RNA–Protein interactions for RNA: ENST00000354848.5

CD46-203, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,233 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-203ENST00000354848 PAK3O75914 559 aaPredicted RBP10.92□□□□□ -0.66
CD46-203ENST00000354848 SMARCA4P51532 1647 aa10.92□□□□□ -0.66
CD46-203ENST00000354848 RAB3GAP2Q9H2M9 1393 aa10.92□□□□□ -0.66
CD46-203ENST00000354848 CCDC136Q96JN2 1154 aa10.91□□□□□ -0.66
CD46-203ENST00000354848 HIRIP3Q9BW71 556 aaPredicted RBP10.91□□□□□ -0.66
CD46-203ENST00000354848 CCNB3Q8WWL7 1395 aa10.91□□□□□ -0.66
CD46-203ENST00000354848 PPP4R2Q9NY27 417 aa10.91□□□□□ -0.66
CD46-203ENST00000354848 ARAP1Q96P48 1450 aa10.9□□□□□ -0.66
CD46-203ENST00000354848 HNRNPUQ00839 825 aaKnown RBP eCLIP10.89□□□□□ -0.67
CD46-203ENST00000354848 IL27Q8NEV9 243 aa10.88□□□□□ -0.67
CD46-203ENST00000354848 SIN3AQ96ST3 1273 aa10.88□□□□□ -0.67
CD46-203ENST00000354848 UBE2Q2Q8WVN8 375 aa10.86□□□□□ -0.67
CD46-203ENST00000354848 B4GALNT3Q6L9W6 998 aa10.85□□□□□ -0.67
CD46-203ENST00000354848 RTL5Q5HYW3 569 aaPredicted RBP10.84□□□□□ -0.67
CD46-203ENST00000354848 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
CD46-203ENST00000354848 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.83□□□□□ -0.68
CD46-203ENST00000354848 TIMELESSQ9UNS1 1208 aa10.83□□□□□ -0.68
CD46-203ENST00000354848 SETD5Q9C0A6 1442 aa10.83□□□□□ -0.68
CD46-203ENST00000354848 IPO9Q96P70 1041 aaKnown RBP10.8□□□□□ -0.68
CD46-203ENST00000354848 ERICH3Q5RHP9 1530 aa10.8□□□□□ -0.68
CD46-203ENST00000354848 ANP32AP39687 249 aaKnown RBP10.78□□□□□ -0.68
CD46-203ENST00000354848 ZBTB47Q9UFB7 747 aaPredicted RBP10.77□□□□□ -0.68
CD46-203ENST00000354848 WASHC2AQ641Q2 1341 aa10.77□□□□□ -0.69
CD46-203ENST00000354848 PRXQ9BXM0 1461 aa10.75□□□□□ -0.69
CD46-203ENST00000354848 C11orf95C9JLR9 678 aaPredicted RBP10.71□□□□□ -0.69
CD46-203ENST00000354848 ARHGAP35Q9NRY4 1499 aa10.71□□□□□ -0.7
CD46-203ENST00000354848 CCDC184Q52MB2 194 aa10.71□□□□□ -0.7
CD46-203ENST00000354848 TOP2BQ02880 1626 aa10.7□□□□□ -0.7
CD46-203ENST00000354848 TONSLQ96HA7 1378 aa10.7□□□□□ -0.7
CD46-203ENST00000354848 TIAM1Q13009 1591 aa10.7□□□□□ -0.7
CD46-203ENST00000354848 ZBED9Q6R2W3 1325 aa10.69□□□□□ -0.7
CD46-203ENST00000354848 WASHC2CQ9Y4E1 1318 aa10.69□□□□□ -0.7
CD46-203ENST00000354848 PEG3Q9GZU2 1588 aa10.68□□□□□ -0.7
CD46-203ENST00000354848 USP35Q9P2H5 1018 aa10.68□□□□□ -0.7
CD46-203ENST00000354848 NCAPD3P42695 1498 aa10.68□□□□□ -0.7
CD46-203ENST00000354848 NEFMP07197 916 aa10.67□□□□□ -0.7
CD46-203ENST00000354848 FHAD1B1AJZ9 1412 aa10.67□□□□□ -0.7
CD46-203ENST00000354848 PHLDB1Q86UU1 1377 aa10.67□□□□□ -0.7
CD46-203ENST00000354848 FAM50AQ14320 339 aaKnown RBP10.67□□□□□ -0.7
CD46-203ENST00000354848 FAM9BQ8IZU0 186 aa10.67□□□□□ -0.7
CD46-203ENST00000354848 MAP3K1Q13233 1512 aa10.66□□□□□ -0.7
CD46-203ENST00000354848 BIVM-ERCC5R4GMW8 1640 aa10.66□□□□□ -0.7
CD46-203ENST00000354848 EIF5BO60841 1220 aaKnown RBP10.65□□□□□ -0.71
CD46-203ENST00000354848 LAS1LQ9Y4W2 734 aaKnown RBP10.65□□□□□ -0.71
CD46-203ENST00000354848 LRRC9Q6ZRR7 1453 aa10.65□□□□□ -0.71
CD46-203ENST00000354848 AKNAQ7Z591 1439 aa10.64□□□□□ -0.71
CD46-203ENST00000354848 BRPF3Q9ULD4 1205 aa10.64□□□□□ -0.71
CD46-203ENST00000354848 UNC13AQ9UPW8 1703 aa10.63□□□□□ -0.71
CD46-203ENST00000354848 NCOA2Q15596 1464 aa10.63□□□□□ -0.71
CD46-203ENST00000354848 CNTLNQ9NXG0 1405 aa10.63□□□□□ -0.71
CD46-203ENST00000354848 MRS2Q9HD23 443 aa10.62□□□□□ -0.71
CD46-203ENST00000354848 KDM5BQ9UGL1 1544 aa10.62□□□□□ -0.71
CD46-203ENST00000354848 PRKRIP1Q9H875 184 aaPredicted RBP10.62□□□□□ -0.71
CD46-203ENST00000354848 NPM2Q86SE8 214 aaKnown RBP10.62□□□□□ -0.71
CD46-203ENST00000354848 SMG6Q86US8 1419 aaKnown RBP10.61□□□□□ -0.71
CD46-203ENST00000354848 RNF123Q5XPI4 1314 aa10.61□□□□□ -0.71
CD46-203ENST00000354848 HSPA5P11021 654 aaKnown RBP10.6□□□□□ -0.71
CD46-203ENST00000354848 PPM1GO15355 546 aaPredicted RBP10.6□□□□□ -0.71
CD46-203ENST00000354848 CFAP43Q8NDM7 1665 aa10.58□□□□□ -0.72
CD46-203ENST00000354848 GSE1Q14687 1217 aa10.58□□□□□ -0.72
CD46-203ENST00000354848 NUDCQ9Y266 331 aa10.57□□□□□ -0.72
CD46-203ENST00000354848 CCDC18Q5T9S5 1454 aa10.57□□□□□ -0.72
CD46-203ENST00000354848 UACAQ9BZF9 1416 aa10.56□□□□□ -0.72
CD46-203ENST00000354848 PKNOX2Q96KN3 472 aa10.56□□□□□ -0.72
CD46-203ENST00000354848 KIF27Q86VH2 1401 aa10.56□□□□□ -0.72
CD46-203ENST00000354848 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.54□□□□□ -0.723e-6■■□□□ 12.8
CD46-203ENST00000354848 PDE4AP27815 886 aa10.54□□□□□ -0.72
CD46-203ENST00000354848 EIF4G2P78344 907 aaKnown RBP eCLIP10.54□□□□□ -0.72
CD46-203ENST00000354848 RSPH6AQ9H0K4 717 aa10.54□□□□□ -0.72
CD46-203ENST00000354848 TCERG1O14776 1098 aaKnown RBP10.53□□□□□ -0.72
CD46-203ENST00000354848 CCDC7Q96M83 1385 aa10.53□□□□□ -0.72
CD46-203ENST00000354848 BACH2Q9BYV9 841 aa10.52□□□□□ -0.72
CD46-203ENST00000354848 NCOA1Q15788 1441 aa10.52□□□□□ -0.72
CD46-203ENST00000354848 PTPN23Q9H3S7 1636 aa10.52□□□□□ -0.73
CD46-203ENST00000354848 FRAT1Q92837 279 aaPredicted RBP10.52□□□□□ -0.73
CD46-203ENST00000354848 PCF11O94913 1555 aaKnown RBP10.51□□□□□ -0.73
CD46-203ENST00000354848 HFM1A2PYH4 1435 aa10.51□□□□□ -0.73
CD46-203ENST00000354848 NFKBIBQ15653 356 aa10.5□□□□□ -0.73
CD46-203ENST00000354848 AQRO60306 1485 aaKnown RBP eCLIP10.5□□□□□ -0.735e-23■■■■■ 36
CD46-203ENST00000354848 POLR1AO95602 1720 aaPredicted RBP10.49□□□□□ -0.73
CD46-203ENST00000354848 CUX1P39880 1505 aa10.49□□□□□ -0.73
CD46-203ENST00000354848 FAM43AQ8N2R8 423 aa10.48□□□□□ -0.73
CD46-203ENST00000354848 ATAD2BQ9ULI0 1458 aa10.48□□□□□ -0.73
CD46-203ENST00000354848 MS4A1P11836 297 aa10.48□□□□□ -0.73
CD46-203ENST00000354848 ABCA5Q8WWZ7 1642 aa10.48□□□□□ -0.73
CD46-203ENST00000354848 PTPRKQ15262 1439 aa10.48□□□□□ -0.73
CD46-203ENST00000354848 DDRGK1Q96HY6 314 aa10.47□□□□□ -0.73
CD46-203ENST00000354848 FGD6Q6ZV73 1430 aa10.47□□□□□ -0.73
CD46-203ENST00000354848 NAIPQ13075 1403 aa10.46□□□□□ -0.73
CD46-203ENST00000354848 EXOC6Q8TAG9 804 aa10.46□□□□□ -0.74
CD46-203ENST00000354848 SENP3-EIF4A1A0A087X0R7 540 aa10.45□□□□□ -0.74
CD46-203ENST00000354848 ATP1B4Q9UN42 357 aaPredicted RBP10.45□□□□□ -0.74
CD46-203ENST00000354848 KIF7Q2M1P5 1343 aa10.44□□□□□ -0.74
CD46-203ENST00000354848 DCAF11Q8TEB1 546 aa10.44□□□□□ -0.74
CD46-203ENST00000354848 FMN1Q68DA7 1419 aa10.44□□□□□ -0.74
CD46-203ENST00000354848 RRP1P56182 461 aaKnown RBP10.43□□□□□ -0.74
CD46-203ENST00000354848 DENND4BO75064 1496 aaPredicted RBP10.42□□□□□ -0.74
CD46-203ENST00000354848 GLIPR1L2Q4G1C9 344 aa10.42□□□□□ -0.74
CD46-203ENST00000354848 SLC4A3P48751 1232 aa10.42□□□□□ -0.74
CD46-203ENST00000354848 HECW1Q76N89 1606 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms