RNA–Protein interactions for RNA: ENST00000340058.5

RET-201, Transcript of ret proto-oncogene, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RET, Length 4,149 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RET-201ENST00000340058 TSPY10P0CW01 314 aa20.33■□□□□ 0.85
RET-201ENST00000340058 TDRD9Q8NDG6 1382 aaKnown RBP20.3■□□□□ 0.84
RET-201ENST00000340058 CLSPNQ9HAW4 1339 aa20.3■□□□□ 0.84
RET-201ENST00000340058 BCL11AQ9H165 835 aa20.3■□□□□ 0.84
RET-201ENST00000340058 DAXXQ9UER7 740 aaPredicted RBP20.27■□□□□ 0.84
RET-201ENST00000340058 RGL3Q3MIN7 710 aa20.26■□□□□ 0.83
RET-201ENST00000340058 IRX6P78412 446 aaPredicted RBP20.25■□□□□ 0.83
RET-201ENST00000340058 PLEKHD1A6NEE1 506 aa20.22■□□□□ 0.83
RET-201ENST00000340058 CFDP1Q9UEE9 299 aaPredicted RBP20.22■□□□□ 0.83
RET-201ENST00000340058 NPM1P06748 294 aaKnown RBP eCLIP20.2■□□□□ 0.82
RET-201ENST00000340058 ATAD2BQ9ULI0 1458 aa20.18■□□□□ 0.82
RET-201ENST00000340058 CCNB3Q8WWL7 1395 aa20.18■□□□□ 0.82
RET-201ENST00000340058 TOP2AP11388 1531 aaKnown RBP20.18■□□□□ 0.82
RET-201ENST00000340058 MRS2Q9HD23 443 aa20.17■□□□□ 0.82
RET-201ENST00000340058 VPS8Q8N3P4 1428 aa20.16■□□□□ 0.82
RET-201ENST00000340058 RAPGEF2Q9Y4G8 1499 aa20.14■□□□□ 0.82
RET-201ENST00000340058 FOXD1Q16676 465 aa20.13■□□□□ 0.81
RET-201ENST00000340058 EIF4G2P78344 907 aaKnown RBP eCLIP20.13■□□□□ 0.81
RET-201ENST00000340058 TMC1Q8TDI8 760 aa20.1■□□□□ 0.81
RET-201ENST00000340058 ERCC6Q03468 1493 aa20.09■□□□□ 0.81
RET-201ENST00000340058 EIF4G1Q04637 1599 aaKnown RBP20.09■□□□□ 0.81
RET-201ENST00000340058 SMARCA2P51531 1590 aa20.09■□□□□ 0.81
RET-201ENST00000340058 SMARCA4P51532 1647 aa20.07■□□□□ 0.8
RET-201ENST00000340058 STAG3Q9UJ98 1225 aa20.07■□□□□ 0.8
RET-201ENST00000340058 SLC24A1O60721 1099 aa20.06■□□□□ 0.8
RET-201ENST00000340058 CADPSQ9ULU8 1353 aa20.04■□□□□ 0.8
RET-201ENST00000340058 CANXP27824 592 aaKnown RBP20.02■□□□□ 0.8
RET-201ENST00000340058 NPM2Q86SE8 214 aaKnown RBP19.99■□□□□ 0.79
RET-201ENST00000340058 ESF1Q9H501 851 aaKnown RBP19.98■□□□□ 0.79
RET-201ENST00000340058 FHOD3Q2V2M9 1422 aa19.98■□□□□ 0.79
RET-201ENST00000340058 FHAD1B1AJZ9 1412 aa19.97■□□□□ 0.79
RET-201ENST00000340058 MYT1Q01538 1121 aa19.94■□□□□ 0.78
RET-201ENST00000340058 RAB3GAP2Q9H2M9 1393 aa19.93■□□□□ 0.78
RET-201ENST00000340058 CARD11Q9BXL7 1154 aa19.91■□□□□ 0.78
RET-201ENST00000340058 RTL5Q5HYW3 569 aaPredicted RBP19.9■□□□□ 0.78
RET-201ENST00000340058 PLEKHG5O94827 1062 aa19.87■□□□□ 0.77
RET-201ENST00000340058 SETD5Q9C0A6 1442 aa19.86■□□□□ 0.77
RET-201ENST00000340058 PDS5BQ9NTI5 1447 aa19.86■□□□□ 0.77
RET-201ENST00000340058 SUPT16HQ9Y5B9 1047 aaKnown RBP19.86■□□□□ 0.77
RET-201ENST00000340058 DCAF11Q8TEB1 546 aa19.84■□□□□ 0.77
RET-201ENST00000340058 CCDC136Q96JN2 1154 aa19.83■□□□□ 0.76
RET-201ENST00000340058 NEFMP07197 916 aa19.81■□□□□ 0.76
RET-201ENST00000340058 PKD2Q13563 968 aa19.8■□□□□ 0.76
RET-201ENST00000340058 ARHGAP35Q9NRY4 1499 aa19.79■□□□□ 0.76
RET-201ENST00000340058 WDR43Q15061 677 aaKnown RBP eCLIP19.79■□□□□ 0.76
RET-201ENST00000340058 IGF1RP08069 1367 aa19.78■□□□□ 0.76
RET-201ENST00000340058 HSPA5P11021 654 aaKnown RBP19.77■□□□□ 0.76
RET-201ENST00000340058 FANCD2Q9BXW9 1451 aa19.77■□□□□ 0.76
RET-201ENST00000340058 RAD54L2Q9Y4B4 1467 aa19.77■□□□□ 0.76
RET-201ENST00000340058 MPHOSPH9Q99550 1183 aa19.75■□□□□ 0.75
RET-201ENST00000340058 TNNT2P45379 298 aaPredicted RBP19.74■□□□□ 0.75
RET-201ENST00000340058 DNAJC5BQ9UF47 199 aa19.74■□□□□ 0.75
RET-201ENST00000340058 CC2D1BQ5T0F9 858 aaKnown RBP19.73■□□□□ 0.75
RET-201ENST00000340058 HNRNPMP52272 730 aaKnown RBP eCLIP19.72■□□□□ 0.75
RET-201ENST00000340058 JPH4Q96JJ6 628 aa19.72■□□□□ 0.75
RET-201ENST00000340058 PPP1R15AO75807 674 aaPredicted RBP19.7■□□□□ 0.74
RET-201ENST00000340058 L3MBTL2Q969R5 705 aa19.7■□□□□ 0.74
RET-201ENST00000340058 NEUROD2Q15784 382 aa19.7■□□□□ 0.74
RET-201ENST00000340058 FMN1Q68DA7 1419 aa19.69■□□□□ 0.74
RET-201ENST00000340058 ANP32AP39687 249 aaKnown RBP19.68■□□□□ 0.74
RET-201ENST00000340058 ZBTB47Q9UFB7 747 aaPredicted RBP19.68■□□□□ 0.74
RET-201ENST00000340058 DHX57Q6P158 1386 aaKnown RBP19.68■□□□□ 0.74
RET-201ENST00000340058 FGD5Q6ZNL6 1462 aa19.67■□□□□ 0.74
RET-201ENST00000340058 MLECQ14165 292 aa19.66■□□□□ 0.74
RET-201ENST00000340058 GGT6Q6P531 493 aa19.66■□□□□ 0.74
RET-201ENST00000340058 SAFB2Q14151 953 aaKnown RBP eCLIP19.65■□□□□ 0.74
RET-201ENST00000340058 PPM1GO15355 546 aaPredicted RBP19.65■□□□□ 0.74
RET-201ENST00000340058 KNSTRNQ9Y448 316 aa19.63■□□□□ 0.73
RET-201ENST00000340058 NUP155O75694 1391 aa19.63■□□□□ 0.73
RET-201ENST00000340058 ARID4BQ4LE39 1312 aaPredicted RBP19.63■□□□□ 0.73
RET-201ENST00000340058 ZNF644Q9H582 1327 aaPredicted RBP19.61■□□□□ 0.73
RET-201ENST00000340058 NCAPD3P42695 1498 aa19.59■□□□□ 0.73
RET-201ENST00000340058 NESP48681 1621 aa19.59■□□□□ 0.73
RET-201ENST00000340058 B4GALNT3Q6L9W6 998 aa19.58■□□□□ 0.73
RET-201ENST00000340058 NBR1Q14596 966 aa19.57■□□□□ 0.72
RET-201ENST00000340058 SYNJ1O43426 1573 aa19.57■□□□□ 0.72
RET-201ENST00000340058 TIMELESSQ9UNS1 1208 aa19.57■□□□□ 0.72
RET-201ENST00000340058 CARMIL2Q6F5E8 1435 aa19.56■□□□□ 0.72
RET-201ENST00000340058 AQRO60306 1485 aaKnown RBP eCLIP19.55■□□□□ 0.72
RET-201ENST00000340058 ZBTB7CA1YPR0 619 aa19.55■□□□□ 0.72
RET-201ENST00000340058 PHLDB1Q86UU1 1377 aa19.53■□□□□ 0.72
RET-201ENST00000340058 C14orf37Q86TY3 774 aa19.52■□□□□ 0.72
RET-201ENST00000340058 ARAP1Q96P48 1450 aa19.51■□□□□ 0.71
RET-201ENST00000340058 NUTM2DQ5VT03 806 aaPredicted RBP19.51■□□□□ 0.71
RET-201ENST00000340058 KIF21BO75037 1637 aa19.51■□□□□ 0.71
RET-201ENST00000340058 STK26Q9P289 416 aa19.49■□□□□ 0.71
RET-201ENST00000340058 KIF3BO15066 747 aa19.49■□□□□ 0.71
RET-201ENST00000340058 EFCAB2Q5VUJ9 269 aa19.48■□□□□ 0.71
RET-201ENST00000340058 GAPVD1Q14C86 1478 aa19.48■□□□□ 0.71
RET-201ENST00000340058 POGKQ9P215 609 aa19.47■□□□□ 0.71
RET-201ENST00000340058 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.44■□□□□ 0.7
RET-201ENST00000340058 SOX12O15370 315 aa19.44■□□□□ 0.7
RET-201ENST00000340058 ANKRD30AQ9BXX3 1397 aa19.44■□□□□ 0.7
RET-201ENST00000340058 TMF1P82094 1093 aa19.43■□□□□ 0.7
RET-201ENST00000340058 CDCA8Q53HL2 280 aa19.41■□□□□ 0.7
RET-201ENST00000340058 CFTRP13569 1480 aa19.41■□□□□ 0.7
RET-201ENST00000340058 CCER2I3L3R5 266 aa19.4■□□□□ 0.7
RET-201ENST00000340058 LAS1LQ9Y4W2 734 aaKnown RBP19.4■□□□□ 0.7
RET-201ENST00000340058 U2SURPO15042 1029 aaKnown RBP19.4■□□□□ 0.7
RET-201ENST00000340058 FRAT1Q92837 279 aaPredicted RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms