RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 IGF1RP08069 1367 aa13.27□□□□□ -0.29
TMEM39A-201ENST00000319172 KCNH8Q96L42 1107 aa13.26□□□□□ -0.29
TMEM39A-201ENST00000319172 FHAD1B1AJZ9 1412 aa13.24□□□□□ -0.29
TMEM39A-201ENST00000319172 PLEKHD1A6NEE1 506 aa13.24□□□□□ -0.29
TMEM39A-201ENST00000319172 NPM1P06748 294 aaKnown RBP eCLIP13.23□□□□□ -0.29
TMEM39A-201ENST00000319172 FHOD3Q2V2M9 1422 aa13.21□□□□□ -0.29
TMEM39A-201ENST00000319172 PEG3Q9GZU2 1588 aa13.2□□□□□ -0.3
TMEM39A-201ENST00000319172 CUX1P39880 1505 aa13.19□□□□□ -0.3
TMEM39A-201ENST00000319172 TSPY4P0CV99 314 aa13.19□□□□□ -0.3
TMEM39A-201ENST00000319172 TSPY10P0CW01 314 aa13.19□□□□□ -0.3
TMEM39A-201ENST00000319172 CCNB3Q8WWL7 1395 aa13.18□□□□□ -0.3
TMEM39A-201ENST00000319172 CFDP1Q9UEE9 299 aaPredicted RBP13.18□□□□□ -0.3
TMEM39A-201ENST00000319172 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.16□□□□□ -0.3
TMEM39A-201ENST00000319172 TONSLQ96HA7 1378 aa13.16□□□□□ -0.3
TMEM39A-201ENST00000319172 GAPVD1Q14C86 1478 aa13.15□□□□□ -0.3
TMEM39A-201ENST00000319172 AQRO60306 1485 aaKnown RBP eCLIP13.15□□□□□ -0.31e-6■■■■□ 21.2
TMEM39A-201ENST00000319172 TOP2BQ02880 1626 aa13.13□□□□□ -0.31
TMEM39A-201ENST00000319172 FMN1Q68DA7 1419 aa13.11□□□□□ -0.31
TMEM39A-201ENST00000319172 TOPBP1Q92547 1522 aa13.11□□□□□ -0.31
TMEM39A-201ENST00000319172 JPH4Q96JJ6 628 aa13.11□□□□□ -0.31
TMEM39A-201ENST00000319172 HIRIP3Q9BW71 556 aaPredicted RBP13.1□□□□□ -0.31
TMEM39A-201ENST00000319172 POLA1P09884 1462 aaPredicted RBP13.09□□□□□ -0.31
TMEM39A-201ENST00000319172 SLC4A1APQ9BWU0 796 aaKnown RBP13.09□□□□□ -0.31
TMEM39A-201ENST00000319172 ERICH6Q7L0X2 663 aa13.09□□□□□ -0.31
TMEM39A-201ENST00000319172 NEFLP07196 543 aa13.09□□□□□ -0.31
TMEM39A-201ENST00000319172 SIN3AQ96ST3 1273 aa13.08□□□□□ -0.32
TMEM39A-201ENST00000319172 CARMIL2Q6F5E8 1435 aa13.06□□□□□ -0.32
TMEM39A-201ENST00000319172 PRXQ9BXM0 1461 aa13.06□□□□□ -0.32
TMEM39A-201ENST00000319172 ARHGAP35Q9NRY4 1499 aa13.05□□□□□ -0.32
TMEM39A-201ENST00000319172 ANP32CO43423 234 aa13.05□□□□□ -0.32
TMEM39A-201ENST00000319172 DDX10Q13206 875 aaKnown RBP13.04□□□□□ -0.32
TMEM39A-201ENST00000319172 KIF21BO75037 1637 aa13.04□□□□□ -0.32
TMEM39A-201ENST00000319172 KDM2AQ9Y2K7 1162 aa13.03□□□□□ -0.32
TMEM39A-201ENST00000319172 CHGAP10645 457 aaKnown RBP13.02□□□□□ -0.32
TMEM39A-201ENST00000319172 ARAP1Q96P48 1450 aa13.01□□□□□ -0.33
TMEM39A-201ENST00000319172 MRC2Q9UBG0 1479 aa13.01□□□□□ -0.33
TMEM39A-201ENST00000319172 DNMBPQ6XZF7 1577 aa12.99□□□□□ -0.33
TMEM39A-201ENST00000319172 ERICH3Q5RHP9 1530 aa12.98□□□□□ -0.33
TMEM39A-201ENST00000319172 RAB3GAP2Q9H2M9 1393 aa12.97□□□□□ -0.33
TMEM39A-201ENST00000319172 SETD5Q9C0A6 1442 aa12.97□□□□□ -0.33
TMEM39A-201ENST00000319172 LAMC3Q9Y6N6 1575 aa12.96□□□□□ -0.33
TMEM39A-201ENST00000319172 GRIN2BQ13224 1484 aa12.96□□□□□ -0.33
TMEM39A-201ENST00000319172 RGL3Q3MIN7 710 aa12.95□□□□□ -0.34
TMEM39A-201ENST00000319172 PLPPR3Q6T4P5 718 aa12.94□□□□□ -0.34
TMEM39A-201ENST00000319172 MIER1Q8N108 512 aa12.94□□□□□ -0.34
TMEM39A-201ENST00000319172 FOXD1Q16676 465 aa12.94□□□□□ -0.34
TMEM39A-201ENST00000319172 URB2Q14146 1524 aaKnown RBP12.93□□□□□ -0.34
TMEM39A-201ENST00000319172 ABCA10Q8WWZ4 1543 aa12.92□□□□□ -0.34
TMEM39A-201ENST00000319172 CLSPNQ9HAW4 1339 aa12.91□□□□□ -0.34
TMEM39A-201ENST00000319172 SENP3Q9H4L4 574 aaPredicted RBP12.91□□□□□ -0.34
TMEM39A-201ENST00000319172 IFT140Q96RY7 1462 aa12.91□□□□□ -0.34
TMEM39A-201ENST00000319172 ESF1Q9H501 851 aaKnown RBP12.9□□□□□ -0.34
TMEM39A-201ENST00000319172 PTPRGP23470 1445 aa12.9□□□□□ -0.34
TMEM39A-201ENST00000319172 BCANQ96GW7 911 aa12.9□□□□□ -0.34
TMEM39A-201ENST00000319172 GTF3C3Q9Y5Q9 886 aa12.89□□□□□ -0.35
TMEM39A-201ENST00000319172 PHLDB1Q86UU1 1377 aa12.88□□□□□ -0.35
TMEM39A-201ENST00000319172 HNRNPMP52272 730 aaKnown RBP eCLIP12.88□□□□□ -0.358e-7■■■□□ 16.7
TMEM39A-201ENST00000319172 STAG3Q9UJ98 1225 aa12.87□□□□□ -0.35
TMEM39A-201ENST00000319172 EIF4G2P78344 907 aaKnown RBP eCLIP12.87□□□□□ -0.35
TMEM39A-201ENST00000319172 CCDC18Q5T9S5 1454 aa12.87□□□□□ -0.35
TMEM39A-201ENST00000319172 SNAPC4Q5SXM2 1469 aa12.86□□□□□ -0.35
TMEM39A-201ENST00000319172 BIVM-ERCC5R4GMW8 1640 aa12.86□□□□□ -0.35
TMEM39A-201ENST00000319172 LRRC9Q6ZRR7 1453 aa12.84□□□□□ -0.35
TMEM39A-201ENST00000319172 ZNF644Q9H582 1327 aaPredicted RBP12.84□□□□□ -0.35
TMEM39A-201ENST00000319172 ACIN1Q9UKV3 1341 aaKnown RBP12.84□□□□□ -0.35
TMEM39A-201ENST00000319172 CASKIN1Q8WXD9 1431 aa12.84□□□□□ -0.35
TMEM39A-201ENST00000319172 ZNF608Q9ULD9 1512 aaPredicted RBP12.83□□□□□ -0.36
TMEM39A-201ENST00000319172 PKD2Q13563 968 aa12.83□□□□□ -0.36
TMEM39A-201ENST00000319172 MPHOSPH9Q99550 1183 aa12.83□□□□□ -0.36
TMEM39A-201ENST00000319172 EFCAB2Q5VUJ9 269 aa12.83□□□□□ -0.36
TMEM39A-201ENST00000319172 DHX57Q6P158 1386 aaKnown RBP12.82□□□□□ -0.36
TMEM39A-201ENST00000319172 OSCARQ8IYS5 282 aa12.81□□□□□ -0.36
TMEM39A-201ENST00000319172 NUP155O75694 1391 aa12.78□□□□□ -0.36
TMEM39A-201ENST00000319172 FGD6Q6ZV73 1430 aa12.78□□□□□ -0.36
TMEM39A-201ENST00000319172 FAM9BQ8IZU0 186 aa12.78□□□□□ -0.36
TMEM39A-201ENST00000319172 ANKRD30AQ9BXX3 1397 aa12.78□□□□□ -0.36
TMEM39A-201ENST00000319172 PRG4Q92954 1404 aaPredicted RBP12.77□□□□□ -0.37
TMEM39A-201ENST00000319172 CYB5RLQ6IPT4 315 aa12.76□□□□□ -0.37
TMEM39A-201ENST00000319172 DCAF11Q8TEB1 546 aa12.76□□□□□ -0.37
TMEM39A-201ENST00000319172 CARD11Q9BXL7 1154 aa12.76□□□□□ -0.37
TMEM39A-201ENST00000319172 PRDM2Q13029 1718 aa12.76□□□□□ -0.37
TMEM39A-201ENST00000319172 FYCO1Q9BQS8 1478 aa12.76□□□□□ -0.37
TMEM39A-201ENST00000319172 MYOM3Q5VTT5 1437 aa12.76□□□□□ -0.37
TMEM39A-201ENST00000319172 NCOA2Q15596 1464 aa12.75□□□□□ -0.37
TMEM39A-201ENST00000319172 HNRNPUQ00839 825 aaKnown RBP eCLIP12.75□□□□□ -0.37
TMEM39A-201ENST00000319172 GGT6Q6P531 493 aa12.75□□□□□ -0.37
TMEM39A-201ENST00000319172 EFCAB5A4FU69 1503 aa12.75□□□□□ -0.37
TMEM39A-201ENST00000319172 TIMELESSQ9UNS1 1208 aa12.74□□□□□ -0.37
TMEM39A-201ENST00000319172 ARID4BQ4LE39 1312 aaPredicted RBP12.73□□□□□ -0.37
TMEM39A-201ENST00000319172 PPP1R15AO75807 674 aaPredicted RBP12.72□□□□□ -0.37
TMEM39A-201ENST00000319172 KIAA0586Q9BVV6 1533 aa12.72□□□□□ -0.37
TMEM39A-201ENST00000319172 MRS2Q9HD23 443 aa12.72□□□□□ -0.37
TMEM39A-201ENST00000319172 L3MBTL2Q969R5 705 aa12.72□□□□□ -0.37
TMEM39A-201ENST00000319172 MLECQ14165 292 aa12.71□□□□□ -0.37
TMEM39A-201ENST00000319172 SALL2Q9Y467 1007 aaPredicted RBP12.71□□□□□ -0.37
TMEM39A-201ENST00000319172 RRBP1Q9P2E9 1410 aaKnown RBP12.71□□□□□ -0.38
TMEM39A-201ENST00000319172 SPAG9O60271 1321 aaKnown RBP12.71□□□□□ -0.38
TMEM39A-201ENST00000319172 KIF3BO15066 747 aa12.7□□□□□ -0.38
TMEM39A-201ENST00000319172 TIAM1Q13009 1591 aa12.7□□□□□ -0.38
TMEM39A-201ENST00000319172 CUL7Q14999 1698 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms