 1393 aa15.74■□□□□ 0.11
COPA-202ENST00000368069 ATAD2BQ9ULI0 1458 aa15.73■□□□□ 0.11
COPA-202ENST00000368069 TIMELESSQ9UNS1 1208 aa15.73■□□□□ 0.11
COPA-202ENST00000368069 CFDP1Q9UEE9 299 aaPredicted RBP15.71■□□□□ 0.11
COPA-202ENST00000368069 ARHGAP35Q9NRY4 1499 aa15.71■□□□□ 0.11
COPA-202ENST00000368069 CHGAP10645 457 aaKnown RBP15.7■□□□□ 0.1
COPA-202ENST00000368069 PLEKHD1A6NEE1 506 aa15.69■□□□□ 0.1
COPA-202ENST00000368069 SENP3-EIF4A1A0A087X0R7 540 aa15.68■□□□□ 0.1
COPA-202ENST00000368069 EIF4G1Q04637 1599 aaKnown RBP15.66■□□□□ 0.1
COPA-202ENST00000368069 DHX57Q6P158 1386 aaKnown RBP15.65■□□□□ 0.1
COPA-202ENST00000368069 NBR1Q14596 966 aa15.64■□□□□ 0.09
COPA-202ENST00000368069 WDR43Q15061 677 aaKnown RBP eCLIP15.64■□□□□ 0.091e-6■■□□□ 11.8
COPA-202ENST00000368069 CCER2I3L3R5 266 aa15.64■□□□□ 0.09
COPA-202ENST00000368069 NEFMP07197 916 aa15.64■□□□□ 0.09
COPA-202ENST00000368069 ZBTB47Q9UFB7 747 aaPredicted RBP15.64■□□□□ 0.09
COPA-202ENST00000368069 BCL11AQ9H165 835 aa15.63■□□□□ 0.09
COPA-202ENST00000368069 RGL3Q3MIN7 710 aa15.63■□□□□ 0.09
COPA-202ENST00000368069 ANP32EQ9BTT0 268 aa15.62■□□□□ 0.09
COPA-202ENST00000368069 CARD11Q9BXL7 1154 aa15.62■□□□□ 0.09
COPA-202ENST00000368069 HSPA5P11021 654 aaKnown RBP15.59■□□□□ 0.09
COPA-202ENST00000368069 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.58■□□□□ 0.09
COPA-202ENST00000368069 KCNH8Q96L42 1107 aa15.58■□□□□ 0.08
COPA-202ENST00000368069 FHOD3Q2V2M9 1422 aa15.58■□□□□ 0.08
COPA-202ENST00000368069 FMN1Q68DA7 1419 aa15.58■□□□□ 0.08
COPA-202ENST00000368069 PPP1R15AO75807 674 aaPredicted RBP15.57■□□□□ 0.08
COPA-202ENST00000368069 PPP4R2Q9NY27 417 aa15.57■□□□□ 0.08
COPA-202ENST00000368069 TDRD9Q8NDG6 1382 aaKnown RBP15.57■□□□□ 0.08
COPA-202ENST00000368069 CADPSQ9ULU8 1353 aa15.56■□□□□ 0.08
COPA-202ENST00000368069 FOXD1Q16676 465 aa15.55■□□□□ 0.08
COPA-202ENST00000368069 NPM1P06748 294 aaKnown RBP eCLIP15.52■□□□□ 0.08
COPA-202ENST00000368069 B4GALNT3Q6L9W6 998 aa15.5■□□□□ 0.07
COPA-202ENST00000368069 UPF2Q9HAU5 1272 aaKnown RBP15.5■□□□□ 0.07
COPA-202ENST00000368069 KIF21BO75037 1637 aa15.49■□□□□ 0.07
COPA-202ENST00000368069 MPHOSPH9Q99550 1183 aa15.49■□□□□ 0.07
COPA-202ENST00000368069 STAG3Q9UJ98 1225 aa15.48■□□□□ 0.07
COPA-202ENST00000368069 SLC24A1O60721 1099 aa15.48■□□□□ 0.07
COPA-202ENST00000368069 DCAF11Q8TEB1 546 aa15.46■□□□□ 0.07
COPA-202ENST00000368069 KNSTRNQ9Y448 316 aa15.46■□□□□ 0.06
COPA-202ENST00000368069 PDS5BQ9NTI5 1447 aa15.45■□□□□ 0.06
COPA-202ENST00000368069 RBM19Q9Y4C8 960 aaKnown RBP15.44■□□□□ 0.06
COPA-202ENST00000368069 ERCC6Q03468 1493 aa15.44■□□□□ 0.06
COPA-202ENST00000368069 PKD2Q13563 968 aa15.44■□□□□ 0.06
COPA-202ENST00000368069 TSHZ2Q9NRE2 1034 aa15.43■□□□□ 0.06
COPA-202ENST00000368069 SYNJ1O43426 1573 aa15.42■□□□□ 0.06
COPA-202ENST00000368069 CDCA8Q53HL2 280 aa15.41■□□□□ 0.06
COPA-202ENST00000368069 CC2D1BQ5T0F9 858 aaKnown RBP15.41■□□□□ 0.06
COPA-202ENST00000368069 L3MBTL2Q969R5 705 aa15.41■□□□□ 0.06
COPA-202ENST00000368069 IGF1RP08069 1367 aa15.41■□□□□ 0.06
COPA-202ENST00000368069 ESF1Q9H501 851 aaKnown RBP15.39■□□□□ 0.05
COPA-202ENST00000368069 HSP90AA1P07900 732 aaKnown RBP15.38■□□□□ 0.05
COPA-202ENST00000368069 FANCD2Q9BXW9 1451 aa15.38■□□□□ 0.05
COPA-202ENST00000368069 SENP3Q9H4L4 574 aaPredicted RBP15.38■□□□□ 0.05
COPA-202ENST00000368069 DDRGK1Q96HY6 314 aa15.37■□□□□ 0.05
COPA-202ENST00000368069 FGD5Q6ZNL6 1462 aa15.36■□□□□ 0.05
COPA-202ENST00000368069 NOP58Q9Y2X3 529 aaKnown RBP15.35■□□□□ 0.05
COPA-202ENST00000368069 CCDC18Q5T9S5 1454 aa15.34■□□□□ 0.05
COPA-202ENST00000368069 ARAP1Q96P48 1450 aa15.33■□□□□ 0.05
COPA-202ENST00000368069 TMF1P82094 1093 aa15.33■□□□□ 0.05
COPA-202ENST00000368069 NUP155O75694 1391 aa15.33■□□□□ 0.04
COPA-202ENST00000368069 PHLDB1Q86UU1 1377 aa15.33■□□□□ 0.04
COPA-202ENST00000368069 ERICH6BQ5W0A0 696 aa15.32■□□□□ 0.04
COPA-202ENST00000368069 ERICH3Q5RHP9 1530 aa15.31■□□□□ 0.04
COPA-202ENST00000368069 ANKRD30AQ9BXX3 1397 aa15.31■□□□□ 0.04
COPA-202ENST00000368069 CARMIL2Q6F5E8 1435 aa15.31■□□□□ 0.04
COPA-202ENST00000368069 NCAPD3P42695 1498 aa15.3■□□□□ 0.04
COPA-202ENST00000368069 NEUROD2Q15784 382 aa15.3■□□□□ 0.04
COPA-202ENST00000368069 CFAP53Q96M91 514 aa15.29■□□□□ 0.04
COPA-202ENST00000368069 LRRC9Q6ZRR7 1453 aa15.29■□□□□ 0.04
COPA-202ENST00000368069 EIF5BO60841 1220 aaKnown RBP15.29■□□□□ 0.04
COPA-202ENST00000368069 ARXQ96QS3 562 aa15.29■□□□□ 0.04
COPA-202ENST00000368069 RAD54L2Q9Y4B4 1467 aa15.28■□□□□ 0.04
COPA-202ENST00000368069 LAS1LQ9Y4W2 734 aaKnown RBP15.28■□□□□ 0.04
COPA-202ENST00000368069 KTN1Q86UP2 1357 aaKnown RBP15.27■□□□□ 0.04
COPA-202ENST00000368069 RRBP1Q9P2E9 1410 aaKnown RBP15.27■□□□□ 0.04
COPA-202ENST00000368069 RGS3P49796 1198 aa15.27■□□□□ 0.04
COPA-202ENST00000368069 ROCK2O75116 1388 aaKnown RBP15.27■□□□□ 0.03
COPA-202ENST00000368069 FGD6Q6ZV73 1430 aa15.26■□□□□ 0.03
COPA-202ENST00000368069 BECN1Q14457 450 aa15.25■□□□□ 0.03
COPA-202ENST00000368069 TNNT2P45379 298 aaPredicted RBP15.25■□□□□ 0.03
COPA-202ENST00000368069 PRXQ9BXM0 1461 aa15.25■□□□□ 0.03
COPA-202ENST00000368069 PLPPR3Q6T4P5 718 aa15.25■□□□□ 0.03
COPA-202ENST00000368069 PPM1GO15355 546 aaPredicted RBP15.24■□□□□ 0.03
COPA-202ENST00000368069 RALBP1Q15311 655 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms