RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SYNJ2O15056 1496 aa20.68■□□□□ 0.9
SQSTM1-201ENST00000360718 GRIN2AQ12879 1464 aa20.68■□□□□ 0.9
SQSTM1-201ENST00000360718 ARHGAP35Q9NRY4 1499 aa20.66■□□□□ 0.9
SQSTM1-201ENST00000360718 ARAP1Q96P48 1450 aa20.64■□□□□ 0.89
SQSTM1-201ENST00000360718 CHMP7Q8WUX9 453 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-201ENST00000360718 FBLN2P98095 1184 aa20.61■□□□□ 0.89
SQSTM1-201ENST00000360718 CEP170Q5SW79 1584 aa20.59■□□□□ 0.89
SQSTM1-201ENST00000360718 IQGAP2Q13576 1575 aa20.57■□□□□ 0.88
SQSTM1-201ENST00000360718 CHD1O14646 1710 aa20.56■□□□□ 0.88
SQSTM1-201ENST00000360718 TRIM26Q12899 539 aaPredicted RBP20.56■□□□□ 0.88
SQSTM1-201ENST00000360718 VPS8Q8N3P4 1428 aa20.56■□□□□ 0.88
SQSTM1-201ENST00000360718 NUP160Q12769 1436 aa20.53■□□□□ 0.88
SQSTM1-201ENST00000360718 P3H3Q8IVL6 736 aa20.53■□□□□ 0.88
SQSTM1-201ENST00000360718 KIAA0586Q9BVV6 1533 aa20.53■□□□□ 0.88
SQSTM1-201ENST00000360718 SAMD9Q5K651 1589 aa20.52■□□□□ 0.87
SQSTM1-201ENST00000360718 EFCAB5A4FU69 1503 aa20.51■□□□□ 0.87
SQSTM1-201ENST00000360718 FHOD3Q2V2M9 1422 aa20.5■□□□□ 0.87
SQSTM1-201ENST00000360718 PPARGC1BQ86YN6 1023 aaKnown RBP20.48■□□□□ 0.87
SQSTM1-201ENST00000360718 UGGT2Q9NYU1 1516 aa20.46■□□□□ 0.87
SQSTM1-201ENST00000360718 DISP1Q96F81 1524 aa20.41■□□□□ 0.86
SQSTM1-201ENST00000360718 KIAA0556O60303 1618 aa20.37■□□□□ 0.85
SQSTM1-201ENST00000360718 PCF11O94913 1555 aaKnown RBP20.37■□□□□ 0.85
SQSTM1-201ENST00000360718 JPH4Q96JJ6 628 aa20.36■□□□□ 0.85
SQSTM1-201ENST00000360718 APLP2Q06481 763 aa20.34■□□□□ 0.85
SQSTM1-201ENST00000360718 TTBK1Q5TCY1 1321 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-201ENST00000360718 FMN1Q68DA7 1419 aa20.31■□□□□ 0.84
SQSTM1-201ENST00000360718 CLASP1Q7Z460 1538 aa20.3■□□□□ 0.84
SQSTM1-201ENST00000360718 SHROOM2Q13796 1616 aa20.29■□□□□ 0.84
SQSTM1-201ENST00000360718 CASKIN1Q8WXD9 1431 aa20.29■□□□□ 0.84
SQSTM1-201ENST00000360718 FYCO1Q9BQS8 1478 aa20.27■□□□□ 0.84
SQSTM1-201ENST00000360718 ZEB1P37275 1124 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-201ENST00000360718 LRRIQ1Q96JM4 1722 aa20.26■□□□□ 0.83
SQSTM1-201ENST00000360718 KANK4Q5T7N3 995 aaPredicted RBP20.25■□□□□ 0.83
SQSTM1-201ENST00000360718 PRG4Q92954 1404 aaPredicted RBP20.25■□□□□ 0.83
SQSTM1-201ENST00000360718 ATP1B4Q9UN42 357 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-201ENST00000360718 TIAM1Q13009 1591 aa20.23■□□□□ 0.83
SQSTM1-201ENST00000360718 CARMIL2Q6F5E8 1435 aa20.23■□□□□ 0.83
SQSTM1-201ENST00000360718 ERCC6L2Q5T890 1561 aa20.23■□□□□ 0.83
SQSTM1-201ENST00000360718 CFAP43Q8NDM7 1665 aa20.21■□□□□ 0.83
SQSTM1-201ENST00000360718 MAP3K1Q13233 1512 aa20.2■□□□□ 0.82
SQSTM1-201ENST00000360718 PLB1Q6P1J6 1458 aa20.15■□□□□ 0.82
SQSTM1-201ENST00000360718 HECW1Q76N89 1606 aa20.15■□□□□ 0.82
SQSTM1-201ENST00000360718 RAPGEF6Q8TEU7 1601 aa20.14■□□□□ 0.82
SQSTM1-201ENST00000360718 LRRC9Q6ZRR7 1453 aa20.13■□□□□ 0.81
SQSTM1-201ENST00000360718 OSCARQ8IYS5 282 aa20.13■□□□□ 0.81
SQSTM1-201ENST00000360718 NUP153P49790 1475 aaKnown RBP20.12■□□□□ 0.81
SQSTM1-201ENST00000360718 ARID3CA6NKF2 412 aa20.11■□□□□ 0.81
SQSTM1-201ENST00000360718 EPRSP07814 1512 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-201ENST00000360718 CDK13Q14004 1512 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-201ENST00000360718 ABCA8O94911 1581 aa20.09■□□□□ 0.81
SQSTM1-201ENST00000360718 PTPRGP23470 1445 aa20.09■□□□□ 0.81
SQSTM1-201ENST00000360718 MAGI3Q5TCQ9 1506 aa20.07■□□□□ 0.8
SQSTM1-201ENST00000360718 CCDC18Q5T9S5 1454 aa20.07■□□□□ 0.8
SQSTM1-201ENST00000360718 MTUS2Q5JR59 1369 aa20■□□□□ 0.79
SQSTM1-201ENST00000360718 UACAQ9BZF9 1416 aa19.98■□□□□ 0.79
SQSTM1-201ENST00000360718 PHLDB1Q86UU1 1377 aa19.98■□□□□ 0.79
SQSTM1-201ENST00000360718 EHBP1L1Q8N3D4 1523 aa19.97■□□□□ 0.79
SQSTM1-201ENST00000360718 ATP10BO94823 1461 aa19.96■□□□□ 0.79
SQSTM1-201ENST00000360718 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.93■□□□□ 0.78
SQSTM1-201ENST00000360718 HNRNPUL2Q1KMD3 747 aaKnown RBP19.93■□□□□ 0.78
SQSTM1-201ENST00000360718 ABCC2Q92887 1545 aa19.93■□□□□ 0.78
SQSTM1-201ENST00000360718 RRBP1Q9P2E9 1410 aaKnown RBP19.92■□□□□ 0.78
SQSTM1-201ENST00000360718 SUPT6HQ7KZ85 1726 aaKnown RBP19.92■□□□□ 0.78
SQSTM1-201ENST00000360718 NCOA2Q15596 1464 aa19.92■□□□□ 0.78
SQSTM1-201ENST00000360718 ARHGEF11O15085 1522 aa19.9■□□□□ 0.78
SQSTM1-201ENST00000360718 UHRF1BP1LA0JNW5 1464 aa19.87■□□□□ 0.77
SQSTM1-201ENST00000360718 ADCY10Q96PN6 1610 aa19.86■□□□□ 0.77
SQSTM1-201ENST00000360718 TROQ12816 1431 aaPredicted RBP19.86■□□□□ 0.77
SQSTM1-201ENST00000360718 CCNB3Q8WWL7 1395 aa19.86■□□□□ 0.77
SQSTM1-201ENST00000360718 CDK11AQ9UQ88 783 aaPredicted RBP19.85■□□□□ 0.77
SQSTM1-201ENST00000360718 KIF14Q15058 1648 aa19.85■□□□□ 0.77
SQSTM1-201ENST00000360718 ZCCHC11Q5TAX3 1644 aaKnown RBP19.83■□□□□ 0.76
SQSTM1-201ENST00000360718 KDM5BQ9UGL1 1544 aa19.82■□□□□ 0.76
SQSTM1-201ENST00000360718 MYOM3Q5VTT5 1437 aa19.81■□□□□ 0.76
SQSTM1-201ENST00000360718 FGD6Q6ZV73 1430 aa19.81■□□□□ 0.76
SQSTM1-201ENST00000360718 PLEKHD1A6NEE1 506 aa19.79■□□□□ 0.76
SQSTM1-201ENST00000360718 RIMBP3CA6NJZ7 1639 aa19.78■□□□□ 0.76
SQSTM1-201ENST00000360718 RIMBP3BA6NNM3 1639 aa19.78■□□□□ 0.76
SQSTM1-201ENST00000360718 RIMBP3Q9UFD9 1639 aa19.78■□□□□ 0.76
SQSTM1-201ENST00000360718 FAM50AQ14320 339 aaKnown RBP19.75■□□□□ 0.75
SQSTM1-201ENST00000360718 ABCC10Q5T3U5 1492 aa19.74■□□□□ 0.75
SQSTM1-201ENST00000360718 PTPN23Q9H3S7 1636 aa19.73■□□□□ 0.75
SQSTM1-201ENST00000360718 ITGAEP38570 1179 aa19.72■□□□□ 0.75
SQSTM1-201ENST00000360718 GPATCH8Q9UKJ3 1502 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-201ENST00000360718 CDC42BPAQ5VT25 1732 aa19.69■□□□□ 0.74
SQSTM1-201ENST00000360718 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.69■□□□□ 0.748e-6■■□□□ 11.9
SQSTM1-201ENST00000360718 TCOF1Q13428 1488 aaKnown RBP19.68■□□□□ 0.74
SQSTM1-201ENST00000360718 MIA2Q96PC5 1412 aa19.68■□□□□ 0.74
SQSTM1-201ENST00000360718 TTC37Q6PGP7 1564 aa19.67■□□□□ 0.74
SQSTM1-201ENST00000360718 ITSN2Q9NZM3 1697 aa19.67■□□□□ 0.74
SQSTM1-201ENST00000360718 CYB5RLQ6IPT4 315 aa19.67■□□□□ 0.74
SQSTM1-201ENST00000360718 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.67■□□□□ 0.74
SQSTM1-201ENST00000360718 ZNF644Q9H582 1327 aaPredicted RBP19.66■□□□□ 0.74
SQSTM1-201ENST00000360718 KCNH8Q96L42 1107 aa19.65■□□□□ 0.74
SQSTM1-201ENST00000360718 CCER1Q8TC90 406 aaPredicted RBP19.64■□□□□ 0.74
SQSTM1-201ENST00000360718 PTPRKQ15262 1439 aa19.64■□□□□ 0.73
SQSTM1-201ENST00000360718 WDR7Q9Y4E6 1490 aa19.63■□□□□ 0.73
SQSTM1-201ENST00000360718 ASXL2Q76L83 1435 aa19.62■□□□□ 0.73
SQSTM1-201ENST00000360718 CDC42BPBQ9Y5S2 1711 aa19.62■□□□□ 0.73
SQSTM1-201ENST00000360718 CFDP1Q9UEE9 299 aaPredicted RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms