RNA–Protein interactions for RNA: ENST00000354241.5

TRIM4-202, Transcript of tripartite motif containing 4, humanhuman

TSL 1 (best) BASIC

Gene TRIM4, Length 1,942 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-202ENST00000354241 VPS8Q8N3P4 1428 aa32.27■■■□□ 2.76
TRIM4-202ENST00000354241 SYNJ2O15056 1496 aa32.23■■■□□ 2.75
TRIM4-202ENST00000354241 GRIN2AQ12879 1464 aa32.22■■■□□ 2.75
TRIM4-202ENST00000354241 CHMP7Q8WUX9 453 aaPredicted RBP32.18■■■□□ 2.74
TRIM4-202ENST00000354241 EFCAB5A4FU69 1503 aa32.15■■■□□ 2.74
TRIM4-202ENST00000354241 FBLN2P98095 1184 aa32.14■■■□□ 2.74
TRIM4-202ENST00000354241 PPARGC1BQ86YN6 1023 aaKnown RBP32.14■■■□□ 2.74
TRIM4-202ENST00000354241 IQGAP2Q13576 1575 aa32.12■■■□□ 2.73
TRIM4-202ENST00000354241 P3H3Q8IVL6 736 aa32.08■■■□□ 2.73
TRIM4-202ENST00000354241 SAMD9Q5K651 1589 aa32.05■■■□□ 2.72
TRIM4-202ENST00000354241 CEP170Q5SW79 1584 aa32.04■■■□□ 2.72
TRIM4-202ENST00000354241 KIAA0586Q9BVV6 1533 aa32.03■■■□□ 2.72
TRIM4-202ENST00000354241 FHOD3Q2V2M9 1422 aa32.03■■■□□ 2.72
TRIM4-202ENST00000354241 APLP2Q06481 763 aa31.98■■■□□ 2.71
TRIM4-202ENST00000354241 TRIM26Q12899 539 aaPredicted RBP31.98■■■□□ 2.71
TRIM4-202ENST00000354241 CHD1O14646 1710 aa31.98■■■□□ 2.71
TRIM4-202ENST00000354241 PCGF6Q9BYE7 350 aa31.98■■■□□ 2.71
TRIM4-202ENST00000354241 NUP160Q12769 1436 aa31.96■■■□□ 2.71
TRIM4-202ENST00000354241 TTBK1Q5TCY1 1321 aaPredicted RBP31.94■■■□□ 2.7
TRIM4-202ENST00000354241 UGGT2Q9NYU1 1516 aa31.94■■■□□ 2.7
TRIM4-202ENST00000354241 PCF11O94913 1555 aaKnown RBP31.88■■■□□ 2.69
TRIM4-202ENST00000354241 FMN1Q68DA7 1419 aa31.85■■■□□ 2.69
TRIM4-202ENST00000354241 KIAA0556O60303 1618 aa31.8■■■□□ 2.68
TRIM4-202ENST00000354241 DISP1Q96F81 1524 aa31.79■■■□□ 2.68
TRIM4-202ENST00000354241 FYCO1Q9BQS8 1478 aa31.78■■■□□ 2.68
TRIM4-202ENST00000354241 CASKIN1Q8WXD9 1431 aa31.77■■■□□ 2.68
TRIM4-202ENST00000354241 ATP1B4Q9UN42 357 aaPredicted RBP31.76■■■□□ 2.67
TRIM4-202ENST00000354241 JPH4Q96JJ6 628 aa31.73■■■□□ 2.67
TRIM4-202ENST00000354241 TIAM1Q13009 1591 aa31.72■■■□□ 2.67
TRIM4-202ENST00000354241 MAP3K1Q13233 1512 aa31.69■■■□□ 2.66
TRIM4-202ENST00000354241 CFAP43Q8NDM7 1665 aa31.69■■■□□ 2.66
TRIM4-202ENST00000354241 KANK4Q5T7N3 995 aaPredicted RBP31.68■■■□□ 2.66
TRIM4-202ENST00000354241 CARMIL2Q6F5E8 1435 aa31.66■■■□□ 2.66
TRIM4-202ENST00000354241 LRRIQ1Q96JM4 1722 aa31.61■■■□□ 2.65
TRIM4-202ENST00000354241 HECW1Q76N89 1606 aa31.58■■■□□ 2.65
TRIM4-202ENST00000354241 SHROOM2Q13796 1616 aa31.57■■■□□ 2.64
TRIM4-202ENST00000354241 PRG4Q92954 1404 aaPredicted RBP31.56■■■□□ 2.64
TRIM4-202ENST00000354241 LRRC9Q6ZRR7 1453 aa31.55■■■□□ 2.64
TRIM4-202ENST00000354241 CLASP1Q7Z460 1538 aa31.54■■■□□ 2.64
TRIM4-202ENST00000354241 RAPGEF6Q8TEU7 1601 aa31.49■■■□□ 2.63
TRIM4-202ENST00000354241 CCDC18Q5T9S5 1454 aa31.48■■■□□ 2.63
TRIM4-202ENST00000354241 EPRSP07814 1512 aaKnown RBP31.43■■■□□ 2.62
TRIM4-202ENST00000354241 PLB1Q6P1J6 1458 aa31.4■■■□□ 2.62
TRIM4-202ENST00000354241 CDK13Q14004 1512 aaKnown RBP31.39■■■□□ 2.62
TRIM4-202ENST00000354241 MTUS2Q5JR59 1369 aa31.38■■■□□ 2.61
TRIM4-202ENST00000354241 ERCC6L2Q5T890 1561 aa31.38■■■□□ 2.61
TRIM4-202ENST00000354241 ARID3CA6NKF2 412 aa31.37■■■□□ 2.61
TRIM4-202ENST00000354241 NUP153P49790 1475 aaKnown RBP31.37■■■□□ 2.61
TRIM4-202ENST00000354241 PTPRGP23470 1445 aa31.34■■■□□ 2.61
TRIM4-202ENST00000354241 ABCA8O94911 1581 aa31.33■■■□□ 2.61
TRIM4-202ENST00000354241 EHBP1L1Q8N3D4 1523 aa31.33■■■□□ 2.61
TRIM4-202ENST00000354241 MAGI3Q5TCQ9 1506 aa31.3■■■□□ 2.6
TRIM4-202ENST00000354241 OSCARQ8IYS5 282 aa31.28■■■□□ 2.6
TRIM4-202ENST00000354241 RRBP1Q9P2E9 1410 aaKnown RBP31.27■■■□□ 2.6
TRIM4-202ENST00000354241 SUPT6HQ7KZ85 1726 aaKnown RBP31.26■■■□□ 2.6
TRIM4-202ENST00000354241 PHLDB1Q86UU1 1377 aa31.26■■■□□ 2.59
TRIM4-202ENST00000354241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.24■■■□□ 2.59
TRIM4-202ENST00000354241 HNRNPUL2Q1KMD3 747 aaKnown RBP31.24■■■□□ 2.59
TRIM4-202ENST00000354241 CCNB3Q8WWL7 1395 aa31.2■■■□□ 2.59
TRIM4-202ENST00000354241 NCOA2Q15596 1464 aa31.19■■■□□ 2.58
TRIM4-202ENST00000354241 UACAQ9BZF9 1416 aa31.17■■■□□ 2.58
TRIM4-202ENST00000354241 CDK11AQ9UQ88 783 aaPredicted RBP31.15■■■□□ 2.58
TRIM4-202ENST00000354241 ATP10BO94823 1461 aa31.11■■■□□ 2.57
TRIM4-202ENST00000354241 ARHGEF11O15085 1522 aa31.11■■■□□ 2.57
TRIM4-202ENST00000354241 ABCC2Q92887 1545 aa31.08■■■□□ 2.57
TRIM4-202ENST00000354241 TROQ12816 1431 aaPredicted RBP31.06■■■□□ 2.56
TRIM4-202ENST00000354241 MYOM3Q5VTT5 1437 aa31.05■■■□□ 2.56
TRIM4-202ENST00000354241 FGD6Q6ZV73 1430 aa31.05■■■□□ 2.56
TRIM4-202ENST00000354241 FAM50AQ14320 339 aaKnown RBP31.03■■■□□ 2.56
TRIM4-202ENST00000354241 ADCY10Q96PN6 1610 aa30.99■■■□□ 2.55
TRIM4-202ENST00000354241 PLEKHD1A6NEE1 506 aa30.99■■■□□ 2.55
TRIM4-202ENST00000354241 ITGAEP38570 1179 aa30.98■■■□□ 2.55
TRIM4-202ENST00000354241 UHRF1BP1LA0JNW5 1464 aa30.97■■■□□ 2.55
TRIM4-202ENST00000354241 KIF14Q15058 1648 aa30.96■■■□□ 2.55
TRIM4-202ENST00000354241 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.93■■■□□ 2.54
TRIM4-202ENST00000354241 PTPN23Q9H3S7 1636 aa30.93■■■□□ 2.54
TRIM4-202ENST00000354241 HRCP23327 699 aa30.92■■■□□ 2.54
TRIM4-202ENST00000354241 ZCCHC11Q5TAX3 1644 aaKnown RBP30.91■■■□□ 2.54
TRIM4-202ENST00000354241 MIA2Q96PC5 1412 aa30.86■■■□□ 2.53
TRIM4-202ENST00000354241 KDM5BQ9UGL1 1544 aa30.86■■■□□ 2.53
TRIM4-202ENST00000354241 ITSN2Q9NZM3 1697 aa30.85■■■□□ 2.53
TRIM4-202ENST00000354241 TCOF1Q13428 1488 aaKnown RBP30.83■■■□□ 2.53
TRIM4-202ENST00000354241 ABCC10Q5T3U5 1492 aa30.78■■■□□ 2.52
TRIM4-202ENST00000354241 CCER1Q8TC90 406 aaPredicted RBP30.78■■■□□ 2.52
TRIM4-202ENST00000354241 GPATCH8Q9UKJ3 1502 aaKnown RBP30.78■■■□□ 2.52
TRIM4-202ENST00000354241 CDC42BPAQ5VT25 1732 aa30.77■■■□□ 2.52
TRIM4-202ENST00000354241 CFDP1Q9UEE9 299 aaPredicted RBP30.72■■■□□ 2.51
TRIM4-202ENST00000354241 PTPRKQ15262 1439 aa30.67■■■□□ 2.5
TRIM4-202ENST00000354241 KCNH8Q96L42 1107 aa30.67■■■□□ 2.5
TRIM4-202ENST00000354241 TTC37Q6PGP7 1564 aa30.66■■■□□ 2.5
TRIM4-202ENST00000354241 ZNF644Q9H582 1327 aaPredicted RBP30.66■■■□□ 2.5
TRIM4-202ENST00000354241 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.66■■■□□ 2.5
TRIM4-202ENST00000354241 RIMBP3CA6NJZ7 1639 aa30.66■■■□□ 2.5
TRIM4-202ENST00000354241 RIMBP3BA6NNM3 1639 aa30.66■■■□□ 2.5
TRIM4-202ENST00000354241 RIMBP3Q9UFD9 1639 aa30.66■■■□□ 2.5
TRIM4-202ENST00000354241 CAMSAP2Q08AD1 1489 aa30.66■■■□□ 2.5
TRIM4-202ENST00000354241 ZNF777Q9ULD5 760 aaPredicted RBP30.64■■■□□ 2.5
TRIM4-202ENST00000354241 SETD5Q9C0A6 1442 aa30.63■■■□□ 2.49
TRIM4-202ENST00000354241 PREX2Q70Z35 1606 aa30.63■■■□□ 2.49
TRIM4-202ENST00000354241 ZEB1P37275 1124 aaPredicted RBP30.62■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms