RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 ERCC6L2Q5T890 1561 aa28.53■■■□□ 2.16
CLN3-203ENST00000357806 CHIC1Q5VXU3 224 aa28.53■■■□□ 2.16
CLN3-203ENST00000357806 CTTNBP2Q8WZ74 1663 aa28.51■■■□□ 2.15
CLN3-203ENST00000357806 EEA1Q15075 1411 aa28.51■■■□□ 2.15
CLN3-203ENST00000357806 IQGAP2Q13576 1575 aa28.47■■■□□ 2.15
CLN3-203ENST00000357806 CYB5RLQ6IPT4 315 aa28.46■■■□□ 2.15
CLN3-203ENST00000357806 PRXQ9BXM0 1461 aa28.46■■■□□ 2.15
CLN3-203ENST00000357806 PRG4Q92954 1404 aaPredicted RBP28.43■■■□□ 2.14
CLN3-203ENST00000357806 JPH4Q96JJ6 628 aa28.43■■■□□ 2.14
CLN3-203ENST00000357806 CSRNP3Q8WYN3 585 aa28.36■■■□□ 2.13
CLN3-203ENST00000357806 KIF21BO75037 1637 aa28.29■■■□□ 2.12
CLN3-203ENST00000357806 UGGT2Q9NYU1 1516 aa28.27■■■□□ 2.12
CLN3-203ENST00000357806 FAM9AQ8IZU1 332 aaPredicted RBP28.26■■■□□ 2.11
CLN3-203ENST00000357806 CARMIL2Q6F5E8 1435 aa28.24■■■□□ 2.11
CLN3-203ENST00000357806 KIAA0556O60303 1618 aa28.21■■■□□ 2.11
CLN3-203ENST00000357806 DISP1Q96F81 1524 aa28.19■■■□□ 2.1
CLN3-203ENST00000357806 TNIKQ9UKE5 1360 aa28.12■■■□□ 2.09
CLN3-203ENST00000357806 GOLGA3Q08378 1498 aa28.11■■■□□ 2.09
CLN3-203ENST00000357806 ADCY10Q96PN6 1610 aa28.11■■■□□ 2.09
CLN3-203ENST00000357806 PTPRGP23470 1445 aa28.08■■■□□ 2.08
CLN3-203ENST00000357806 SAMD9Q5K651 1589 aa28.03■■■□□ 2.08
CLN3-203ENST00000357806 TTBK1Q5TCY1 1321 aaPredicted RBP27.98■■■□□ 2.07
CLN3-203ENST00000357806 ABCC2Q92887 1545 aa27.94■■■□□ 2.06
CLN3-203ENST00000357806 UHRF1BP1LA0JNW5 1464 aa27.92■■■□□ 2.06
CLN3-203ENST00000357806 UACAQ9BZF9 1416 aa27.92■■■□□ 2.06
CLN3-203ENST00000357806 MAPKBP1O60336 1514 aa27.91■■■□□ 2.06
CLN3-203ENST00000357806 EFCAB5A4FU69 1503 aa27.9■■■□□ 2.06
CLN3-203ENST00000357806 TRHP20396 242 aaPredicted RBP27.89■■■□□ 2.06
CLN3-203ENST00000357806 NPM1P06748 294 aaKnown RBP eCLIP27.89■■■□□ 2.05
CLN3-203ENST00000357806 KIF13AQ9H1H9 1805 aa27.88■■■□□ 2.05
CLN3-203ENST00000357806 UBTFP17480 764 aaKnown RBP27.88■■■□□ 2.05
CLN3-203ENST00000357806 EHMT2Q96KQ7 1210 aa27.88■■■□□ 2.05
CLN3-203ENST00000357806 ABCA8O94911 1581 aa27.86■■■□□ 2.05
CLN3-203ENST00000357806 ZCCHC11Q5TAX3 1644 aaKnown RBP27.83■■■□□ 2.05
CLN3-203ENST00000357806 PLB1Q6P1J6 1458 aa27.83■■■□□ 2.04
CLN3-203ENST00000357806 RANGAP1P46060 587 aaPredicted RBP27.8■■■□□ 2.04
CLN3-203ENST00000357806 P3H3Q8IVL6 736 aa27.8■■■□□ 2.04
CLN3-203ENST00000357806 KDM5BQ9UGL1 1544 aa27.8■■■□□ 2.04
CLN3-203ENST00000357806 RAPGEF6Q8TEU7 1601 aa27.77■■■□□ 2.04
CLN3-203ENST00000357806 DIP2BQ9P265 1576 aa27.77■■■□□ 2.04
CLN3-203ENST00000357806 FHOD3Q2V2M9 1422 aa27.76■■■□□ 2.03
CLN3-203ENST00000357806 ABCC10Q5T3U5 1492 aa27.72■■■□□ 2.03
CLN3-203ENST00000357806 ARHGAP35Q9NRY4 1499 aa27.68■■■□□ 2.02
CLN3-203ENST00000357806 ASXL2Q76L83 1435 aa27.68■■■□□ 2.02
CLN3-203ENST00000357806 TSPOAP1O95153 1857 aa27.61■■■□□ 2.01
CLN3-203ENST00000357806 GLI2P10070 1586 aa27.59■■■□□ 2.01
CLN3-203ENST00000357806 FAM69CQ0P6D2 419 aa27.58■■■□□ 2.01
CLN3-203ENST00000357806 WDR7Q9Y4E6 1490 aa27.58■■■□□ 2.01
CLN3-203ENST00000357806 FMN1Q68DA7 1419 aa27.57■■■□□ 2
CLN3-203ENST00000357806 NUP153P49790 1475 aaKnown RBP27.57■■■□□ 2
CLN3-203ENST00000357806 ATP10BO94823 1461 aa27.55■■■□□ 2
CLN3-203ENST00000357806 HECW1Q76N89 1606 aa27.54■■■□□ 2
CLN3-203ENST00000357806 EPRSP07814 1512 aaKnown RBP27.53■■■□□ 2
CLN3-203ENST00000357806 MAP3K4Q9Y6R4 1608 aa27.52■■■□□ 2
CLN3-203ENST00000357806 CLIP1P30622 1438 aa27.5■■□□□ 1.99
CLN3-203ENST00000357806 ARID3CA6NKF2 412 aa27.48■■□□□ 1.99
CLN3-203ENST00000357806 CFAP43Q8NDM7 1665 aa27.48■■□□□ 1.99
CLN3-203ENST00000357806 PPRC1Q5VV67 1664 aaKnown RBP27.47■■□□□ 1.99
CLN3-203ENST00000357806 LRRIQ1Q96JM4 1722 aa27.45■■□□□ 1.99
CLN3-203ENST00000357806 PCF11O94913 1555 aaKnown RBP27.44■■□□□ 1.98
CLN3-203ENST00000357806 CDK13Q14004 1512 aaKnown RBP27.4■■□□□ 1.98
CLN3-203ENST00000357806 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.4■■□□□ 1.98
CLN3-203ENST00000357806 HNRNPUL2Q1KMD3 747 aaKnown RBP27.4■■□□□ 1.98
CLN3-203ENST00000357806 CEP162Q5TB80 1403 aa27.39■■□□□ 1.98
CLN3-203ENST00000357806 ABCA9Q8IUA7 1624 aa27.37■■□□□ 1.97
CLN3-203ENST00000357806 CASKIN1Q8WXD9 1431 aa27.34■■□□□ 1.97
CLN3-203ENST00000357806 KCNH8Q96L42 1107 aa27.33■■□□□ 1.97
CLN3-203ENST00000357806 FYCO1Q9BQS8 1478 aa27.33■■□□□ 1.97
CLN3-203ENST00000357806 KDM6BO15054 1643 aa27.33■■□□□ 1.96
CLN3-203ENST00000357806 TEX14Q8IWB6 1497 aa27.33■■□□□ 1.96
CLN3-203ENST00000357806 LOC105371045A0A1W2PR82 267 aa27.32■■□□□ 1.96
CLN3-203ENST00000357806 ATP1B4Q9UN42 357 aaPredicted RBP27.32■■□□□ 1.96
CLN3-203ENST00000357806 CCDC18Q5T9S5 1454 aa27.3■■□□□ 1.96
CLN3-203ENST00000357806 CD109Q6YHK3 1445 aa27.28■■□□□ 1.96
CLN3-203ENST00000357806 PLEKHD1A6NEE1 506 aa27.27■■□□□ 1.96
CLN3-203ENST00000357806 MAGI3Q5TCQ9 1506 aa27.27■■□□□ 1.96
CLN3-203ENST00000357806 KIF14Q15058 1648 aa27.21■■□□□ 1.95
CLN3-203ENST00000357806 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.21■■□□□ 1.95
CLN3-203ENST00000357806 TTC37Q6PGP7 1564 aa27.21■■□□□ 1.95
CLN3-203ENST00000357806 CDK11AQ9UQ88 783 aaPredicted RBP27.19■■□□□ 1.94
CLN3-203ENST00000357806 MYO5CQ9NQX4 1742 aa27.17■■□□□ 1.94
CLN3-203ENST00000357806 TROQ12816 1431 aaPredicted RBP27.15■■□□□ 1.94
CLN3-203ENST00000357806 CFAP74Q9C0B2 1584 aa27.14■■□□□ 1.94
CLN3-203ENST00000357806 VPS8Q8N3P4 1428 aa27.08■■□□□ 1.93
CLN3-203ENST00000357806 NEO1Q92859 1461 aa27.07■■□□□ 1.92
CLN3-203ENST00000357806 COL17A1Q9UMD9 1497 aaPredicted RBP27.05■■□□□ 1.92
CLN3-203ENST00000357806 ARAP3Q8WWN8 1544 aa27.03■■□□□ 1.92
CLN3-203ENST00000357806 PHLDB1Q86UU1 1377 aa27.03■■□□□ 1.92
CLN3-203ENST00000357806 FANCAO15360 1455 aa27.01■■□□□ 1.91
CLN3-203ENST00000357806 PREX2Q70Z35 1606 aa27.01■■□□□ 1.91
CLN3-203ENST00000357806 CDC42BPAQ5VT25 1732 aa27.01■■□□□ 1.91
CLN3-203ENST00000357806 CDC42BPBQ9Y5S2 1711 aa27.01■■□□□ 1.91
CLN3-203ENST00000357806 EHBP1L1Q8N3D4 1523 aa26.99■■□□□ 1.91
CLN3-203ENST00000357806 PLCH2O75038 1416 aa26.98■■□□□ 1.91
CLN3-203ENST00000357806 TIAM1Q13009 1591 aa26.98■■□□□ 1.91
CLN3-203ENST00000357806 RICTORQ6R327 1708 aa26.95■■□□□ 1.9
CLN3-203ENST00000357806 MTUS2Q5JR59 1369 aa26.95■■□□□ 1.9
CLN3-203ENST00000357806 ARHGAP5Q13017 1502 aa26.94■■□□□ 1.9
CLN3-203ENST00000357806 AKNAQ7Z591 1439 aa26.93■■□□□ 1.9
CLN3-203ENST00000357806 FRMPD1Q5SYB0 1578 aa26.92■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms