RNA–Protein interactions for RNA: ENST00000344204.8

TRIO-202, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIO, Length 11,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-202ENST00000344204 HSP90AA2PQ14568 343 aaPredicted RBP17.98■□□□□ 0.47
TRIO-202ENST00000344204 PTMAP06454 111 aaKnown RBP17.98■□□□□ 0.47
TRIO-202ENST00000344204 PNNQ9H307 717 aaKnown RBP17.96■□□□□ 0.47
TRIO-202ENST00000344204 DNTTIP2Q5QJE6 756 aaKnown RBP17.95■□□□□ 0.46
TRIO-202ENST00000344204 VSIG10Q8N0Z9 540 aa17.95■□□□□ 0.46
TRIO-202ENST00000344204 ARID4BQ4LE39 1312 aaPredicted RBP17.88■□□□□ 0.45
TRIO-202ENST00000344204 PODXL2Q9NZ53 605 aa17.88■□□□□ 0.45
TRIO-202ENST00000344204 TMC1Q8TDI8 760 aa17.88■□□□□ 0.45
TRIO-202ENST00000344204 AMER1Q5JTC6 1135 aaPredicted RBP17.87■□□□□ 0.45
TRIO-202ENST00000344204 MSNP26038 577 aaKnown RBP17.85■□□□□ 0.45
TRIO-202ENST00000344204 B4GALNT3Q6L9W6 998 aa17.85■□□□□ 0.45
TRIO-202ENST00000344204 CHAF1AQ13111 956 aaPredicted RBP17.81■□□□□ 0.44
TRIO-202ENST00000344204 FANCIQ9NVI1 1328 aa17.8■□□□□ 0.44
TRIO-202ENST00000344204 USP35Q9P2H5 1018 aa17.8■□□□□ 0.44
TRIO-202ENST00000344204 IPO9Q96P70 1041 aaKnown RBP17.8■□□□□ 0.44
TRIO-202ENST00000344204 ANO8Q9HCE9 1232 aaPredicted RBP17.79■□□□□ 0.44
TRIO-202ENST00000344204 SALL2Q9Y467 1007 aaPredicted RBP17.75■□□□□ 0.43
TRIO-202ENST00000344204 A0A0U1RQG5 324 aaPredicted RBP17.74■□□□□ 0.43
TRIO-202ENST00000344204 TIMELESSQ9UNS1 1208 aa17.73■□□□□ 0.43
TRIO-202ENST00000344204 ARID3AQ99856 593 aa17.7■□□□□ 0.42
TRIO-202ENST00000344204 CCER2I3L3R5 266 aa17.68■□□□□ 0.42
TRIO-202ENST00000344204 CEP162Q5TB80 1403 aa17.67■□□□□ 0.42
TRIO-202ENST00000344204 HIRIP3Q9BW71 556 aaPredicted RBP17.66■□□□□ 0.42
TRIO-202ENST00000344204 TNNT3P45378 269 aaPredicted RBP17.64■□□□□ 0.41
TRIO-202ENST00000344204 WDR43Q15061 677 aaKnown RBP eCLIP17.63■□□□□ 0.41
TRIO-202ENST00000344204 CLIP1P30622 1438 aa17.62■□□□□ 0.41
TRIO-202ENST00000344204 MYH16Q9H6N6 1097 aa17.62■□□□□ 0.41
TRIO-202ENST00000344204 GOLGA6L3A6NEY3 463 aa17.62■□□□□ 0.41
TRIO-202ENST00000344204 PTMSP20962 102 aa17.6■□□□□ 0.41
TRIO-202ENST00000344204 RGS3P49796 1198 aa17.6■□□□□ 0.41
TRIO-202ENST00000344204 EIF4G2P78344 907 aaKnown RBP eCLIP17.59■□□□□ 0.41
TRIO-202ENST00000344204 TCERG1O14776 1098 aaKnown RBP17.58■□□□□ 0.41
TRIO-202ENST00000344204 HSCBQ8IWL3 235 aa17.58■□□□□ 0.41
TRIO-202ENST00000344204 HSP90AB1P08238 724 aaKnown RBP17.58■□□□□ 0.4
TRIO-202ENST00000344204 GSE1Q14687 1217 aa17.58■□□□□ 0.4
TRIO-202ENST00000344204 UBE2Q2Q8WVN8 375 aa17.57■□□□□ 0.4
TRIO-202ENST00000344204 EEA1Q15075 1411 aa17.55■□□□□ 0.4
TRIO-202ENST00000344204 KIAA2012Q0VF49 1180 aa17.54■□□□□ 0.4
TRIO-202ENST00000344204 GOLGA6L6A8MZA4 724 aa17.53■□□□□ 0.4
TRIO-202ENST00000344204 SCRIBQ14160 1630 aa17.52■□□□□ 0.4
TRIO-202ENST00000344204 GBP4Q96PP9 640 aa17.52■□□□□ 0.39
TRIO-202ENST00000344204 ZCCHC6Q5VYS8 1495 aaKnown RBP17.51■□□□□ 0.39
TRIO-202ENST00000344204 GZF1Q9H116 711 aaPredicted RBP17.51■□□□□ 0.39
TRIO-202ENST00000344204 GOLGA3Q08378 1498 aa17.5■□□□□ 0.39
TRIO-202ENST00000344204 CASC1Q6TDU7 716 aa17.48■□□□□ 0.39
TRIO-202ENST00000344204 NRDCO43847 1150 aa17.47■□□□□ 0.39
TRIO-202ENST00000344204 ZRSR1Q15695 479 aaKnown RBP17.45■□□□□ 0.38
TRIO-202ENST00000344204 SLKQ9H2G2 1235 aaPredicted RBP17.43■□□□□ 0.38
TRIO-202ENST00000344204 IL27Q8NEV9 243 aa17.41■□□□□ 0.38
TRIO-202ENST00000344204 FTSJ3Q8IY81 847 aaKnown RBP17.41■□□□□ 0.38
TRIO-202ENST00000344204 PLCB2Q00722 1185 aa17.4■□□□□ 0.38
TRIO-202ENST00000344204 SPRYD3Q8NCJ5 442 aa17.4■□□□□ 0.38
TRIO-202ENST00000344204 RRP9O43818 475 aaKnown RBP17.38■□□□□ 0.37
TRIO-202ENST00000344204 MAP7D2Q96T17 732 aa17.37■□□□□ 0.37
TRIO-202ENST00000344204 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.37■□□□□ 0.37
TRIO-202ENST00000344204 DDX11L8A8MPP1 907 aa17.35■□□□□ 0.37
TRIO-202ENST00000344204 TPRNQ4KMQ1 711 aa17.35■□□□□ 0.37
TRIO-202ENST00000344204 SENP3-EIF4A1A0A087X0R7 540 aa17.35■□□□□ 0.37
TRIO-202ENST00000344204 DRC7Q8IY82 874 aa17.35■□□□□ 0.37
TRIO-202ENST00000344204 BRPF3Q9ULD4 1205 aa17.35■□□□□ 0.37
TRIO-202ENST00000344204 ZNF771Q7L3S4 317 aaPredicted RBP17.35■□□□□ 0.37
TRIO-202ENST00000344204 FAM43AQ8N2R8 423 aa17.34■□□□□ 0.37
TRIO-202ENST00000344204 MTERF4Q7Z6M4 381 aaKnown RBP17.34■□□□□ 0.37
TRIO-202ENST00000344204 TNIKQ9UKE5 1360 aa17.32■□□□□ 0.36
TRIO-202ENST00000344204 FAM13BQ9NYF5 915 aa17.32■□□□□ 0.36
TRIO-202ENST00000344204 TPM2P07951 284 aa17.32■□□□□ 0.36
TRIO-202ENST00000344204 ZBTB7CA1YPR0 619 aa17.31■□□□□ 0.36
TRIO-202ENST00000344204 SYAP1Q96A49 352 aaPredicted RBP17.3■□□□□ 0.36
TRIO-202ENST00000344204 P3H3Q8IVL6 736 aa17.27■□□□□ 0.36
TRIO-202ENST00000344204 RCAN3Q9UKA8 241 aa17.27■□□□□ 0.36
TRIO-202ENST00000344204 CSPP1Q1MSJ5 1256 aa17.25■□□□□ 0.35
TRIO-202ENST00000344204 APPP05067 770 aa17.24■□□□□ 0.35
TRIO-202ENST00000344204 RB1CC1Q8TDY2 1594 aa17.24■□□□□ 0.35
TRIO-202ENST00000344204 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
TRIO-202ENST00000344204 PHF14O94880 888 aa17.22■□□□□ 0.35
TRIO-202ENST00000344204 NUDCQ9Y266 331 aa17.22■□□□□ 0.35
TRIO-202ENST00000344204 PDE4AP27815 886 aa17.22■□□□□ 0.35
TRIO-202ENST00000344204 SETQ01105 290 aaPredicted RBP17.21■□□□□ 0.35
TRIO-202ENST00000344204 MS4A1P11836 297 aa17.21■□□□□ 0.35
TRIO-202ENST00000344204 GOLGA6L1Q8N7Z2 621 aa17.2■□□□□ 0.34
TRIO-202ENST00000344204 PDE4CQ08493 712 aa17.2■□□□□ 0.34
TRIO-202ENST00000344204 CCNB3Q8WWL7 1395 aa17.2■□□□□ 0.34
TRIO-202ENST00000344204 GOLGA6L4A6NEF3 574 aa17.19■□□□□ 0.34
TRIO-202ENST00000344204 SKOR2Q2VWA4 1001 aaPredicted RBP17.18■□□□□ 0.34
TRIO-202ENST00000344204 FRAT1Q92837 279 aaPredicted RBP17.18■□□□□ 0.34
TRIO-202ENST00000344204 CHMP4BQ9H444 224 aaKnown RBP17.17■□□□□ 0.34
TRIO-202ENST00000344204 MTUS2Q5JR59 1369 aa17.16■□□□□ 0.34
TRIO-202ENST00000344204 CALD1Q05682 793 aaKnown RBP17.15■□□□□ 0.34
TRIO-202ENST00000344204 KDM2AQ9Y2K7 1162 aa17.15■□□□□ 0.34
TRIO-202ENST00000344204 SIN3AQ96ST3 1273 aa17.15■□□□□ 0.34
TRIO-202ENST00000344204 ZBED9Q6R2W3 1325 aa17.15■□□□□ 0.34
TRIO-202ENST00000344204 CHIC2Q9UKJ5 165 aa17.15■□□□□ 0.34
TRIO-202ENST00000344204 CFAP44Q96MT7 982 aa17.15■□□□□ 0.34
TRIO-202ENST00000344204 KCNH8Q96L42 1107 aa17.14■□□□□ 0.33
TRIO-202ENST00000344204 TAF3Q5VWG9 929 aa17.13■□□□□ 0.33
TRIO-202ENST00000344204 KNSTRNQ9Y448 316 aa17.13■□□□□ 0.33
TRIO-202ENST00000344204 NFKBIBQ15653 356 aa17.13■□□□□ 0.33
TRIO-202ENST00000344204 SETD5Q9C0A6 1442 aa17.12■□□□□ 0.33
TRIO-202ENST00000344204 FAM161AQ3B820 660 aa17.12■□□□□ 0.33
TRIO-202ENST00000344204 CALRP27797 417 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms