RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 RBM19Q9Y4C8 960 aaKnown RBP16.66■□□□□ 0.26
SYNCRIP-201ENST00000355238 HIRIP3Q9BW71 556 aaPredicted RBP16.66■□□□□ 0.26
SYNCRIP-201ENST00000355238 MYO15BQ96JP2 1530 aa16.65■□□□□ 0.26
SYNCRIP-201ENST00000355238 CDK11BP21127 795 aaKnown RBP16.65■□□□□ 0.26
SYNCRIP-201ENST00000355238 L1TD1Q5T7N2 865 aaKnown RBP16.64■□□□□ 0.25
SYNCRIP-201ENST00000355238 ARID3CA6NKF2 412 aa16.63■□□□□ 0.25
SYNCRIP-201ENST00000355238 PABPN1Q86U42 306 aaKnown RBP eCLIP16.6■□□□□ 0.25
SYNCRIP-201ENST00000355238 CLIP1P30622 1438 aa16.58■□□□□ 0.25
SYNCRIP-201ENST00000355238 CHIC2Q9UKJ5 165 aa16.56■□□□□ 0.24
SYNCRIP-201ENST00000355238 FBLN2P98095 1184 aa16.54■□□□□ 0.24
SYNCRIP-201ENST00000355238 B4GALNT3Q6L9W6 998 aa16.53■□□□□ 0.24
SYNCRIP-201ENST00000355238 CASC1Q6TDU7 716 aa16.52■□□□□ 0.24
SYNCRIP-201ENST00000355238 KDM2AQ9Y2K7 1162 aa16.51■□□□□ 0.23
SYNCRIP-201ENST00000355238 CEP162Q5TB80 1403 aa16.51■□□□□ 0.23
SYNCRIP-201ENST00000355238 MSNP26038 577 aaKnown RBP16.5■□□□□ 0.23
SYNCRIP-201ENST00000355238 CCER2I3L3R5 266 aa16.5■□□□□ 0.23
SYNCRIP-201ENST00000355238 ZRSR1Q15695 479 aaKnown RBP16.5■□□□□ 0.23
SYNCRIP-201ENST00000355238 EEA1Q15075 1411 aa16.49■□□□□ 0.23
SYNCRIP-201ENST00000355238 MTUS2Q5JR59 1369 aa16.49■□□□□ 0.23
SYNCRIP-201ENST00000355238 CHGAP10645 457 aaKnown RBP16.49■□□□□ 0.23
SYNCRIP-201ENST00000355238 TSHZ2Q9NRE2 1034 aa16.48■□□□□ 0.23
SYNCRIP-201ENST00000355238 CHAF1AQ13111 956 aaPredicted RBP16.47■□□□□ 0.23
SYNCRIP-201ENST00000355238 RGS3P49796 1198 aa16.47■□□□□ 0.23
SYNCRIP-201ENST00000355238 ABCC9O60706 1549 aa16.46■□□□□ 0.23
SYNCRIP-201ENST00000355238 GOLGA3Q08378 1498 aa16.46■□□□□ 0.22
SYNCRIP-201ENST00000355238 HSP90AB1P08238 724 aaKnown RBP16.45■□□□□ 0.22
SYNCRIP-201ENST00000355238 FTSJ3Q8IY81 847 aaKnown RBP16.44■□□□□ 0.22
SYNCRIP-201ENST00000355238 GOLGA6L6A8MZA4 724 aa16.43■□□□□ 0.22
SYNCRIP-201ENST00000355238 ZCCHC6Q5VYS8 1495 aaKnown RBP16.42■□□□□ 0.22
SYNCRIP-201ENST00000355238 TSPY4P0CV99 314 aa16.42■□□□□ 0.22
SYNCRIP-201ENST00000355238 TSPY10P0CW01 314 aa16.42■□□□□ 0.22
SYNCRIP-201ENST00000355238 PNNQ9H307 717 aaKnown RBP16.42■□□□□ 0.22
SYNCRIP-201ENST00000355238 HSCBQ8IWL3 235 aa16.41■□□□□ 0.22
SYNCRIP-201ENST00000355238 CDCA8Q53HL2 280 aa16.4■□□□□ 0.22
SYNCRIP-201ENST00000355238 NRDCO43847 1150 aa16.4■□□□□ 0.22
SYNCRIP-201ENST00000355238 CFAP53Q96M91 514 aa16.4■□□□□ 0.22
SYNCRIP-201ENST00000355238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.39■□□□□ 0.217e-8■■□□□ 12.4
SYNCRIP-201ENST00000355238 STAG3Q9UJ98 1225 aa16.39■□□□□ 0.21
SYNCRIP-201ENST00000355238 PTMSP20962 102 aa16.39■□□□□ 0.21
SYNCRIP-201ENST00000355238 PLCB2Q00722 1185 aa16.38■□□□□ 0.21
SYNCRIP-201ENST00000355238 CHMP4BQ9H444 224 aaKnown RBP16.38■□□□□ 0.21
SYNCRIP-201ENST00000355238 MS4A1P11836 297 aa16.38■□□□□ 0.21
SYNCRIP-201ENST00000355238 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.38■□□□□ 0.21
SYNCRIP-201ENST00000355238 TIMELESSQ9UNS1 1208 aa16.38■□□□□ 0.21
SYNCRIP-201ENST00000355238 KNSTRNQ9Y448 316 aa16.37■□□□□ 0.21
SYNCRIP-201ENST00000355238 TNIKQ9UKE5 1360 aa16.37■□□□□ 0.21
SYNCRIP-201ENST00000355238 RSF1Q96T23 1441 aaPredicted RBP16.37■□□□□ 0.21
SYNCRIP-201ENST00000355238 RRP7BPQ9NSQ0 103 aa16.36■□□□□ 0.21
SYNCRIP-201ENST00000355238 TCERG1O14776 1098 aaKnown RBP16.34■□□□□ 0.21
SYNCRIP-201ENST00000355238 IPO9Q96P70 1041 aaKnown RBP16.34■□□□□ 0.21
SYNCRIP-201ENST00000355238 SENP3-EIF4A1A0A087X0R7 540 aa16.32■□□□□ 0.2
SYNCRIP-201ENST00000355238 RSPH6AQ9H0K4 717 aa16.31■□□□□ 0.2
SYNCRIP-201ENST00000355238 CARD11Q9BXL7 1154 aa16.3■□□□□ 0.2
SYNCRIP-201ENST00000355238 ESF1Q9H501 851 aaKnown RBP16.3■□□□□ 0.2
SYNCRIP-201ENST00000355238 USP35Q9P2H5 1018 aa16.29■□□□□ 0.2
SYNCRIP-201ENST00000355238 CFAP44Q96MT7 982 aa16.29■□□□□ 0.2
SYNCRIP-201ENST00000355238 GBP4Q96PP9 640 aa16.29■□□□□ 0.2
SYNCRIP-201ENST00000355238 TPRNQ4KMQ1 711 aa16.29■□□□□ 0.2
SYNCRIP-201ENST00000355238 SCRIBQ14160 1630 aa16.28■□□□□ 0.2
SYNCRIP-201ENST00000355238 FRAT1Q92837 279 aaPredicted RBP16.28■□□□□ 0.2
SYNCRIP-201ENST00000355238 SIN3AQ96ST3 1273 aa16.28■□□□□ 0.2
SYNCRIP-201ENST00000355238 ARID4BQ4LE39 1312 aaPredicted RBP16.27■□□□□ 0.2
SYNCRIP-201ENST00000355238 GOLGA6L3A6NEY3 463 aa16.26■□□□□ 0.19
SYNCRIP-201ENST00000355238 KIAA2012Q0VF49 1180 aa16.26■□□□□ 0.19
SYNCRIP-201ENST00000355238 HSP90AA2PQ14568 343 aaPredicted RBP16.23■□□□□ 0.19
SYNCRIP-201ENST00000355238 MAPK8IP3Q9UPT6 1336 aa16.23■□□□□ 0.19
SYNCRIP-201ENST00000355238 CEP164Q9UPV0 1460 aa16.23■□□□□ 0.19
SYNCRIP-201ENST00000355238 GOLGA6L4A6NEF3 574 aa16.23■□□□□ 0.19
SYNCRIP-201ENST00000355238 AMER1Q5JTC6 1135 aaPredicted RBP16.22■□□□□ 0.19
SYNCRIP-201ENST00000355238 NUDCQ9Y266 331 aa16.21■□□□□ 0.19
SYNCRIP-201ENST00000355238 NEUROD2Q15784 382 aa16.2■□□□□ 0.18
SYNCRIP-201ENST00000355238 DRC7Q8IY82 874 aa16.19■□□□□ 0.18
SYNCRIP-201ENST00000355238 SPRYD3Q8NCJ5 442 aa16.19■□□□□ 0.18
SYNCRIP-201ENST00000355238 MCCP23508 829 aa16.19■□□□□ 0.18
SYNCRIP-201ENST00000355238 CCNB3Q8WWL7 1395 aa16.18■□□□□ 0.18
SYNCRIP-201ENST00000355238 TNNT3P45378 269 aaPredicted RBP16.18■□□□□ 0.18
SYNCRIP-201ENST00000355238 GZF1Q9H116 711 aaPredicted RBP16.18■□□□□ 0.18
SYNCRIP-201ENST00000355238 RGL3Q3MIN7 710 aa16.17■□□□□ 0.18
SYNCRIP-201ENST00000355238 RCAN3Q9UKA8 241 aa16.16■□□□□ 0.18
SYNCRIP-201ENST00000355238 SLKQ9H2G2 1235 aaPredicted RBP16.16■□□□□ 0.18
SYNCRIP-201ENST00000355238 SYAP1Q96A49 352 aaPredicted RBP16.15■□□□□ 0.18
SYNCRIP-201ENST00000355238 FANCIQ9NVI1 1328 aa16.15■□□□□ 0.18
SYNCRIP-201ENST00000355238 CC2D1BQ5T0F9 858 aaKnown RBP16.14■□□□□ 0.17
SYNCRIP-201ENST00000355238 VSIG10Q8N0Z9 540 aa16.12■□□□□ 0.17
SYNCRIP-201ENST00000355238 FGD1P98174 961 aa16.12■□□□□ 0.17
SYNCRIP-201ENST00000355238 ARID3AQ99856 593 aa16.11■□□□□ 0.17
SYNCRIP-201ENST00000355238 GSE1Q14687 1217 aa16.11■□□□□ 0.17
SYNCRIP-201ENST00000355238 KCNJ4P48050 445 aa16.1■□□□□ 0.17
SYNCRIP-201ENST00000355238 HSPA5P11021 654 aaKnown RBP16.1■□□□□ 0.17
SYNCRIP-201ENST00000355238 TMF1P82094 1093 aa16.09■□□□□ 0.17
SYNCRIP-201ENST00000355238 RWDD1Q9H446 243 aaPredicted RBP16.09■□□□□ 0.17
SYNCRIP-201ENST00000355238 WRNQ14191 1432 aaPredicted RBP eCLIP16.08■□□□□ 0.17
SYNCRIP-201ENST00000355238 SETD5Q9C0A6 1442 aa16.08■□□□□ 0.16
SYNCRIP-201ENST00000355238 KTN1Q86UP2 1357 aaKnown RBP16.06■□□□□ 0.16
SYNCRIP-201ENST00000355238 NPM1P06748 294 aaKnown RBP eCLIP16.06■□□□□ 0.16
SYNCRIP-201ENST00000355238 PMFBP1Q8TBY8 1022 aa16.05■□□□□ 0.16
SYNCRIP-201ENST00000355238 CALD1Q05682 793 aaKnown RBP16.05■□□□□ 0.16
SYNCRIP-201ENST00000355238 DDX11L8A8MPP1 907 aa16.05■□□□□ 0.16
SYNCRIP-201ENST00000355238 RALBP1Q15311 655 aa16.04■□□□□ 0.16
SYNCRIP-201ENST00000355238 OS9Q13438 667 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms