RNA–Protein interactions for RNA: ENST00000336596.6

EPHA3-201, Transcript of EPH receptor A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EPHA3, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA3-201ENST00000336596 NPM2Q86SE8 214 aaKnown RBP10.11□□□□□ -0.79
EPHA3-201ENST00000336596 TRHP20396 242 aaPredicted RBP10.11□□□□□ -0.79
EPHA3-201ENST00000336596 ZNF326Q5BKZ1 582 aaKnown RBP10.1□□□□□ -0.79
EPHA3-201ENST00000336596 CLSPNQ9HAW4 1339 aa10.1□□□□□ -0.79
EPHA3-201ENST00000336596 PLPPR3Q6T4P5 718 aa10.09□□□□□ -0.79
EPHA3-201ENST00000336596 C14orf37Q86TY3 774 aa10.08□□□□□ -0.8
EPHA3-201ENST00000336596 CHIC2Q9UKJ5 165 aa10.08□□□□□ -0.8
EPHA3-201ENST00000336596 CNGB1Q14028 1251 aaPredicted RBP10.07□□□□□ -0.8
EPHA3-201ENST00000336596 HAP1P54257 671 aaPredicted RBP10.07□□□□□ -0.8
EPHA3-201ENST00000336596 CANXP27824 592 aaKnown RBP10.06□□□□□ -0.8
EPHA3-201ENST00000336596 HMGXB3Q12766 1538 aa10.04□□□□□ -0.8
EPHA3-201ENST00000336596 CARMIL2Q6F5E8 1435 aa10.04□□□□□ -0.8
EPHA3-201ENST00000336596 FHAD1B1AJZ9 1412 aa10.03□□□□□ -0.8
EPHA3-201ENST00000336596 ZNF316A6NFI3 1004 aaPredicted RBP10.03□□□□□ -0.8
EPHA3-201ENST00000336596 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.02□□□□□ -0.8
EPHA3-201ENST00000336596 KANK1Q14678 1352 aa10.02□□□□□ -0.81
EPHA3-201ENST00000336596 ANP32CO43423 234 aa10.02□□□□□ -0.81
EPHA3-201ENST00000336596 UNC13AQ9UPW8 1703 aa10.01□□□□□ -0.81
EPHA3-201ENST00000336596 SCAF1Q9H7N4 1312 aaKnown RBP10.01□□□□□ -0.81
EPHA3-201ENST00000336596 CFDP1Q9UEE9 299 aaPredicted RBP10.01□□□□□ -0.81
EPHA3-201ENST00000336596 FGD5Q6ZNL6 1462 aa10□□□□□ -0.81
EPHA3-201ENST00000336596 RAPGEF2Q9Y4G8 1499 aa9.99□□□□□ -0.81
EPHA3-201ENST00000336596 NESP48681 1621 aa9.99□□□□□ -0.81
EPHA3-201ENST00000336596 CFTRP13569 1480 aa9.98□□□□□ -0.81
EPHA3-201ENST00000336596 DNAJC5BQ9UF47 199 aa9.97□□□□□ -0.81
EPHA3-201ENST00000336596 CDCA8Q53HL2 280 aa9.96□□□□□ -0.81
EPHA3-201ENST00000336596 AEBP2Q6ZN18 517 aaPredicted RBP9.96□□□□□ -0.81
EPHA3-201ENST00000336596 RRP7BPQ9NSQ0 103 aa9.96□□□□□ -0.82
EPHA3-201ENST00000336596 TONSLQ96HA7 1378 aa9.96□□□□□ -0.82
EPHA3-201ENST00000336596 RAD54L2Q9Y4B4 1467 aa9.95□□□□□ -0.82
EPHA3-201ENST00000336596 GAPVD1Q14C86 1478 aa9.95□□□□□ -0.82
EPHA3-201ENST00000336596 JPH4Q96JJ6 628 aa9.94□□□□□ -0.82
EPHA3-201ENST00000336596 CCNB3Q8WWL7 1395 aa9.94□□□□□ -0.82
EPHA3-201ENST00000336596 FMN1Q68DA7 1419 aa9.93□□□□□ -0.82
EPHA3-201ENST00000336596 MRC2Q9UBG0 1479 aa9.92□□□□□ -0.82
EPHA3-201ENST00000336596 RUSC2Q8N2Y8 1516 aa9.92□□□□□ -0.82
EPHA3-201ENST00000336596 EIF4G2P78344 907 aaKnown RBP eCLIP9.92□□□□□ -0.82
EPHA3-201ENST00000336596 VPS8Q8N3P4 1428 aa9.91□□□□□ -0.82
EPHA3-201ENST00000336596 OSCARQ8IYS5 282 aa9.9□□□□□ -0.82
EPHA3-201ENST00000336596 DIEXFQ68CQ4 756 aaKnown RBP9.9□□□□□ -0.82
EPHA3-201ENST00000336596 AQRO60306 1485 aaKnown RBP eCLIP9.89□□□□□ -0.83
EPHA3-201ENST00000336596 FOXD1Q16676 465 aa9.88□□□□□ -0.83
EPHA3-201ENST00000336596 FHOD3Q2V2M9 1422 aa9.88□□□□□ -0.83
EPHA3-201ENST00000336596 IGF1RP08069 1367 aa9.88□□□□□ -0.83
EPHA3-201ENST00000336596 A0A0G2JS52 829 aa9.87□□□□□ -0.83
EPHA3-201ENST00000336596 EIF5BO60841 1220 aaKnown RBP9.87□□□□□ -0.83
EPHA3-201ENST00000336596 LAMC3Q9Y6N6 1575 aa9.86□□□□□ -0.83
EPHA3-201ENST00000336596 TOPBP1Q92547 1522 aa9.86□□□□□ -0.83
EPHA3-201ENST00000336596 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.85□□□□□ -0.83
EPHA3-201ENST00000336596 CFAP53Q96M91 514 aa9.85□□□□□ -0.83
EPHA3-201ENST00000336596 GRIN2BQ13224 1484 aa9.85□□□□□ -0.83
EPHA3-201ENST00000336596 IFT140Q96RY7 1462 aa9.84□□□□□ -0.83
EPHA3-201ENST00000336596 PEG3Q9GZU2 1588 aa9.84□□□□□ -0.83
EPHA3-201ENST00000336596 KDM2AQ9Y2K7 1162 aa9.84□□□□□ -0.83
EPHA3-201ENST00000336596 ARHGAP35Q9NRY4 1499 aa9.83□□□□□ -0.84
EPHA3-201ENST00000336596 SYNJ1O43426 1573 aa9.83□□□□□ -0.84
EPHA3-201ENST00000336596 PTPRGP23470 1445 aa9.83□□□□□ -0.84
EPHA3-201ENST00000336596 PNNQ9H307 717 aaKnown RBP9.83□□□□□ -0.84
EPHA3-201ENST00000336596 WDR43Q15061 677 aaKnown RBP eCLIP9.83□□□□□ -0.84
EPHA3-201ENST00000336596 KANK4Q5T7N3 995 aaPredicted RBP9.82□□□□□ -0.84
EPHA3-201ENST00000336596 CYB5RLQ6IPT4 315 aa9.82□□□□□ -0.84
EPHA3-201ENST00000336596 MYH16Q9H6N6 1097 aa9.82□□□□□ -0.84
EPHA3-201ENST00000336596 POLA1P09884 1462 aaPredicted RBP9.81□□□□□ -0.84
EPHA3-201ENST00000336596 DNMBPQ6XZF7 1577 aa9.81□□□□□ -0.84
EPHA3-201ENST00000336596 EFCAB2Q5VUJ9 269 aa9.81□□□□□ -0.84
EPHA3-201ENST00000336596 CUX1P39880 1505 aa9.81□□□□□ -0.84
EPHA3-201ENST00000336596 ZBTB7CA1YPR0 619 aa9.81□□□□□ -0.84
EPHA3-201ENST00000336596 TOP2BQ02880 1626 aa9.8□□□□□ -0.84
EPHA3-201ENST00000336596 POGKQ9P215 609 aa9.8□□□□□ -0.84
EPHA3-201ENST00000336596 NPHP1O15259 732 aa9.79□□□□□ -0.84
EPHA3-201ENST00000336596 MYT1Q01538 1121 aa9.79□□□□□ -0.84
EPHA3-201ENST00000336596 EID1Q9Y6B2 187 aa9.79□□□□□ -0.84
EPHA3-201ENST00000336596 RTL5Q5HYW3 569 aaPredicted RBP9.78□□□□□ -0.84
EPHA3-201ENST00000336596 RGL3Q3MIN7 710 aa9.78□□□□□ -0.84
EPHA3-201ENST00000336596 CCDC18Q5T9S5 1454 aa9.77□□□□□ -0.84
EPHA3-201ENST00000336596 CHMP4AQ9BY43 222 aa9.77□□□□□ -0.85
EPHA3-201ENST00000336596 TMX4Q9H1E5 349 aaPredicted RBP9.77□□□□□ -0.85
EPHA3-201ENST00000336596 RSPH4AQ5TD94 716 aa9.76□□□□□ -0.85
EPHA3-201ENST00000336596 DCAF8L1A6NGE4 600 aa9.76□□□□□ -0.85
EPHA3-201ENST00000336596 MLECQ14165 292 aa9.76□□□□□ -0.85
EPHA3-201ENST00000336596 SENP3Q9H4L4 574 aaPredicted RBP9.76□□□□□ -0.85
EPHA3-201ENST00000336596 CHMP4BQ9H444 224 aaKnown RBP9.75□□□□□ -0.85
EPHA3-201ENST00000336596 UPF2Q9HAU5 1272 aaKnown RBP9.75□□□□□ -0.85
EPHA3-201ENST00000336596 NUDCQ9Y266 331 aa9.74□□□□□ -0.85
EPHA3-201ENST00000336596 SNAPC4Q5SXM2 1469 aa9.74□□□□□ -0.85
EPHA3-201ENST00000336596 CDK11BP21127 795 aaKnown RBP9.74□□□□□ -0.85
EPHA3-201ENST00000336596 GGT6Q6P531 493 aa9.73□□□□□ -0.85
EPHA3-201ENST00000336596 HNRNPMP52272 730 aaKnown RBP eCLIP9.71□□□□□ -0.85
EPHA3-201ENST00000336596 ERICH3Q5RHP9 1530 aa9.7□□□□□ -0.86
EPHA3-201ENST00000336596 ANKRD30AQ9BXX3 1397 aa9.7□□□□□ -0.86
EPHA3-201ENST00000336596 LMOD2Q6P5Q4 547 aa9.7□□□□□ -0.86
EPHA3-201ENST00000336596 KIF21BO75037 1637 aa9.7□□□□□ -0.86
EPHA3-201ENST00000336596 ABCA10Q8WWZ4 1543 aa9.69□□□□□ -0.86
EPHA3-201ENST00000336596 SPAG9O60271 1321 aaKnown RBP9.69□□□□□ -0.86
EPHA3-201ENST00000336596 PRG4Q92954 1404 aaPredicted RBP9.69□□□□□ -0.86
EPHA3-201ENST00000336596 PRDM2Q13029 1718 aa9.69□□□□□ -0.86
EPHA3-201ENST00000336596 SETD5Q9C0A6 1442 aa9.69□□□□□ -0.86
EPHA3-201ENST00000336596 HMGB2P26583 209 aaKnown RBP9.68□□□□□ -0.86
EPHA3-201ENST00000336596 TMC1Q8TDI8 760 aa9.68□□□□□ -0.86
EPHA3-201ENST00000336596 DDX10Q13206 875 aaKnown RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms