RNA–Protein interactions for RNA: ENST00000354725.7

SND1-201, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SND1, Length 3,476 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-201ENST00000354725 MAGI1Q96QZ7 1491 aaPredicted RBP16.53■□□□□ 0.24
SND1-201ENST00000354725 GTF3C3Q9Y5Q9 886 aa16.52■□□□□ 0.24
SND1-201ENST00000354725 KLHL34Q8N239 644 aa16.51■□□□□ 0.23
SND1-201ENST00000354725 CUL7Q14999 1698 aa16.51■□□□□ 0.23
SND1-201ENST00000354725 SNAPC4Q5SXM2 1469 aa16.5■□□□□ 0.23
SND1-201ENST00000354725 RUSC2Q8N2Y8 1516 aa16.5■□□□□ 0.23
SND1-201ENST00000354725 NEUROD1Q13562 356 aa16.5■□□□□ 0.23
SND1-201ENST00000354725 AEBP2Q6ZN18 517 aaPredicted RBP16.49■□□□□ 0.23
SND1-201ENST00000354725 NCBP3Q53F19 620 aaKnown RBP16.48■□□□□ 0.23
SND1-201ENST00000354725 IGF1RP08069 1367 aa16.45■□□□□ 0.22
SND1-201ENST00000354725 SYNJ2O15056 1496 aa16.44■□□□□ 0.22
SND1-201ENST00000354725 KIF27Q86VH2 1401 aa16.44■□□□□ 0.22
SND1-201ENST00000354725 CLASP1Q7Z460 1538 aa16.42■□□□□ 0.22
SND1-201ENST00000354725 TIMELESSQ9UNS1 1208 aa16.42■□□□□ 0.22
SND1-201ENST00000354725 FHAD1B1AJZ9 1412 aa16.4■□□□□ 0.22
SND1-201ENST00000354725 CEP170Q5SW79 1584 aa16.4■□□□□ 0.22
SND1-201ENST00000354725 GRIN2AQ12879 1464 aa16.38■□□□□ 0.21
SND1-201ENST00000354725 PODXL2Q9NZ53 605 aa16.38■□□□□ 0.21
SND1-201ENST00000354725 PRXQ9BXM0 1461 aa16.37■□□□□ 0.21
SND1-201ENST00000354725 EEA1Q15075 1411 aa16.37■□□□□ 0.21
SND1-201ENST00000354725 SHROOM2Q13796 1616 aa16.36■□□□□ 0.21
SND1-201ENST00000354725 NUP160Q12769 1436 aa16.36■□□□□ 0.21
SND1-201ENST00000354725 ANP32EQ9BTT0 268 aa16.34■□□□□ 0.21
SND1-201ENST00000354725 KIF21BO75037 1637 aa16.31■□□□□ 0.2
SND1-201ENST00000354725 TNIKQ9UKE5 1360 aa16.31■□□□□ 0.2
SND1-201ENST00000354725 RANGAP1P46060 587 aaPredicted RBP16.3■□□□□ 0.2
SND1-201ENST00000354725 CEP162Q5TB80 1403 aa16.29■□□□□ 0.2
SND1-201ENST00000354725 CTTNBP2Q8WZ74 1663 aa16.28■□□□□ 0.2
SND1-201ENST00000354725 CARMIL1Q5VZK9 1371 aa16.25■□□□□ 0.19
SND1-201ENST00000354725 RAPGEF2Q9Y4G8 1499 aa16.25■□□□□ 0.19
SND1-201ENST00000354725 TULP1O00294 542 aaPredicted RBP16.22■□□□□ 0.19
SND1-201ENST00000354725 CSRNP3Q8WYN3 585 aa16.18■□□□□ 0.18
SND1-201ENST00000354725 GOLGA3Q08378 1498 aa16.18■□□□□ 0.18
SND1-201ENST00000354725 RIMBP3CA6NJZ7 1639 aa16.18■□□□□ 0.18
SND1-201ENST00000354725 RIMBP3BA6NNM3 1639 aa16.18■□□□□ 0.18
SND1-201ENST00000354725 RIMBP3Q9UFD9 1639 aa16.18■□□□□ 0.18
SND1-201ENST00000354725 KIAA0586Q9BVV6 1533 aa16.18■□□□□ 0.18
SND1-201ENST00000354725 OSCARQ8IYS5 282 aa16.17■□□□□ 0.18
SND1-201ENST00000354725 ERCC6L2Q5T890 1561 aa16.15■□□□□ 0.18
SND1-201ENST00000354725 IQGAP2Q13576 1575 aa16.15■□□□□ 0.18
SND1-201ENST00000354725 CHMP7Q8WUX9 453 aaPredicted RBP16.15■□□□□ 0.18
SND1-201ENST00000354725 DNAJC5Q9H3Z4 198 aa16.15■□□□□ 0.18
SND1-201ENST00000354725 UGGT2Q9NYU1 1516 aa16.14■□□□□ 0.17
SND1-201ENST00000354725 ARHGEF11O15085 1522 aa16.12■□□□□ 0.17
SND1-201ENST00000354725 SAMD9Q5K651 1589 aa16.11■□□□□ 0.17
SND1-201ENST00000354725 DISP1Q96F81 1524 aa16.09■□□□□ 0.17
SND1-201ENST00000354725 KIAA0556O60303 1618 aa16.05■□□□□ 0.16
SND1-201ENST00000354725 FBLN2P98095 1184 aa16.04■□□□□ 0.16
SND1-201ENST00000354725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.03■□□□□ 0.16
SND1-201ENST00000354725 ARAP1Q96P48 1450 aa16.03■□□□□ 0.16
SND1-201ENST00000354725 PRG4Q92954 1404 aaPredicted RBP15.98■□□□□ 0.15
SND1-201ENST00000354725 VPS8Q8N3P4 1428 aa15.96■□□□□ 0.15
SND1-201ENST00000354725 ANO8Q9HCE9 1232 aaPredicted RBP15.96■□□□□ 0.14
SND1-201ENST00000354725 CCER1Q8TC90 406 aaPredicted RBP15.95■□□□□ 0.14
SND1-201ENST00000354725 JPH4Q96JJ6 628 aa15.95■□□□□ 0.14
SND1-201ENST00000354725 EFCAB5A4FU69 1503 aa15.94■□□□□ 0.14
SND1-201ENST00000354725 ARXQ96QS3 562 aa15.93■□□□□ 0.14
SND1-201ENST00000354725 CLIP1P30622 1438 aa15.93■□□□□ 0.14
SND1-201ENST00000354725 ADCY10Q96PN6 1610 aa15.92■□□□□ 0.14
SND1-201ENST00000354725 ABCA8O94911 1581 aa15.9■□□□□ 0.14
SND1-201ENST00000354725 ARHGAP35Q9NRY4 1499 aa15.89■□□□□ 0.13
SND1-201ENST00000354725 LRRIQ1Q96JM4 1722 aa15.87■□□□□ 0.13
SND1-201ENST00000354725 UHRF1BP1LA0JNW5 1464 aa15.86■□□□□ 0.13
SND1-201ENST00000354725 DIEXFQ68CQ4 756 aaKnown RBP15.84■□□□□ 0.13
SND1-201ENST00000354725 UBE2Q2Q8WVN8 375 aa15.83■□□□□ 0.12
SND1-201ENST00000354725 CARMIL2Q6F5E8 1435 aa15.83■□□□□ 0.12
SND1-201ENST00000354725 ABCC2Q92887 1545 aa15.81■□□□□ 0.12
SND1-201ENST00000354725 RAPGEF6Q8TEU7 1601 aa15.79■□□□□ 0.12
SND1-201ENST00000354725 UBTFP17480 764 aaKnown RBP15.78■□□□□ 0.12
SND1-201ENST00000354725 PKNOX2Q96KN3 472 aa15.78■□□□□ 0.12
SND1-201ENST00000354725 ZCCHC11Q5TAX3 1644 aaKnown RBP15.78■□□□□ 0.12
SND1-201ENST00000354725 HAP1P54257 671 aaPredicted RBP15.77■□□□□ 0.12
SND1-201ENST00000354725 PDIA4P13667 645 aaKnown RBP15.77■□□□□ 0.12
SND1-201ENST00000354725 KDM5BQ9UGL1 1544 aa15.77■□□□□ 0.11
SND1-201ENST00000354725 ZNF316A6NFI3 1004 aaPredicted RBP15.76■□□□□ 0.11
SND1-201ENST00000354725 MAPKBP1O60336 1514 aa15.75■□□□□ 0.11
SND1-201ENST00000354725 PTPRGP23470 1445 aa15.75■□□□□ 0.11
SND1-201ENST00000354725 FHOD3Q2V2M9 1422 aa15.75■□□□□ 0.11
SND1-201ENST00000354725 PLB1Q6P1J6 1458 aa15.75■□□□□ 0.11
SND1-201ENST00000354725 UACAQ9BZF9 1416 aa15.74■□□□□ 0.11
SND1-201ENST00000354725 TSHZ2Q9NRE2 1034 aa15.73■□□□□ 0.11
SND1-201ENST00000354725 NUP153P49790 1475 aaKnown RBP15.72■□□□□ 0.11
SND1-201ENST00000354725 KIF13AQ9H1H9 1805 aa15.72■□□□□ 0.11
SND1-201ENST00000354725 PCF11O94913 1555 aaKnown RBP15.72■□□□□ 0.11
SND1-201ENST00000354725 RRBP1Q9P2E9 1410 aaKnown RBP15.72■□□□□ 0.11
SND1-201ENST00000354725 PDE4CQ08493 712 aa15.71■□□□□ 0.11
SND1-201ENST00000354725 CLSPNQ9HAW4 1339 aa15.7■□□□□ 0.1
SND1-201ENST00000354725 HECW1Q76N89 1606 aa15.67■□□□□ 0.1
SND1-201ENST00000354725 CYB5RLQ6IPT4 315 aa15.67■□□□□ 0.1
SND1-201ENST00000354725 CCDC136Q96JN2 1154 aa15.67■□□□□ 0.1
SND1-201ENST00000354725 HOMEZQ8IX15 550 aa15.66■□□□□ 0.1
SND1-201ENST00000354725 MAP3K1Q13233 1512 aa15.66■□□□□ 0.1
SND1-201ENST00000354725 ATP10BO94823 1461 aa15.65■□□□□ 0.1
SND1-201ENST00000354725 FMN1Q68DA7 1419 aa15.65■□□□□ 0.1
SND1-201ENST00000354725 CASKIN1Q8WXD9 1431 aa15.65■□□□□ 0.1
SND1-201ENST00000354725 FYCO1Q9BQS8 1478 aa15.64■□□□□ 0.09
SND1-201ENST00000354725 DHX37Q8IY37 1157 aaKnown RBP15.64■□□□□ 0.09
SND1-201ENST00000354725 DIP2BQ9P265 1576 aa15.64■□□□□ 0.09
SND1-201ENST00000354725 CFAP43Q8NDM7 1665 aa15.63■□□□□ 0.09
SND1-201ENST00000354725 KCNA4P22459 653 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms