RNA–Protein interactions for RNA: ENST00000324862.6

PRPF3-201, Transcript of pre-mRNA processing factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF3, Length 2,433 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-201ENST00000324862 CHD1O14646 1710 aa24.53■■□□□ 1.52
PRPF3-201ENST00000324862 CEP170Q5SW79 1584 aa24.52■■□□□ 1.52
PRPF3-201ENST00000324862 CLIP1P30622 1438 aa24.47■■□□□ 1.51
PRPF3-201ENST00000324862 NUP160Q12769 1436 aa24.47■■□□□ 1.51
PRPF3-201ENST00000324862 CTTNBP2Q8WZ74 1663 aa24.46■■□□□ 1.51
PRPF3-201ENST00000324862 P3H3Q8IVL6 736 aa24.44■■□□□ 1.5
PRPF3-201ENST00000324862 KIAA0586Q9BVV6 1533 aa24.41■■□□□ 1.5
PRPF3-201ENST00000324862 IQGAP2Q13576 1575 aa24.39■■□□□ 1.5
PRPF3-201ENST00000324862 ARHGAP35Q9NRY4 1499 aa24.38■■□□□ 1.49
PRPF3-201ENST00000324862 ARAP1Q96P48 1450 aa24.33■■□□□ 1.49
PRPF3-201ENST00000324862 JPH4Q96JJ6 628 aa24.33■■□□□ 1.49
PRPF3-201ENST00000324862 FHOD3Q2V2M9 1422 aa24.3■■□□□ 1.48
PRPF3-201ENST00000324862 OSCARQ8IYS5 282 aa24.28■■□□□ 1.48
PRPF3-201ENST00000324862 TTBK1Q5TCY1 1321 aaPredicted RBP24.28■■□□□ 1.48
PRPF3-201ENST00000324862 UGGT2Q9NYU1 1516 aa24.26■■□□□ 1.47
PRPF3-201ENST00000324862 CLASP1Q7Z460 1538 aa24.25■■□□□ 1.47
PRPF3-201ENST00000324862 DISP1Q96F81 1524 aa24.24■■□□□ 1.47
PRPF3-201ENST00000324862 SAMD9Q5K651 1589 aa24.23■■□□□ 1.47
PRPF3-201ENST00000324862 PRG4Q92954 1404 aaPredicted RBP24.2■■□□□ 1.47
PRPF3-201ENST00000324862 EFCAB5A4FU69 1503 aa24.2■■□□□ 1.47
PRPF3-201ENST00000324862 ERCC6L2Q5T890 1561 aa24.18■■□□□ 1.46
PRPF3-201ENST00000324862 KIAA0556O60303 1618 aa24.17■■□□□ 1.46
PRPF3-201ENST00000324862 VPS8Q8N3P4 1428 aa24.16■■□□□ 1.46
PRPF3-201ENST00000324862 SHROOM2Q13796 1616 aa24.13■■□□□ 1.45
PRPF3-201ENST00000324862 PPARGC1BQ86YN6 1023 aaKnown RBP24.13■■□□□ 1.45
PRPF3-201ENST00000324862 CARMIL2Q6F5E8 1435 aa24.1■■□□□ 1.45
PRPF3-201ENST00000324862 ATP1B4Q9UN42 357 aaPredicted RBP24.1■■□□□ 1.45
PRPF3-201ENST00000324862 FMN1Q68DA7 1419 aa24.03■■□□□ 1.44
PRPF3-201ENST00000324862 ARID3CA6NKF2 412 aa24.03■■□□□ 1.44
PRPF3-201ENST00000324862 PCF11O94913 1555 aaKnown RBP24.02■■□□□ 1.44
PRPF3-201ENST00000324862 PLB1Q6P1J6 1458 aa23.99■■□□□ 1.43
PRPF3-201ENST00000324862 PTPRGP23470 1445 aa23.99■■□□□ 1.43
PRPF3-201ENST00000324862 CASKIN1Q8WXD9 1431 aa23.96■■□□□ 1.43
PRPF3-201ENST00000324862 FYCO1Q9BQS8 1478 aa23.91■■□□□ 1.42
PRPF3-201ENST00000324862 KANK4Q5T7N3 995 aaPredicted RBP23.91■■□□□ 1.42
PRPF3-201ENST00000324862 APLP2Q06481 763 aa23.9■■□□□ 1.42
PRPF3-201ENST00000324862 ARHGEF11O15085 1522 aa23.88■■□□□ 1.41
PRPF3-201ENST00000324862 NUP153P49790 1475 aaKnown RBP23.86■■□□□ 1.41
PRPF3-201ENST00000324862 RAPGEF6Q8TEU7 1601 aa23.86■■□□□ 1.41
PRPF3-201ENST00000324862 LRRIQ1Q96JM4 1722 aa23.85■■□□□ 1.41
PRPF3-201ENST00000324862 ABCA8O94911 1581 aa23.84■■□□□ 1.41
PRPF3-201ENST00000324862 CDK13Q14004 1512 aaKnown RBP23.84■■□□□ 1.41
PRPF3-201ENST00000324862 UACAQ9BZF9 1416 aa23.82■■□□□ 1.4
PRPF3-201ENST00000324862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.81■■□□□ 1.4
PRPF3-201ENST00000324862 HNRNPUL2Q1KMD3 747 aaKnown RBP23.81■■□□□ 1.4
PRPF3-201ENST00000324862 EPRSP07814 1512 aaKnown RBP23.81■■□□□ 1.4
PRPF3-201ENST00000324862 HECW1Q76N89 1606 aa23.81■■□□□ 1.4
PRPF3-201ENST00000324862 TIAM1Q13009 1591 aa23.8■■□□□ 1.4
PRPF3-201ENST00000324862 RIMBP3CA6NJZ7 1639 aa23.78■■□□□ 1.4
PRPF3-201ENST00000324862 RIMBP3BA6NNM3 1639 aa23.78■■□□□ 1.4
PRPF3-201ENST00000324862 RIMBP3Q9UFD9 1639 aa23.78■■□□□ 1.4
PRPF3-201ENST00000324862 CYB5RLQ6IPT4 315 aa23.77■■□□□ 1.4
PRPF3-201ENST00000324862 ATP10BO94823 1461 aa23.73■■□□□ 1.39
PRPF3-201ENST00000324862 ABCC2Q92887 1545 aa23.73■■□□□ 1.39
PRPF3-201ENST00000324862 MAGI3Q5TCQ9 1506 aa23.72■■□□□ 1.39
PRPF3-201ENST00000324862 CFAP43Q8NDM7 1665 aa23.72■■□□□ 1.39
PRPF3-201ENST00000324862 LRRC9Q6ZRR7 1453 aa23.72■■□□□ 1.39
PRPF3-201ENST00000324862 CCDC18Q5T9S5 1454 aa23.71■■□□□ 1.39
PRPF3-201ENST00000324862 MAP3K1Q13233 1512 aa23.7■■□□□ 1.38
PRPF3-201ENST00000324862 ADCY10Q96PN6 1610 aa23.69■■□□□ 1.38
PRPF3-201ENST00000324862 MTUS2Q5JR59 1369 aa23.67■■□□□ 1.38
PRPF3-201ENST00000324862 UHRF1BP1LA0JNW5 1464 aa23.65■■□□□ 1.38
PRPF3-201ENST00000324862 KDM5BQ9UGL1 1544 aa23.6■■□□□ 1.37
PRPF3-201ENST00000324862 ZCCHC11Q5TAX3 1644 aaKnown RBP23.58■■□□□ 1.37
PRPF3-201ENST00000324862 PLEKHD1A6NEE1 506 aa23.58■■□□□ 1.37
PRPF3-201ENST00000324862 CDK11AQ9UQ88 783 aaPredicted RBP23.58■■□□□ 1.37
PRPF3-201ENST00000324862 PHLDB1Q86UU1 1377 aa23.56■■□□□ 1.36
PRPF3-201ENST00000324862 EHBP1L1Q8N3D4 1523 aa23.56■■□□□ 1.36
PRPF3-201ENST00000324862 TROQ12816 1431 aaPredicted RBP23.54■■□□□ 1.36
PRPF3-201ENST00000324862 KCNH8Q96L42 1107 aa23.53■■□□□ 1.36
PRPF3-201ENST00000324862 NCOA2Q15596 1464 aa23.53■■□□□ 1.36
PRPF3-201ENST00000324862 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
PRPF3-201ENST00000324862 PCGF6Q9BYE7 350 aa23.51■■□□□ 1.35
PRPF3-201ENST00000324862 NPM1P06748 294 aaKnown RBP eCLIP23.51■■□□□ 1.35
PRPF3-201ENST00000324862 KIF14Q15058 1648 aa23.5■■□□□ 1.35
PRPF3-201ENST00000324862 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
PRPF3-201ENST00000324862 SUPT6HQ7KZ85 1726 aaKnown RBP23.46■■□□□ 1.35
PRPF3-201ENST00000324862 ASXL2Q76L83 1435 aa23.46■■□□□ 1.35
PRPF3-201ENST00000324862 WDR7Q9Y4E6 1490 aa23.41■■□□□ 1.34
PRPF3-201ENST00000324862 ABCC10Q5T3U5 1492 aa23.38■■□□□ 1.33
PRPF3-201ENST00000324862 CCNB3Q8WWL7 1395 aa23.38■■□□□ 1.33
PRPF3-201ENST00000324862 MYOM3Q5VTT5 1437 aa23.38■■□□□ 1.33
PRPF3-201ENST00000324862 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.35■■□□□ 1.335e-7■■□□□ 12.4
PRPF3-201ENST00000324862 FAM50AQ14320 339 aaKnown RBP23.35■■□□□ 1.33
PRPF3-201ENST00000324862 RRBP1Q9P2E9 1410 aaKnown RBP23.35■■□□□ 1.33
PRPF3-201ENST00000324862 FGD6Q6ZV73 1430 aa23.35■■□□□ 1.33
PRPF3-201ENST00000324862 TTC37Q6PGP7 1564 aa23.35■■□□□ 1.33
PRPF3-201ENST00000324862 GPATCH8Q9UKJ3 1502 aaKnown RBP23.34■■□□□ 1.33
PRPF3-201ENST00000324862 ZNF644Q9H582 1327 aaPredicted RBP23.33■■□□□ 1.33
PRPF3-201ENST00000324862 ITGAEP38570 1179 aa23.33■■□□□ 1.33
PRPF3-201ENST00000324862 ZNF777Q9ULD5 760 aaPredicted RBP23.31■■□□□ 1.32
PRPF3-201ENST00000324862 CFDP1Q9UEE9 299 aaPredicted RBP23.3■■□□□ 1.32
PRPF3-201ENST00000324862 MAPKBP1O60336 1514 aa23.29■■□□□ 1.32
PRPF3-201ENST00000324862 CDC42BPAQ5VT25 1732 aa23.25■■□□□ 1.31
PRPF3-201ENST00000324862 PTPN23Q9H3S7 1636 aa23.23■■□□□ 1.31
PRPF3-201ENST00000324862 MIA2Q96PC5 1412 aa23.22■■□□□ 1.31
PRPF3-201ENST00000324862 FAM69CQ0P6D2 419 aa23.21■■□□□ 1.31
PRPF3-201ENST00000324862 CDC42BPBQ9Y5S2 1711 aa23.19■■□□□ 1.3
PRPF3-201ENST00000324862 PLCH2O75038 1416 aa23.19■■□□□ 1.3
PRPF3-201ENST00000324862 ABCA9Q8IUA7 1624 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms