RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 PCGF6Q9BYE7 350 aa17.19■□□□□ 0.34
RTN3-201ENST00000338850 LOC105371045A0A1W2PR82 267 aa17.18■□□□□ 0.34
RTN3-201ENST00000338850 PRG4Q92954 1404 aaPredicted RBP17.14■□□□□ 0.33
RTN3-201ENST00000338850 IGF1RP08069 1367 aa17.14■□□□□ 0.33
RTN3-201ENST00000338850 KIF27Q86VH2 1401 aa17.13■□□□□ 0.33
RTN3-201ENST00000338850 JPH4Q96JJ6 628 aa17.13■□□□□ 0.33
RTN3-201ENST00000338850 RUSC2Q8N2Y8 1516 aa17.12■□□□□ 0.33
RTN3-201ENST00000338850 CUL7Q14999 1698 aa17.07■□□□□ 0.32
RTN3-201ENST00000338850 KIAA0586Q9BVV6 1533 aa17.06■□□□□ 0.32
RTN3-201ENST00000338850 EEA1Q15075 1411 aa17.04■□□□□ 0.32
RTN3-201ENST00000338850 CARMIL1Q5VZK9 1371 aa17.02■□□□□ 0.31
RTN3-201ENST00000338850 ZEB1P37275 1124 aaPredicted RBP17■□□□□ 0.31
RTN3-201ENST00000338850 ADCY10Q96PN6 1610 aa16.92■□□□□ 0.3
RTN3-201ENST00000338850 NPM1P06748 294 aaKnown RBP eCLIP16.9■□□□□ 0.3
RTN3-201ENST00000338850 KIF13AQ9H1H9 1805 aa16.9■□□□□ 0.3
RTN3-201ENST00000338850 MAPKBP1O60336 1514 aa16.9■□□□□ 0.3
RTN3-201ENST00000338850 IQGAP2Q13576 1575 aa16.89■□□□□ 0.29
RTN3-201ENST00000338850 ABCC10Q5T3U5 1492 aa16.88■□□□□ 0.29
RTN3-201ENST00000338850 PTPRGP23470 1445 aa16.87■□□□□ 0.29
RTN3-201ENST00000338850 CARMIL2Q6F5E8 1435 aa16.87■□□□□ 0.29
RTN3-201ENST00000338850 RAPGEF2Q9Y4G8 1499 aa16.86■□□□□ 0.29
RTN3-201ENST00000338850 TNIKQ9UKE5 1360 aa16.86■□□□□ 0.29
RTN3-201ENST00000338850 FAM69CQ0P6D2 419 aa16.85■□□□□ 0.29
RTN3-201ENST00000338850 DIP2BQ9P265 1576 aa16.84■□□□□ 0.29
RTN3-201ENST00000338850 DISP1Q96F81 1524 aa16.82■□□□□ 0.28
RTN3-201ENST00000338850 TTBK1Q5TCY1 1321 aaPredicted RBP16.81■□□□□ 0.28
RTN3-201ENST00000338850 UGGT2Q9NYU1 1516 aa16.8■□□□□ 0.28
RTN3-201ENST00000338850 KIF21BO75037 1637 aa16.79■□□□□ 0.28
RTN3-201ENST00000338850 ABCC2Q92887 1545 aa16.78■□□□□ 0.28
RTN3-201ENST00000338850 UHRF1BP1LA0JNW5 1464 aa16.77■□□□□ 0.28
RTN3-201ENST00000338850 UACAQ9BZF9 1416 aa16.75■□□□□ 0.27
RTN3-201ENST00000338850 FAM9AQ8IZU1 332 aaPredicted RBP16.74■□□□□ 0.27
RTN3-201ENST00000338850 KIAA0556O60303 1618 aa16.74■□□□□ 0.27
RTN3-201ENST00000338850 GOLGA3Q08378 1498 aa16.73■□□□□ 0.27
RTN3-201ENST00000338850 PRXQ9BXM0 1461 aa16.73■□□□□ 0.27
RTN3-201ENST00000338850 ASXL2Q76L83 1435 aa16.72■□□□□ 0.27
RTN3-201ENST00000338850 PLB1Q6P1J6 1458 aa16.71■□□□□ 0.27
RTN3-201ENST00000338850 CEP162Q5TB80 1403 aa16.7■□□□□ 0.26
RTN3-201ENST00000338850 PPARGC1BQ86YN6 1023 aaKnown RBP16.69■□□□□ 0.26
RTN3-201ENST00000338850 KDM5BQ9UGL1 1544 aa16.69■□□□□ 0.26
RTN3-201ENST00000338850 CTTNBP2Q8WZ74 1663 aa16.68■□□□□ 0.26
RTN3-201ENST00000338850 GLI2P10070 1586 aa16.66■□□□□ 0.26
RTN3-201ENST00000338850 TSPOAP1O95153 1857 aa16.65■□□□□ 0.26
RTN3-201ENST00000338850 KDM6BO15054 1643 aa16.65■□□□□ 0.26
RTN3-201ENST00000338850 ZCCHC11Q5TAX3 1644 aaKnown RBP16.63■□□□□ 0.25
RTN3-201ENST00000338850 EPRSP07814 1512 aaKnown RBP16.62■□□□□ 0.25
RTN3-201ENST00000338850 PPRC1Q5VV67 1664 aaKnown RBP16.6■□□□□ 0.25
RTN3-201ENST00000338850 CSRNP3Q8WYN3 585 aa16.6■□□□□ 0.25
RTN3-201ENST00000338850 ABCA8O94911 1581 aa16.59■□□□□ 0.25
RTN3-201ENST00000338850 WDR7Q9Y4E6 1490 aa16.57■□□□□ 0.24
RTN3-201ENST00000338850 MAP3K4Q9Y6R4 1608 aa16.56■□□□□ 0.24
RTN3-201ENST00000338850 COL17A1Q9UMD9 1497 aaPredicted RBP16.52■□□□□ 0.23
RTN3-201ENST00000338850 TEX14Q8IWB6 1497 aa16.51■□□□□ 0.23
RTN3-201ENST00000338850 P3H3Q8IVL6 736 aa16.5■□□□□ 0.23
RTN3-201ENST00000338850 KDM4FA0A1W2PPD8 638 aa16.49■□□□□ 0.23
RTN3-201ENST00000338850 SAMD9Q5K651 1589 aa16.49■□□□□ 0.23
RTN3-201ENST00000338850 KCNH8Q96L42 1107 aa16.46■□□□□ 0.23
RTN3-201ENST00000338850 ATP10BO94823 1461 aa16.45■□□□□ 0.22
RTN3-201ENST00000338850 MAGI3Q5TCQ9 1506 aa16.45■□□□□ 0.22
RTN3-201ENST00000338850 CD109Q6YHK3 1445 aa16.45■□□□□ 0.22
RTN3-201ENST00000338850 VPS8Q8N3P4 1428 aa16.44■□□□□ 0.22
RTN3-201ENST00000338850 CFAP43Q8NDM7 1665 aa16.43■□□□□ 0.22
RTN3-201ENST00000338850 ARID3CA6NKF2 412 aa16.43■□□□□ 0.22
RTN3-201ENST00000338850 CLIP1P30622 1438 aa16.4■□□□□ 0.22
RTN3-201ENST00000338850 RAPGEF6Q8TEU7 1601 aa16.4■□□□□ 0.22
RTN3-201ENST00000338850 FHOD3Q2V2M9 1422 aa16.39■□□□□ 0.21
RTN3-201ENST00000338850 RANGAP1P46060 587 aaPredicted RBP16.38■□□□□ 0.21
RTN3-201ENST00000338850 ADGRL1O94910 1474 aa16.36■□□□□ 0.21
RTN3-201ENST00000338850 NUP153P49790 1475 aaKnown RBP16.36■□□□□ 0.21
RTN3-201ENST00000338850 EFCAB5A4FU69 1503 aa16.34■□□□□ 0.21
RTN3-201ENST00000338850 ABCA9Q8IUA7 1624 aa16.34■□□□□ 0.21
RTN3-201ENST00000338850 UBTFP17480 764 aaKnown RBP16.32■□□□□ 0.2
RTN3-201ENST00000338850 ARAP3Q8WWN8 1544 aa16.32■□□□□ 0.2
RTN3-201ENST00000338850 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
RTN3-201ENST00000338850 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
RTN3-201ENST00000338850 EHMT2Q96KQ7 1210 aa16.3■□□□□ 0.2
RTN3-201ENST00000338850 PHLDB1Q86UU1 1377 aa16.28■□□□□ 0.2
RTN3-201ENST00000338850 CCER1Q8TC90 406 aaPredicted RBP16.26■□□□□ 0.19
RTN3-201ENST00000338850 NEO1Q92859 1461 aa16.26■□□□□ 0.19
RTN3-201ENST00000338850 PLEKHD1A6NEE1 506 aa16.25■□□□□ 0.19
RTN3-201ENST00000338850 CDK13Q14004 1512 aaKnown RBP16.21■□□□□ 0.19
RTN3-201ENST00000338850 RAPGEF3O95398 923 aa16.21■□□□□ 0.19
RTN3-201ENST00000338850 ARHGAP35Q9NRY4 1499 aa16.21■□□□□ 0.19
RTN3-201ENST00000338850 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.19■□□□□ 0.181e-77■■□□□ 12.1
RTN3-201ENST00000338850 FRMPD1Q5SYB0 1578 aa16.19■□□□□ 0.18
RTN3-201ENST00000338850 MAP3K1Q13233 1512 aa16.19■□□□□ 0.18
RTN3-201ENST00000338850 FMN1Q68DA7 1419 aa16.19■□□□□ 0.18
RTN3-201ENST00000338850 TTC37Q6PGP7 1564 aa16.17■□□□□ 0.18
RTN3-201ENST00000338850 CLSPNQ9HAW4 1339 aa16.17■□□□□ 0.18
RTN3-201ENST00000338850 FANCAO15360 1455 aa16.16■□□□□ 0.18
RTN3-201ENST00000338850 AKNAQ7Z591 1439 aa16.15■□□□□ 0.18
RTN3-201ENST00000338850 HECW1Q76N89 1606 aa16.15■□□□□ 0.18
RTN3-201ENST00000338850 DENND4BO75064 1496 aaPredicted RBP16.14■□□□□ 0.17
RTN3-201ENST00000338850 ATP1B4Q9UN42 357 aaPredicted RBP16.13■□□□□ 0.17
RTN3-201ENST00000338850 CFAP74Q9C0B2 1584 aa16.13■□□□□ 0.17
RTN3-201ENST00000338850 RRBP1Q9P2E9 1410 aaKnown RBP16.11■□□□□ 0.17
RTN3-201ENST00000338850 HECW2Q9P2P5 1572 aa16.11■□□□□ 0.17
RTN3-201ENST00000338850 RICTORQ6R327 1708 aa16.11■□□□□ 0.17
RTN3-201ENST00000338850 PLCH2O75038 1416 aa16.1■□□□□ 0.17
RTN3-201ENST00000338850 ARHGEF40Q8TER5 1519 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms