RNA–Protein interactions for RNA: ENST00000356660.8

BDNF-202, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 4,018 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-202ENST00000356660 RAPGEF2Q9Y4G8 1499 aa17.24■□□□□ 0.35
BDNF-202ENST00000356660 SLC4A1APQ9BWU0 796 aaKnown RBP17.23■□□□□ 0.35
BDNF-202ENST00000356660 B4GALNT3Q6L9W6 998 aa17.22■□□□□ 0.35
BDNF-202ENST00000356660 RAB3GAP2Q9H2M9 1393 aa17.2■□□□□ 0.34
BDNF-202ENST00000356660 ANP32AP39687 249 aaKnown RBP17.2■□□□□ 0.34
BDNF-202ENST00000356660 DEKP35659 375 aaKnown RBP17.17■□□□□ 0.34
BDNF-202ENST00000356660 MRS2Q9HD23 443 aa17.17■□□□□ 0.34
BDNF-202ENST00000356660 ZNF777Q9ULD5 760 aaPredicted RBP17.17■□□□□ 0.34
BDNF-202ENST00000356660 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
BDNF-202ENST00000356660 CCER2I3L3R5 266 aa17.14■□□□□ 0.33
BDNF-202ENST00000356660 CCDC136Q96JN2 1154 aa17.13■□□□□ 0.33
BDNF-202ENST00000356660 CHIC2Q9UKJ5 165 aa17.12■□□□□ 0.33
BDNF-202ENST00000356660 DAXXQ9UER7 740 aaPredicted RBP17.12■□□□□ 0.33
BDNF-202ENST00000356660 PPP4R2Q9NY27 417 aa17.11■□□□□ 0.33
BDNF-202ENST00000356660 ZBTB47Q9UFB7 747 aaPredicted RBP17.1■□□□□ 0.33
BDNF-202ENST00000356660 RTN4Q9NQC3 1192 aaKnown RBP17.09■□□□□ 0.33
BDNF-202ENST00000356660 SALL2Q9Y467 1007 aaPredicted RBP17.07■□□□□ 0.32
BDNF-202ENST00000356660 PPP1R15AO75807 674 aaPredicted RBP17.07■□□□□ 0.32
BDNF-202ENST00000356660 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
BDNF-202ENST00000356660 SETD5Q9C0A6 1442 aa17.07■□□□□ 0.32
BDNF-202ENST00000356660 MSH5O43196 834 aa17.05■□□□□ 0.32
BDNF-202ENST00000356660 NOP58Q9Y2X3 529 aaKnown RBP17.05■□□□□ 0.32
BDNF-202ENST00000356660 ANO8Q9HCE9 1232 aaPredicted RBP17.04■□□□□ 0.32
BDNF-202ENST00000356660 RRP7BPQ9NSQ0 103 aa17.02■□□□□ 0.32
BDNF-202ENST00000356660 EIF4G2P78344 907 aaKnown RBP eCLIP17.02■□□□□ 0.31
BDNF-202ENST00000356660 KIF21BO75037 1637 aa17.02■□□□□ 0.31
BDNF-202ENST00000356660 KIF27Q86VH2 1401 aa16.97■□□□□ 0.31
BDNF-202ENST00000356660 SMARCA4P51532 1647 aa16.96■□□□□ 0.31
BDNF-202ENST00000356660 FANCIQ9NVI1 1328 aa16.96■□□□□ 0.31
BDNF-202ENST00000356660 BAZ1BQ9UIG0 1483 aaKnown RBP16.96■□□□□ 0.31
BDNF-202ENST00000356660 TIMELESSQ9UNS1 1208 aa16.94■□□□□ 0.3
BDNF-202ENST00000356660 LAS1LQ9Y4W2 734 aaKnown RBP16.94■□□□□ 0.3
BDNF-202ENST00000356660 HSPA5P11021 654 aaKnown RBP16.93■□□□□ 0.3
BDNF-202ENST00000356660 MTUS2Q5JR59 1369 aa16.92■□□□□ 0.3
BDNF-202ENST00000356660 TMC1Q8TDI8 760 aa16.9■□□□□ 0.3
BDNF-202ENST00000356660 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.88■□□□□ 0.29
BDNF-202ENST00000356660 SYNJ1O43426 1573 aa16.87■□□□□ 0.29
BDNF-202ENST00000356660 ARAP1Q96P48 1450 aa16.86■□□□□ 0.29
BDNF-202ENST00000356660 FOXD1Q16676 465 aa16.85■□□□□ 0.29
BDNF-202ENST00000356660 WDR97A6NE52 1622 aa16.84■□□□□ 0.29
BDNF-202ENST00000356660 NEFMP07197 916 aa16.84■□□□□ 0.29
BDNF-202ENST00000356660 RRBP1Q9P2E9 1410 aaKnown RBP16.83■□□□□ 0.28
BDNF-202ENST00000356660 GLIPR1L2Q4G1C9 344 aa16.82■□□□□ 0.28
BDNF-202ENST00000356660 PAK3O75914 559 aaPredicted RBP16.81■□□□□ 0.28
BDNF-202ENST00000356660 KDM2AQ9Y2K7 1162 aa16.81■□□□□ 0.28
BDNF-202ENST00000356660 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.8■□□□□ 0.28
BDNF-202ENST00000356660 ERICH6BQ5W0A0 696 aa16.8■□□□□ 0.28
BDNF-202ENST00000356660 PHLDB1Q86UU1 1377 aa16.78■□□□□ 0.28
BDNF-202ENST00000356660 CCDC184Q52MB2 194 aa16.78■□□□□ 0.28
BDNF-202ENST00000356660 EIF4G1Q04637 1599 aaKnown RBP16.78■□□□□ 0.28
BDNF-202ENST00000356660 CARMIL1Q5VZK9 1371 aa16.78■□□□□ 0.28
BDNF-202ENST00000356660 CUX2O14529 1486 aa16.77■□□□□ 0.27
BDNF-202ENST00000356660 IPO9Q96P70 1041 aaKnown RBP16.76■□□□□ 0.27
BDNF-202ENST00000356660 PRKRIP1Q9H875 184 aaPredicted RBP16.73■□□□□ 0.27
BDNF-202ENST00000356660 ARHGAP35Q9NRY4 1499 aa16.73■□□□□ 0.27
BDNF-202ENST00000356660 FHAD1B1AJZ9 1412 aa16.72■□□□□ 0.27
BDNF-202ENST00000356660 CHGAP10645 457 aaKnown RBP16.72■□□□□ 0.27
BDNF-202ENST00000356660 L3MBTL2Q969R5 705 aa16.72■□□□□ 0.27
BDNF-202ENST00000356660 WASHC2AQ641Q2 1341 aa16.71■□□□□ 0.27
BDNF-202ENST00000356660 SENP3Q9H4L4 574 aaPredicted RBP16.7■□□□□ 0.26
BDNF-202ENST00000356660 ARXQ96QS3 562 aa16.7■□□□□ 0.26
BDNF-202ENST00000356660 CHMP7Q8WUX9 453 aaPredicted RBP16.69■□□□□ 0.26
BDNF-202ENST00000356660 FHOD3Q2V2M9 1422 aa16.67■□□□□ 0.26
BDNF-202ENST00000356660 ATAD2BQ9ULI0 1458 aa16.67■□□□□ 0.26
BDNF-202ENST00000356660 PODXL2Q9NZ53 605 aa16.67■□□□□ 0.26
BDNF-202ENST00000356660 IL27Q8NEV9 243 aa16.65■□□□□ 0.26
BDNF-202ENST00000356660 ZBED9Q6R2W3 1325 aa16.65■□□□□ 0.26
BDNF-202ENST00000356660 NUDCQ9Y266 331 aa16.65■□□□□ 0.26
BDNF-202ENST00000356660 TSPY4P0CV99 314 aa16.64■□□□□ 0.25
BDNF-202ENST00000356660 TSPY10P0CW01 314 aa16.64■□□□□ 0.25
BDNF-202ENST00000356660 PRXQ9BXM0 1461 aa16.64■□□□□ 0.25
BDNF-202ENST00000356660 PPM1GO15355 546 aaPredicted RBP16.62■□□□□ 0.25
BDNF-202ENST00000356660 MPHOSPH9Q99550 1183 aa16.62■□□□□ 0.25
BDNF-202ENST00000356660 RGL3Q3MIN7 710 aa16.62■□□□□ 0.25
BDNF-202ENST00000356660 LRRC9Q6ZRR7 1453 aa16.61■□□□□ 0.25
BDNF-202ENST00000356660 MAPKBP1O60336 1514 aa16.61■□□□□ 0.25
BDNF-202ENST00000356660 CANXP27824 592 aaKnown RBP16.61■□□□□ 0.25
BDNF-202ENST00000356660 CCDC18Q5T9S5 1454 aa16.6■□□□□ 0.25
BDNF-202ENST00000356660 PKNOX2Q96KN3 472 aa16.57■□□□□ 0.24
BDNF-202ENST00000356660 SLC4A3P48751 1232 aa16.56■□□□□ 0.24
BDNF-202ENST00000356660 AKNAQ7Z591 1439 aa16.56■□□□□ 0.24
BDNF-202ENST00000356660 EXOC6Q8TAG9 804 aa16.56■□□□□ 0.24
BDNF-202ENST00000356660 IGF1RP08069 1367 aa16.56■□□□□ 0.24
BDNF-202ENST00000356660 PLPPR3Q6T4P5 718 aa16.56■□□□□ 0.24
BDNF-202ENST00000356660 FMN1Q68DA7 1419 aa16.55■□□□□ 0.24
BDNF-202ENST00000356660 CARD11Q9BXL7 1154 aa16.55■□□□□ 0.24
BDNF-202ENST00000356660 RGS3P49796 1198 aa16.55■□□□□ 0.24
BDNF-202ENST00000356660 DDRGK1Q96HY6 314 aa16.55■□□□□ 0.24
BDNF-202ENST00000356660 ERICH3Q5RHP9 1530 aa16.55■□□□□ 0.24
BDNF-202ENST00000356660 PDE4AP27815 886 aa16.53■□□□□ 0.24
BDNF-202ENST00000356660 RCAN3Q9UKA8 241 aa16.53■□□□□ 0.24
BDNF-202ENST00000356660 C11orf95C9JLR9 678 aaPredicted RBP16.53■□□□□ 0.24
BDNF-202ENST00000356660 TCERG1O14776 1098 aaKnown RBP16.52■□□□□ 0.23
BDNF-202ENST00000356660 CCDC7Q96M83 1385 aa16.51■□□□□ 0.23
BDNF-202ENST00000356660 CFDP1Q9UEE9 299 aaPredicted RBP16.5■□□□□ 0.23
BDNF-202ENST00000356660 PLIN1O60240 522 aa16.5■□□□□ 0.23
BDNF-202ENST00000356660 KIF7Q2M1P5 1343 aa16.5■□□□□ 0.23
BDNF-202ENST00000356660 CNTLNQ9NXG0 1405 aa16.5■□□□□ 0.23
BDNF-202ENST00000356660 UACAQ9BZF9 1416 aa16.49■□□□□ 0.23
BDNF-202ENST00000356660 PLEKHD1A6NEE1 506 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms