RNA–Protein interactions for RNA: ENST00000327304.9

EXOSC3-201, Transcript of exosome component 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXOSC3, Length 1,806 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-201ENST00000327304 CEP170Q5SW79 1584 aa30.14■■■□□ 2.42
EXOSC3-201ENST00000327304 NUP160Q12769 1436 aa30.12■■■□□ 2.41
EXOSC3-201ENST00000327304 CEP162Q5TB80 1403 aa30.05■■■□□ 2.4
EXOSC3-201ENST00000327304 KIAA0586Q9BVV6 1533 aa30.03■■■□□ 2.4
EXOSC3-201ENST00000327304 RANGAP1P46060 587 aaPredicted RBP30.03■■■□□ 2.4
EXOSC3-201ENST00000327304 IQGAP2Q13576 1575 aa30.02■■■□□ 2.4
EXOSC3-201ENST00000327304 CLIP1P30622 1438 aa29.96■■■□□ 2.39
EXOSC3-201ENST00000327304 CLASP1Q7Z460 1538 aa29.91■■■□□ 2.38
EXOSC3-201ENST00000327304 UGGT2Q9NYU1 1516 aa29.87■■■□□ 2.37
EXOSC3-201ENST00000327304 ARHGAP35Q9NRY4 1499 aa29.86■■■□□ 2.37
EXOSC3-201ENST00000327304 OSCARQ8IYS5 282 aa29.85■■■□□ 2.37
EXOSC3-201ENST00000327304 JPH4Q96JJ6 628 aa29.82■■■□□ 2.36
EXOSC3-201ENST00000327304 SAMD9Q5K651 1589 aa29.82■■■□□ 2.36
EXOSC3-201ENST00000327304 EFCAB5A4FU69 1503 aa29.82■■■□□ 2.36
EXOSC3-201ENST00000327304 SHROOM2Q13796 1616 aa29.79■■■□□ 2.36
EXOSC3-201ENST00000327304 ARAP1Q96P48 1450 aa29.77■■■□□ 2.36
EXOSC3-201ENST00000327304 P3H3Q8IVL6 736 aa29.77■■■□□ 2.36
EXOSC3-201ENST00000327304 DISP1Q96F81 1524 aa29.77■■■□□ 2.36
EXOSC3-201ENST00000327304 KIAA0556O60303 1618 aa29.73■■■□□ 2.35
EXOSC3-201ENST00000327304 FHOD3Q2V2M9 1422 aa29.73■■■□□ 2.35
EXOSC3-201ENST00000327304 PRG4Q92954 1404 aaPredicted RBP29.71■■■□□ 2.35
EXOSC3-201ENST00000327304 CARMIL2Q6F5E8 1435 aa29.66■■■□□ 2.34
EXOSC3-201ENST00000327304 ERCC6L2Q5T890 1561 aa29.65■■■□□ 2.34
EXOSC3-201ENST00000327304 VPS8Q8N3P4 1428 aa29.6■■■□□ 2.33
EXOSC3-201ENST00000327304 TTBK1Q5TCY1 1321 aaPredicted RBP29.53■■■□□ 2.32
EXOSC3-201ENST00000327304 FMN1Q68DA7 1419 aa29.52■■■□□ 2.32
EXOSC3-201ENST00000327304 PCF11O94913 1555 aaKnown RBP29.48■■■□□ 2.31
EXOSC3-201ENST00000327304 PTPRGP23470 1445 aa29.45■■■□□ 2.3
EXOSC3-201ENST00000327304 CASKIN1Q8WXD9 1431 aa29.42■■■□□ 2.3
EXOSC3-201ENST00000327304 ARHGEF11O15085 1522 aa29.4■■■□□ 2.3
EXOSC3-201ENST00000327304 FYCO1Q9BQS8 1478 aa29.39■■■□□ 2.3
EXOSC3-201ENST00000327304 PLB1Q6P1J6 1458 aa29.39■■■□□ 2.29
EXOSC3-201ENST00000327304 RAPGEF6Q8TEU7 1601 aa29.35■■■□□ 2.29
EXOSC3-201ENST00000327304 ATP1B4Q9UN42 357 aaPredicted RBP29.35■■■□□ 2.29
EXOSC3-201ENST00000327304 ABCA8O94911 1581 aa29.34■■■□□ 2.29
EXOSC3-201ENST00000327304 RIMBP3CA6NJZ7 1639 aa29.32■■■□□ 2.28
EXOSC3-201ENST00000327304 RIMBP3BA6NNM3 1639 aa29.32■■■□□ 2.28
EXOSC3-201ENST00000327304 RIMBP3Q9UFD9 1639 aa29.32■■■□□ 2.28
EXOSC3-201ENST00000327304 HECW1Q76N89 1606 aa29.31■■■□□ 2.28
EXOSC3-201ENST00000327304 UACAQ9BZF9 1416 aa29.28■■■□□ 2.28
EXOSC3-201ENST00000327304 LRRIQ1Q96JM4 1722 aa29.28■■■□□ 2.28
EXOSC3-201ENST00000327304 NUP153P49790 1475 aaKnown RBP29.28■■■□□ 2.28
EXOSC3-201ENST00000327304 ARID3CA6NKF2 412 aa29.22■■■□□ 2.27
EXOSC3-201ENST00000327304 APLP2Q06481 763 aa29.22■■■□□ 2.27
EXOSC3-201ENST00000327304 EPRSP07814 1512 aaKnown RBP29.22■■■□□ 2.27
EXOSC3-201ENST00000327304 ABCC2Q92887 1545 aa29.22■■■□□ 2.27
EXOSC3-201ENST00000327304 TIAM1Q13009 1591 aa29.21■■■□□ 2.27
EXOSC3-201ENST00000327304 CFAP43Q8NDM7 1665 aa29.2■■■□□ 2.27
EXOSC3-201ENST00000327304 CDK13Q14004 1512 aaKnown RBP29.2■■■□□ 2.26
EXOSC3-201ENST00000327304 TRIM26Q12899 539 aaPredicted RBP29.18■■■□□ 2.26
EXOSC3-201ENST00000327304 MAP3K1Q13233 1512 aa29.18■■■□□ 2.26
EXOSC3-201ENST00000327304 CCDC18Q5T9S5 1454 aa29.18■■■□□ 2.26
EXOSC3-201ENST00000327304 PPARGC1BQ86YN6 1023 aaKnown RBP29.17■■■□□ 2.26
EXOSC3-201ENST00000327304 UHRF1BP1LA0JNW5 1464 aa29.17■■■□□ 2.26
EXOSC3-201ENST00000327304 ADCY10Q96PN6 1610 aa29.16■■■□□ 2.26
EXOSC3-201ENST00000327304 PCGF6Q9BYE7 350 aa29.15■■■□□ 2.26
EXOSC3-201ENST00000327304 ATP10BO94823 1461 aa29.12■■■□□ 2.25
EXOSC3-201ENST00000327304 KANK4Q5T7N3 995 aaPredicted RBP29.12■■■□□ 2.25
EXOSC3-201ENST00000327304 CYB5RLQ6IPT4 315 aa29.1■■■□□ 2.25
EXOSC3-201ENST00000327304 LRRC9Q6ZRR7 1453 aa29.07■■■□□ 2.24
EXOSC3-201ENST00000327304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.06■■■□□ 2.24
EXOSC3-201ENST00000327304 HNRNPUL2Q1KMD3 747 aaKnown RBP29.06■■■□□ 2.24
EXOSC3-201ENST00000327304 KDM5BQ9UGL1 1544 aa29.05■■■□□ 2.24
EXOSC3-201ENST00000327304 MAGI3Q5TCQ9 1506 aa29.05■■■□□ 2.24
EXOSC3-201ENST00000327304 ZCCHC11Q5TAX3 1644 aaKnown RBP29.04■■■□□ 2.24
EXOSC3-201ENST00000327304 DNAJC5Q9H3Z4 198 aa29■■■□□ 2.23
EXOSC3-201ENST00000327304 MTUS2Q5JR59 1369 aa29■■■□□ 2.23
EXOSC3-201ENST00000327304 EHBP1L1Q8N3D4 1523 aa28.97■■■□□ 2.23
EXOSC3-201ENST00000327304 CDK11AQ9UQ88 783 aaPredicted RBP28.95■■■□□ 2.23
EXOSC3-201ENST00000327304 TROQ12816 1431 aaPredicted RBP28.92■■■□□ 2.22
EXOSC3-201ENST00000327304 PLEKHD1A6NEE1 506 aa28.9■■■□□ 2.22
EXOSC3-201ENST00000327304 NPM1P06748 294 aaKnown RBP eCLIP28.88■■■□□ 2.21
EXOSC3-201ENST00000327304 SUPT6HQ7KZ85 1726 aaKnown RBP28.86■■■□□ 2.21
EXOSC3-201ENST00000327304 KIF14Q15058 1648 aa28.83■■■□□ 2.21
EXOSC3-201ENST00000327304 NCOA2Q15596 1464 aa28.83■■■□□ 2.21
EXOSC3-201ENST00000327304 ASXL2Q76L83 1435 aa28.82■■■□□ 2.2
EXOSC3-201ENST00000327304 WDR7Q9Y4E6 1490 aa28.81■■■□□ 2.2
EXOSC3-201ENST00000327304 PHLDB1Q86UU1 1377 aa28.78■■■□□ 2.2
EXOSC3-201ENST00000327304 KCNH8Q96L42 1107 aa28.75■■■□□ 2.19
EXOSC3-201ENST00000327304 MAPKBP1O60336 1514 aa28.74■■■□□ 2.19
EXOSC3-201ENST00000327304 ABCC10Q5T3U5 1492 aa28.72■■■□□ 2.19
EXOSC3-201ENST00000327304 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.69■■■□□ 2.18
EXOSC3-201ENST00000327304 TTC37Q6PGP7 1564 aa28.68■■■□□ 2.18
EXOSC3-201ENST00000327304 MYOM3Q5VTT5 1437 aa28.67■■■□□ 2.18
EXOSC3-201ENST00000327304 CCNB3Q8WWL7 1395 aa28.66■■■□□ 2.18
EXOSC3-201ENST00000327304 GPATCH8Q9UKJ3 1502 aaKnown RBP28.63■■■□□ 2.17
EXOSC3-201ENST00000327304 FGD6Q6ZV73 1430 aa28.61■■■□□ 2.17
EXOSC3-201ENST00000327304 RRBP1Q9P2E9 1410 aaKnown RBP28.61■■■□□ 2.17
EXOSC3-201ENST00000327304 CDC42BPAQ5VT25 1732 aa28.61■■■□□ 2.17
EXOSC3-201ENST00000327304 ABCA9Q8IUA7 1624 aa28.59■■■□□ 2.17
EXOSC3-201ENST00000327304 ITSN2Q9NZM3 1697 aa28.58■■■□□ 2.17
EXOSC3-201ENST00000327304 PREX2Q70Z35 1606 aa28.55■■■□□ 2.16
EXOSC3-201ENST00000327304 MYO5CQ9NQX4 1742 aa28.55■■■□□ 2.16
EXOSC3-201ENST00000327304 MIA2Q96PC5 1412 aa28.54■■■□□ 2.16
EXOSC3-201ENST00000327304 HRCP23327 699 aa28.53■■■□□ 2.16
EXOSC3-201ENST00000327304 DIP2BQ9P265 1576 aa28.53■■■□□ 2.16
EXOSC3-201ENST00000327304 CDC42BPBQ9Y5S2 1711 aa28.52■■■□□ 2.16
EXOSC3-201ENST00000327304 PTPN23Q9H3S7 1636 aa28.52■■■□□ 2.16
EXOSC3-201ENST00000327304 CFDP1Q9UEE9 299 aaPredicted RBP28.51■■■□□ 2.15
EXOSC3-201ENST00000327304 PLCH2O75038 1416 aa28.49■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms