RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 MRS2Q9HD23 443 aa7.16□□□□□ -1.26
PTPRB-202ENST00000334414 ZCCHC6Q5VYS8 1495 aaKnown RBP7.16□□□□□ -1.26
PTPRB-202ENST00000334414 GOLGA3Q08378 1498 aa7.16□□□□□ -1.26
PTPRB-202ENST00000334414 RSF1Q96T23 1441 aaPredicted RBP7.15□□□□□ -1.27
PTPRB-202ENST00000334414 FAM9BQ8IZU0 186 aa7.14□□□□□ -1.27
PTPRB-202ENST00000334414 CDCA8Q53HL2 280 aa7.14□□□□□ -1.27
PTPRB-202ENST00000334414 SETQ01105 290 aaPredicted RBP7.13□□□□□ -1.27
PTPRB-202ENST00000334414 SYAP1Q96A49 352 aaPredicted RBP7.13□□□□□ -1.27
PTPRB-202ENST00000334414 SLC24A1O60721 1099 aa7.12□□□□□ -1.27
PTPRB-202ENST00000334414 LAS1LQ9Y4W2 734 aaKnown RBP7.12□□□□□ -1.27
PTPRB-202ENST00000334414 CSRNP3Q8WYN3 585 aa7.12□□□□□ -1.27
PTPRB-202ENST00000334414 TNNT3P45378 269 aaPredicted RBP7.11□□□□□ -1.27
PTPRB-202ENST00000334414 EIF4G2P78344 907 aaKnown RBP eCLIP7.11□□□□□ -1.27
PTPRB-202ENST00000334414 HSCBQ8IWL3 235 aa7.11□□□□□ -1.27
PTPRB-202ENST00000334414 ARXQ96QS3 562 aa7.11□□□□□ -1.27
PTPRB-202ENST00000334414 DEKP35659 375 aaKnown RBP7.11□□□□□ -1.27
PTPRB-202ENST00000334414 KIAA2012Q0VF49 1180 aa7.11□□□□□ -1.27
PTPRB-202ENST00000334414 CLIP1P30622 1438 aa7.11□□□□□ -1.27
PTPRB-202ENST00000334414 CALRP27797 417 aaKnown RBP7.1□□□□□ -1.27
PTPRB-202ENST00000334414 GBP4Q96PP9 640 aa7.1□□□□□ -1.27
PTPRB-202ENST00000334414 TIMELESSQ9UNS1 1208 aa7.1□□□□□ -1.27
PTPRB-202ENST00000334414 A0A0U1RQG5 324 aaPredicted RBP7.09□□□□□ -1.27
PTPRB-202ENST00000334414 GOLGA6L1Q8N7Z2 621 aa7.09□□□□□ -1.27
PTPRB-202ENST00000334414 DDX10Q13206 875 aaKnown RBP7.09□□□□□ -1.27
PTPRB-202ENST00000334414 CFAP53Q96M91 514 aa7.09□□□□□ -1.27
PTPRB-202ENST00000334414 PNNQ9H307 717 aaKnown RBP7.09□□□□□ -1.27
PTPRB-202ENST00000334414 HTATSF1O43719 755 aaKnown RBP7.09□□□□□ -1.28
PTPRB-202ENST00000334414 SUPT16HQ9Y5B9 1047 aaKnown RBP7.09□□□□□ -1.28
PTPRB-202ENST00000334414 MCCP23508 829 aa7.08□□□□□ -1.28
PTPRB-202ENST00000334414 CCER2I3L3R5 266 aa7.08□□□□□ -1.28
PTPRB-202ENST00000334414 PHF14O94880 888 aa7.08□□□□□ -1.28
PTPRB-202ENST00000334414 CEP164Q9UPV0 1460 aa7.08□□□□□ -1.28
PTPRB-202ENST00000334414 FTSJ3Q8IY81 847 aaKnown RBP7.07□□□□□ -1.28
PTPRB-202ENST00000334414 HSP90AB1P08238 724 aaKnown RBP7.07□□□□□ -1.28
PTPRB-202ENST00000334414 GOLGA6L3A6NEY3 463 aa7.07□□□□□ -1.28
PTPRB-202ENST00000334414 MTERF4Q7Z6M4 381 aaKnown RBP7.07□□□□□ -1.28
PTPRB-202ENST00000334414 MIER1Q8N108 512 aa7.07□□□□□ -1.28
PTPRB-202ENST00000334414 CSPP1Q1MSJ5 1256 aa7.06□□□□□ -1.28
PTPRB-202ENST00000334414 HAP1P54257 671 aaPredicted RBP7.06□□□□□ -1.28
PTPRB-202ENST00000334414 SCRIBQ14160 1630 aa7.06□□□□□ -1.28
PTPRB-202ENST00000334414 HSP90AA2PQ14568 343 aaPredicted RBP7.05□□□□□ -1.28
PTPRB-202ENST00000334414 CEP162Q5TB80 1403 aa7.05□□□□□ -1.28
PTPRB-202ENST00000334414 TPM4P67936 248 aa7.04□□□□□ -1.28
PTPRB-202ENST00000334414 MTUS2Q5JR59 1369 aa7.04□□□□□ -1.28
PTPRB-202ENST00000334414 GOLGA6L4A6NEF3 574 aa7.03□□□□□ -1.28
PTPRB-202ENST00000334414 DDX11L8A8MPP1 907 aa7.03□□□□□ -1.28
PTPRB-202ENST00000334414 TCERG1O14776 1098 aaKnown RBP7.03□□□□□ -1.28
PTPRB-202ENST00000334414 PHLDB1Q86UU1 1377 aa7.03□□□□□ -1.28
PTPRB-202ENST00000334414 GPS2Q13227 327 aa7.02□□□□□ -1.29
PTPRB-202ENST00000334414 SKOR2Q2VWA4 1001 aaPredicted RBP7.02□□□□□ -1.29
PTPRB-202ENST00000334414 DRC7Q8IY82 874 aa7.02□□□□□ -1.29
PTPRB-202ENST00000334414 CCDC34Q96HJ3 373 aa7.02□□□□□ -1.29
PTPRB-202ENST00000334414 KNSTRNQ9Y448 316 aa7.02□□□□□ -1.29
PTPRB-202ENST00000334414 NOM1Q5C9Z4 860 aaKnown RBP7.01□□□□□ -1.29
PTPRB-202ENST00000334414 RB1CC1Q8TDY2 1594 aa7.01□□□□□ -1.29
PTPRB-202ENST00000334414 BAZ1AQ9NRL2 1556 aaPredicted RBP7.01□□□□□ -1.29
PTPRB-202ENST00000334414 FHAD1B1AJZ9 1412 aa7□□□□□ -1.29
PTPRB-202ENST00000334414 IPO9Q96P70 1041 aaKnown RBP7□□□□□ -1.29
PTPRB-202ENST00000334414 RBM19Q9Y4C8 960 aaKnown RBP7□□□□□ -1.29
PTPRB-202ENST00000334414 TNIKQ9UKE5 1360 aa7□□□□□ -1.29
PTPRB-202ENST00000334414 MAP7D2Q96T17 732 aa7□□□□□ -1.29
PTPRB-202ENST00000334414 RTN4Q9NQC3 1192 aaKnown RBP6.99□□□□□ -1.29
PTPRB-202ENST00000334414 ESF1Q9H501 851 aaKnown RBP6.99□□□□□ -1.29
PTPRB-202ENST00000334414 MAPK8IP3Q9UPT6 1336 aa6.99□□□□□ -1.29
PTPRB-202ENST00000334414 TEX35Q5T0J7 233 aa6.98□□□□□ -1.29
PTPRB-202ENST00000334414 NUDCQ9Y266 331 aa6.98□□□□□ -1.29
PTPRB-202ENST00000334414 CHMP4CQ96CF2 233 aa6.98□□□□□ -1.29
PTPRB-202ENST00000334414 ROCK2O75116 1388 aaKnown RBP6.97□□□□□ -1.29
PTPRB-202ENST00000334414 NOC3LQ8WTT2 800 aaKnown RBP6.97□□□□□ -1.29
PTPRB-202ENST00000334414 EIF3AQ14152 1382 aaKnown RBP6.96□□□□□ -1.29
PTPRB-202ENST00000334414 CCDC70Q6NSX1 233 aa6.96□□□□□ -1.29
PTPRB-202ENST00000334414 TAF3Q5VWG9 929 aa6.96□□□□□ -1.29
PTPRB-202ENST00000334414 CHMP4AQ9BY43 222 aa6.96□□□□□ -1.3
PTPRB-202ENST00000334414 KIF16BQ96L93 1317 aa6.96□□□□□ -1.3
PTPRB-202ENST00000334414 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.96□□□□□ -1.3
PTPRB-202ENST00000334414 KTN1Q86UP2 1357 aaKnown RBP6.95□□□□□ -1.3
PTPRB-202ENST00000334414 FANCIQ9NVI1 1328 aa6.95□□□□□ -1.3
PTPRB-202ENST00000334414 CALD1Q05682 793 aaKnown RBP6.95□□□□□ -1.3
PTPRB-202ENST00000334414 PLCB2Q00722 1185 aa6.95□□□□□ -1.3
PTPRB-202ENST00000334414 CWC15Q9P013 229 aaKnown RBP6.95□□□□□ -1.3
PTPRB-202ENST00000334414 PMFBP1Q8TBY8 1022 aa6.95□□□□□ -1.3
PTPRB-202ENST00000334414 ATP6V1DQ9Y5K8 247 aa6.95□□□□□ -1.3
PTPRB-202ENST00000334414 KIF3AQ9Y496 699 aa6.94□□□□□ -1.3
PTPRB-202ENST00000334414 STAG3Q9UJ98 1225 aa6.94□□□□□ -1.3
PTPRB-202ENST00000334414 ZNF777Q9ULD5 760 aaPredicted RBP6.94□□□□□ -1.3
PTPRB-202ENST00000334414 TSPY4P0CV99 314 aa6.94□□□□□ -1.3
PTPRB-202ENST00000334414 TSPY10P0CW01 314 aa6.94□□□□□ -1.3
PTPRB-202ENST00000334414 IRX6P78412 446 aaPredicted RBP6.94□□□□□ -1.3
PTPRB-202ENST00000334414 CCDC66A2RUB6 948 aa6.94□□□□□ -1.3
PTPRB-202ENST00000334414 GSE1Q14687 1217 aa6.93□□□□□ -1.3
PTPRB-202ENST00000334414 ARHGAP35Q9NRY4 1499 aa6.93□□□□□ -1.3
PTPRB-202ENST00000334414 IPO8O15397 1037 aaKnown RBP6.93□□□□□ -1.3
PTPRB-202ENST00000334414 RWDD1Q9H446 243 aaPredicted RBP6.93□□□□□ -1.3
PTPRB-202ENST00000334414 FGD1P98174 961 aa6.92□□□□□ -1.3
PTPRB-202ENST00000334414 RALBP1Q15311 655 aa6.92□□□□□ -1.3
PTPRB-202ENST00000334414 ACBD3Q9H3P7 528 aa6.92□□□□□ -1.3
PTPRB-202ENST00000334414 DHX8Q14562 1220 aaKnown RBP6.92□□□□□ -1.3
PTPRB-202ENST00000334414 HDAC5Q9UQL6 1122 aa6.92□□□□□ -1.3
PTPRB-202ENST00000334414 GNL2Q13823 731 aaKnown RBP6.91□□□□□ -1.3
PTPRB-202ENST00000334414 TPM3P06753 285 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms