RNA–Protein interactions for RNA: ENST00000322507.12

COL12A1-201, Transcript of collagen type XII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL12A1, Length 11,723 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-201ENST00000322507 FBLN2P98095 1184 aa12.7□□□□□ -0.38
COL12A1-201ENST00000322507 NRDCO43847 1150 aa12.7□□□□□ -0.38
COL12A1-201ENST00000322507 PPM1GO15355 546 aaPredicted RBP12.69□□□□□ -0.38
COL12A1-201ENST00000322507 STK11IPQ8N1F8 1099 aa12.69□□□□□ -0.38
COL12A1-201ENST00000322507 RSF1Q96T23 1441 aaPredicted RBP12.69□□□□□ -0.38
COL12A1-201ENST00000322507 WDR43Q15061 677 aaKnown RBP eCLIP12.68□□□□□ -0.38
COL12A1-201ENST00000322507 TMC1Q8TDI8 760 aa12.68□□□□□ -0.38
COL12A1-201ENST00000322507 RSPH6AQ9H0K4 717 aa12.67□□□□□ -0.38
COL12A1-201ENST00000322507 CCDC136Q96JN2 1154 aa12.67□□□□□ -0.38
COL12A1-201ENST00000322507 STAG3Q9UJ98 1225 aa12.66□□□□□ -0.38
COL12A1-201ENST00000322507 HNRNPUQ00839 825 aaKnown RBP eCLIP12.66□□□□□ -0.38
COL12A1-201ENST00000322507 NPM1P06748 294 aaKnown RBP eCLIP12.65□□□□□ -0.38
COL12A1-201ENST00000322507 CDCA8Q53HL2 280 aa12.65□□□□□ -0.38
COL12A1-201ENST00000322507 PABPN1Q86U42 306 aaKnown RBP eCLIP12.63□□□□□ -0.39
COL12A1-201ENST00000322507 CHMP4BQ9H444 224 aaKnown RBP12.63□□□□□ -0.39
COL12A1-201ENST00000322507 MSNP26038 577 aaKnown RBP12.62□□□□□ -0.39
COL12A1-201ENST00000322507 FKBP8Q14318 412 aa12.61□□□□□ -0.39
COL12A1-201ENST00000322507 TSPY4P0CV99 314 aa12.61□□□□□ -0.39
COL12A1-201ENST00000322507 TSPY10P0CW01 314 aa12.61□□□□□ -0.39
COL12A1-201ENST00000322507 MTUS2Q5JR59 1369 aa12.61□□□□□ -0.39
COL12A1-201ENST00000322507 NACADO15069 1562 aa12.61□□□□□ -0.39
COL12A1-201ENST00000322507 ZNF777Q9ULD5 760 aaPredicted RBP12.6□□□□□ -0.39
COL12A1-201ENST00000322507 ARXQ96QS3 562 aa12.6□□□□□ -0.39
COL12A1-201ENST00000322507 HSP90AA2PQ14568 343 aaPredicted RBP12.59□□□□□ -0.39
COL12A1-201ENST00000322507 GOLGA6L1Q8N7Z2 621 aa12.59□□□□□ -0.39
COL12A1-201ENST00000322507 NEFHP12036 1026 aa12.59□□□□□ -0.39
COL12A1-201ENST00000322507 CASC1Q6TDU7 716 aa12.59□□□□□ -0.39
COL12A1-201ENST00000322507 GOLGA3Q08378 1498 aa12.58□□□□□ -0.39
COL12A1-201ENST00000322507 ZRSR1Q15695 479 aaKnown RBP12.58□□□□□ -0.4
COL12A1-201ENST00000322507 PKNOX2Q96KN3 472 aa12.57□□□□□ -0.4
COL12A1-201ENST00000322507 GOLGA6L3A6NEY3 463 aa12.56□□□□□ -0.4
COL12A1-201ENST00000322507 CLIP1P30622 1438 aa12.56□□□□□ -0.4
COL12A1-201ENST00000322507 EIF4G2P78344 907 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL12A1-201ENST00000322507 CFAP44Q96MT7 982 aa12.54□□□□□ -0.4
COL12A1-201ENST00000322507 MRS2Q9HD23 443 aa12.52□□□□□ -0.41
COL12A1-201ENST00000322507 MS4A1P11836 297 aa12.52□□□□□ -0.41
COL12A1-201ENST00000322507 RTN4Q9NQC3 1192 aaKnown RBP12.51□□□□□ -0.41
COL12A1-201ENST00000322507 CFAP53Q96M91 514 aa12.51□□□□□ -0.41
COL12A1-201ENST00000322507 FAM9BQ8IZU0 186 aa12.5□□□□□ -0.41
COL12A1-201ENST00000322507 GOLGA6L4A6NEF3 574 aa12.5□□□□□ -0.41
COL12A1-201ENST00000322507 HOMEZQ8IX15 550 aa12.49□□□□□ -0.41
COL12A1-201ENST00000322507 NOM1Q5C9Z4 860 aaKnown RBP12.48□□□□□ -0.41
COL12A1-201ENST00000322507 CEP164Q9UPV0 1460 aa12.48□□□□□ -0.41
COL12A1-201ENST00000322507 DEKP35659 375 aaKnown RBP12.47□□□□□ -0.41
COL12A1-201ENST00000322507 P3H3Q8IVL6 736 aa12.47□□□□□ -0.41
COL12A1-201ENST00000322507 DDX10Q13206 875 aaKnown RBP12.47□□□□□ -0.41
COL12A1-201ENST00000322507 FHAD1B1AJZ9 1412 aa12.46□□□□□ -0.41
COL12A1-201ENST00000322507 VSIG10Q8N0Z9 540 aa12.45□□□□□ -0.42
COL12A1-201ENST00000322507 NOP58Q9Y2X3 529 aaKnown RBP12.45□□□□□ -0.42
COL12A1-201ENST00000322507 CHGAP10645 457 aaKnown RBP12.45□□□□□ -0.42
COL12A1-201ENST00000322507 KIF27Q86VH2 1401 aa12.43□□□□□ -0.42
COL12A1-201ENST00000322507 HAP1P54257 671 aaPredicted RBP12.43□□□□□ -0.42
COL12A1-201ENST00000322507 TIMELESSQ9UNS1 1208 aa12.41□□□□□ -0.42
COL12A1-201ENST00000322507 BAZ1AQ9NRL2 1556 aaPredicted RBP12.41□□□□□ -0.42
COL12A1-201ENST00000322507 MEX3CQ5U5Q3 659 aaKnown RBP12.41□□□□□ -0.42
COL12A1-201ENST00000322507 KIAA2012Q0VF49 1180 aa12.4□□□□□ -0.42
COL12A1-201ENST00000322507 KNSTRNQ9Y448 316 aa12.4□□□□□ -0.42
COL12A1-201ENST00000322507 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.4□□□□□ -0.42
COL12A1-201ENST00000322507 FTSJ3Q8IY81 847 aaKnown RBP12.39□□□□□ -0.43
COL12A1-201ENST00000322507 PRKCSHP14314 528 aaPredicted RBP12.38□□□□□ -0.43
COL12A1-201ENST00000322507 BAZ1BQ9UIG0 1483 aaKnown RBP12.38□□□□□ -0.43
COL12A1-201ENST00000322507 CHMP7Q8WUX9 453 aaPredicted RBP12.38□□□□□ -0.43
COL12A1-201ENST00000322507 CEP162Q5TB80 1403 aa12.38□□□□□ -0.43
COL12A1-201ENST00000322507 TAF3Q5VWG9 929 aa12.36□□□□□ -0.43
COL12A1-201ENST00000322507 NUDCQ9Y266 331 aa12.36□□□□□ -0.43
COL12A1-201ENST00000322507 MTERF4Q7Z6M4 381 aaKnown RBP12.36□□□□□ -0.43
COL12A1-201ENST00000322507 C14orf37Q86TY3 774 aa12.36□□□□□ -0.43
COL12A1-201ENST00000322507 SCAF1Q9H7N4 1312 aaKnown RBP12.35□□□□□ -0.43
COL12A1-201ENST00000322507 PLEKHD1A6NEE1 506 aa12.35□□□□□ -0.43
COL12A1-201ENST00000322507 CHMP4AQ9BY43 222 aa12.34□□□□□ -0.43
COL12A1-201ENST00000322507 PPP1R15AO75807 674 aaPredicted RBP12.34□□□□□ -0.43
COL12A1-201ENST00000322507 NOC3LQ8WTT2 800 aaKnown RBP12.34□□□□□ -0.43
COL12A1-201ENST00000322507 TNIKQ9UKE5 1360 aa12.33□□□□□ -0.43
COL12A1-201ENST00000322507 WRNQ14191 1432 aaPredicted RBP eCLIP12.33□□□□□ -0.44
COL12A1-201ENST00000322507 ARID3CA6NKF2 412 aa12.33□□□□□ -0.44
COL12A1-201ENST00000322507 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.33□□□□□ -0.44
COL12A1-201ENST00000322507 TEX35Q5T0J7 233 aa12.32□□□□□ -0.44
COL12A1-201ENST00000322507 MAPK8IP3Q9UPT6 1336 aa12.31□□□□□ -0.44
COL12A1-201ENST00000322507 MAP7D2Q96T17 732 aa12.3□□□□□ -0.44
COL12A1-201ENST00000322507 KANK1Q14678 1352 aa12.3□□□□□ -0.44
COL12A1-201ENST00000322507 GPS2Q13227 327 aa12.3□□□□□ -0.44
COL12A1-201ENST00000322507 ZNF771Q7L3S4 317 aaPredicted RBP12.3□□□□□ -0.44
COL12A1-201ENST00000322507 CWC15Q9P013 229 aaKnown RBP12.3□□□□□ -0.44
COL12A1-201ENST00000322507 HTATSF1O43719 755 aaKnown RBP12.29□□□□□ -0.44
COL12A1-201ENST00000322507 CCDC66A2RUB6 948 aa12.29□□□□□ -0.44
COL12A1-201ENST00000322507 RRP12Q5JTH9 1297 aaKnown RBP12.29□□□□□ -0.44
COL12A1-201ENST00000322507 PPP4R2Q9NY27 417 aa12.28□□□□□ -0.44
COL12A1-201ENST00000322507 MCCP23508 829 aa12.28□□□□□ -0.44
COL12A1-201ENST00000322507 CHIC2Q9UKJ5 165 aa12.27□□□□□ -0.44
COL12A1-201ENST00000322507 PDE4CQ08493 712 aa12.27□□□□□ -0.44
COL12A1-201ENST00000322507 HDGFP51858 240 aaKnown RBP12.27□□□□□ -0.44
COL12A1-201ENST00000322507 KDM2AQ9Y2K7 1162 aa12.26□□□□□ -0.45
COL12A1-201ENST00000322507 PATL2C9JE40 543 aaKnown RBP12.26□□□□□ -0.45
COL12A1-201ENST00000322507 HMMRO75330 724 aa12.24□□□□□ -0.45
COL12A1-201ENST00000322507 CALD1Q05682 793 aaKnown RBP12.24□□□□□ -0.45
COL12A1-201ENST00000322507 SALL2Q9Y467 1007 aaPredicted RBP12.24□□□□□ -0.45
COL12A1-201ENST00000322507 CFDP1Q9UEE9 299 aaPredicted RBP12.24□□□□□ -0.45
COL12A1-201ENST00000322507 DRC7Q8IY82 874 aa12.23□□□□□ -0.45
COL12A1-201ENST00000322507 RDXP35241 583 aaKnown RBP12.23□□□□□ -0.45
COL12A1-201ENST00000322507 CCER2I3L3R5 266 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms