RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 WDR43Q15061 677 aaKnown RBP eCLIP15.94■□□□□ 0.14
COL12A1-202ENST00000345356 SLC24A1O60721 1099 aa15.93■□□□□ 0.14
COL12A1-202ENST00000345356 DNTTIP2Q5QJE6 756 aaKnown RBP15.93■□□□□ 0.14
COL12A1-202ENST00000345356 PTMAP06454 111 aaKnown RBP15.91■□□□□ 0.14
COL12A1-202ENST00000345356 ARID3CA6NKF2 412 aa15.91■□□□□ 0.14
COL12A1-202ENST00000345356 NCLP19338 710 aaKnown RBP15.91■□□□□ 0.14
COL12A1-202ENST00000345356 CDK11BP21127 795 aaKnown RBP15.9■□□□□ 0.14
COL12A1-202ENST00000345356 ARID4BQ4LE39 1312 aaPredicted RBP15.89■□□□□ 0.13
COL12A1-202ENST00000345356 L1TD1Q5T7N2 865 aaKnown RBP15.88■□□□□ 0.13
COL12A1-202ENST00000345356 CEP162Q5TB80 1403 aa15.87■□□□□ 0.13
COL12A1-202ENST00000345356 CLIP1P30622 1438 aa15.85■□□□□ 0.13
COL12A1-202ENST00000345356 ZNF777Q9ULD5 760 aaPredicted RBP15.85■□□□□ 0.13
COL12A1-202ENST00000345356 CHIC2Q9UKJ5 165 aa15.85■□□□□ 0.13
COL12A1-202ENST00000345356 RGS3P49796 1198 aa15.84■□□□□ 0.13
COL12A1-202ENST00000345356 CCER2I3L3R5 266 aa15.81■□□□□ 0.12
COL12A1-202ENST00000345356 PNNQ9H307 717 aaKnown RBP15.81■□□□□ 0.12
COL12A1-202ENST00000345356 IPO9Q96P70 1041 aaKnown RBP15.79■□□□□ 0.12
COL12A1-202ENST00000345356 AMER1Q5JTC6 1135 aaPredicted RBP15.78■□□□□ 0.12
COL12A1-202ENST00000345356 KDM2AQ9Y2K7 1162 aa15.76■□□□□ 0.11
COL12A1-202ENST00000345356 MSNP26038 577 aaKnown RBP15.76■□□□□ 0.11
COL12A1-202ENST00000345356 PABPN1Q86U42 306 aaKnown RBP eCLIP15.76■□□□□ 0.11
COL12A1-202ENST00000345356 SIN3AQ96ST3 1273 aa15.75■□□□□ 0.11
COL12A1-202ENST00000345356 MYH16Q9H6N6 1097 aa15.74■□□□□ 0.11
COL12A1-202ENST00000345356 VSIG10Q8N0Z9 540 aa15.73■□□□□ 0.11
COL12A1-202ENST00000345356 RSPH6AQ9H0K4 717 aa15.72■□□□□ 0.11
COL12A1-202ENST00000345356 ZCCHC6Q5VYS8 1495 aaKnown RBP15.7■□□□□ 0.1
COL12A1-202ENST00000345356 HSP90AA2PQ14568 343 aaPredicted RBP15.7■□□□□ 0.1
COL12A1-202ENST00000345356 ARID3AQ99856 593 aa15.69■□□□□ 0.1
COL12A1-202ENST00000345356 TPRNQ4KMQ1 711 aa15.68■□□□□ 0.1
COL12A1-202ENST00000345356 GOLGA3Q08378 1498 aa15.68■□□□□ 0.1
COL12A1-202ENST00000345356 HSP90AB1P08238 724 aaKnown RBP15.68■□□□□ 0.1
COL12A1-202ENST00000345356 PLCB2Q00722 1185 aa15.67■□□□□ 0.1
COL12A1-202ENST00000345356 FANCIQ9NVI1 1328 aa15.66■□□□□ 0.1
COL12A1-202ENST00000345356 SPRYD3Q8NCJ5 442 aa15.66■□□□□ 0.1
COL12A1-202ENST00000345356 TCERG1O14776 1098 aaKnown RBP15.66■□□□□ 0.1
COL12A1-202ENST00000345356 PRKCSHP14314 528 aaPredicted RBP15.66■□□□□ 0.1
COL12A1-202ENST00000345356 RRP7BPQ9NSQ0 103 aa15.66■□□□□ 0.1
COL12A1-202ENST00000345356 TNIKQ9UKE5 1360 aa15.65■□□□□ 0.1
COL12A1-202ENST00000345356 GZF1Q9H116 711 aaPredicted RBP15.65■□□□□ 0.1
COL12A1-202ENST00000345356 USP35Q9P2H5 1018 aa15.64■□□□□ 0.09
COL12A1-202ENST00000345356 HSCBQ8IWL3 235 aa15.63■□□□□ 0.09
COL12A1-202ENST00000345356 MTUS2Q5JR59 1369 aa15.62■□□□□ 0.09
COL12A1-202ENST00000345356 CHAF1AQ13111 956 aaPredicted RBP15.62■□□□□ 0.09
COL12A1-202ENST00000345356 GOLGA6L3A6NEY3 463 aa15.61■□□□□ 0.09
COL12A1-202ENST00000345356 SLKQ9H2G2 1235 aaPredicted RBP15.61■□□□□ 0.09
COL12A1-202ENST00000345356 FTSJ3Q8IY81 847 aaKnown RBP15.6■□□□□ 0.09
COL12A1-202ENST00000345356 EEA1Q15075 1411 aa15.6■□□□□ 0.09
COL12A1-202ENST00000345356 ANO8Q9HCE9 1232 aaPredicted RBP15.59■□□□□ 0.09
COL12A1-202ENST00000345356 GSE1Q14687 1217 aa15.58■□□□□ 0.08
COL12A1-202ENST00000345356 TIMELESSQ9UNS1 1208 aa15.58■□□□□ 0.08
COL12A1-202ENST00000345356 FRAT1Q92837 279 aaPredicted RBP15.58■□□□□ 0.08
COL12A1-202ENST00000345356 CHGAP10645 457 aaKnown RBP15.56■□□□□ 0.08
COL12A1-202ENST00000345356 ZBTB7CA1YPR0 619 aa15.56■□□□□ 0.08
COL12A1-202ENST00000345356 CASC1Q6TDU7 716 aa15.56■□□□□ 0.08
COL12A1-202ENST00000345356 FBLN2P98095 1184 aa15.56■□□□□ 0.08
COL12A1-202ENST00000345356 KCNH8Q96L42 1107 aa15.55■□□□□ 0.08
COL12A1-202ENST00000345356 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.55■□□□□ 0.08
COL12A1-202ENST00000345356 ABCC9O60706 1549 aa15.55■□□□□ 0.08
COL12A1-202ENST00000345356 ZRSR1Q15695 479 aaKnown RBP15.53■□□□□ 0.08
COL12A1-202ENST00000345356 SCRIBQ14160 1630 aa15.53■□□□□ 0.08
COL12A1-202ENST00000345356 CARD11Q9BXL7 1154 aa15.52■□□□□ 0.08
COL12A1-202ENST00000345356 KNSTRNQ9Y448 316 aa15.52■□□□□ 0.07
COL12A1-202ENST00000345356 NEUROD2Q15784 382 aa15.51■□□□□ 0.07
COL12A1-202ENST00000345356 GBP4Q96PP9 640 aa15.5■□□□□ 0.07
COL12A1-202ENST00000345356 RCAN3Q9UKA8 241 aa15.5■□□□□ 0.07
COL12A1-202ENST00000345356 CCNB3Q8WWL7 1395 aa15.48■□□□□ 0.07
COL12A1-202ENST00000345356 HSPA5P11021 654 aaKnown RBP15.48■□□□□ 0.07
COL12A1-202ENST00000345356 KIAA2012Q0VF49 1180 aa15.47■□□□□ 0.07
COL12A1-202ENST00000345356 NUDCQ9Y266 331 aa15.47■□□□□ 0.07
COL12A1-202ENST00000345356 PTMSP20962 102 aa15.46■□□□□ 0.07
COL12A1-202ENST00000345356 CC2D1BQ5T0F9 858 aaKnown RBP15.46■□□□□ 0.07
COL12A1-202ENST00000345356 PKNOX2Q96KN3 472 aa15.46■□□□□ 0.07
COL12A1-202ENST00000345356 GOLGA6L6A8MZA4 724 aa15.46■□□□□ 0.06
COL12A1-202ENST00000345356 TNNT3P45378 269 aaPredicted RBP15.45■□□□□ 0.06
COL12A1-202ENST00000345356 RSF1Q96T23 1441 aaPredicted RBP15.45■□□□□ 0.06
COL12A1-202ENST00000345356 TSPY4P0CV99 314 aa15.45■□□□□ 0.06
COL12A1-202ENST00000345356 TSPY10P0CW01 314 aa15.45■□□□□ 0.06
COL12A1-202ENST00000345356 CEP164Q9UPV0 1460 aa15.44■□□□□ 0.06
COL12A1-202ENST00000345356 SLC4A3P48751 1232 aa15.44■□□□□ 0.06
COL12A1-202ENST00000345356 PDE4AP27815 886 aa15.43■□□□□ 0.06
COL12A1-202ENST00000345356 CFAP53Q96M91 514 aa15.43■□□□□ 0.06
COL12A1-202ENST00000345356 RGL3Q3MIN7 710 aa15.43■□□□□ 0.06
COL12A1-202ENST00000345356 NRDCO43847 1150 aa15.42■□□□□ 0.06
COL12A1-202ENST00000345356 DRC7Q8IY82 874 aa15.41■□□□□ 0.06
COL12A1-202ENST00000345356 MS4A1P11836 297 aa15.4■□□□□ 0.06
COL12A1-202ENST00000345356 IL27Q8NEV9 243 aa15.39■□□□□ 0.05
COL12A1-202ENST00000345356 CDCA8Q53HL2 280 aa15.39■□□□□ 0.05
COL12A1-202ENST00000345356 SETD5Q9C0A6 1442 aa15.37■□□□□ 0.05
COL12A1-202ENST00000345356 GOLGA6L4A6NEF3 574 aa15.36■□□□□ 0.05
COL12A1-202ENST00000345356 CHMP4BQ9H444 224 aaKnown RBP15.35■□□□□ 0.05
COL12A1-202ENST00000345356 MFAP1P55081 439 aaKnown RBP15.33■□□□□ 0.04
COL12A1-202ENST00000345356 MAPK8IP3Q9UPT6 1336 aa15.32■□□□□ 0.04
COL12A1-202ENST00000345356 PPP1R15AO75807 674 aaPredicted RBP15.32■□□□□ 0.04
COL12A1-202ENST00000345356 A0A0U1RQG5 324 aaPredicted RBP15.32■□□□□ 0.04
COL12A1-202ENST00000345356 CALD1Q05682 793 aaKnown RBP15.32■□□□□ 0.04
COL12A1-202ENST00000345356 WRNQ14191 1432 aaPredicted RBP eCLIP15.31■□□□□ 0.04
COL12A1-202ENST00000345356 STAG3Q9UJ98 1225 aa15.31■□□□□ 0.04
COL12A1-202ENST00000345356 BRPF3Q9ULD4 1205 aa15.31■□□□□ 0.04
COL12A1-202ENST00000345356 RAB3GAP2Q9H2M9 1393 aa15.31■□□□□ 0.04
COL12A1-202ENST00000345356 DDX11L8A8MPP1 907 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms