RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 PPARGC1BQ86YN6 1023 aaKnown RBP12.59□□□□□ -0.39
PDLIM5-201ENST00000317968 P3H3Q8IVL6 736 aa12.59□□□□□ -0.39
PDLIM5-201ENST00000317968 URB2Q14146 1524 aaKnown RBP12.59□□□□□ -0.39
PDLIM5-201ENST00000317968 CUL7Q14999 1698 aa12.58□□□□□ -0.4
PDLIM5-201ENST00000317968 MTUS2Q5JR59 1369 aa12.56□□□□□ -0.4
PDLIM5-201ENST00000317968 WDR97A6NE52 1622 aa12.55□□□□□ -0.4
PDLIM5-201ENST00000317968 HRCP23327 699 aa12.54□□□□□ -0.4
PDLIM5-201ENST00000317968 EFCAB5A4FU69 1503 aa12.54□□□□□ -0.4
PDLIM5-201ENST00000317968 MAGI1Q96QZ7 1491 aaPredicted RBP12.5□□□□□ -0.41
PDLIM5-201ENST00000317968 FAM50AQ14320 339 aaKnown RBP12.5□□□□□ -0.41
PDLIM5-201ENST00000317968 WDR62O43379 1518 aa12.48□□□□□ -0.41
PDLIM5-201ENST00000317968 AQRO60306 1485 aaKnown RBP eCLIP12.48□□□□□ -0.41
PDLIM5-201ENST00000317968 ESF1Q9H501 851 aaKnown RBP12.46□□□□□ -0.41
PDLIM5-201ENST00000317968 PLEKHD1A6NEE1 506 aa12.46□□□□□ -0.41
PDLIM5-201ENST00000317968 ITGAEP38570 1179 aa12.43□□□□□ -0.42
PDLIM5-201ENST00000317968 KIAA0586Q9BVV6 1533 aa12.43□□□□□ -0.42
PDLIM5-201ENST00000317968 JPH4Q96JJ6 628 aa12.43□□□□□ -0.42
PDLIM5-201ENST00000317968 SYNJ2O15056 1496 aa12.42□□□□□ -0.42
PDLIM5-201ENST00000317968 KIF21AQ7Z4S6 1674 aa12.4□□□□□ -0.42
PDLIM5-201ENST00000317968 CASKIN1Q8WXD9 1431 aa12.4□□□□□ -0.43
PDLIM5-201ENST00000317968 SNAPC4Q5SXM2 1469 aa12.39□□□□□ -0.43
PDLIM5-201ENST00000317968 FHOD3Q2V2M9 1422 aa12.39□□□□□ -0.43
PDLIM5-201ENST00000317968 CCDC18Q5T9S5 1454 aa12.39□□□□□ -0.43
PDLIM5-201ENST00000317968 ARHGAP35Q9NRY4 1499 aa12.39□□□□□ -0.43
PDLIM5-201ENST00000317968 FYCO1Q9BQS8 1478 aa12.38□□□□□ -0.43
PDLIM5-201ENST00000317968 CCNB3Q8WWL7 1395 aa12.38□□□□□ -0.43
PDLIM5-201ENST00000317968 MAP3K1Q13233 1512 aa12.37□□□□□ -0.43
PDLIM5-201ENST00000317968 PELP1Q8IZL8 1130 aaKnown RBP12.37□□□□□ -0.43
PDLIM5-201ENST00000317968 CLSPNQ9HAW4 1339 aa12.36□□□□□ -0.43
PDLIM5-201ENST00000317968 GRIN2AQ12879 1464 aa12.35□□□□□ -0.43
PDLIM5-201ENST00000317968 IQGAP2Q13576 1575 aa12.34□□□□□ -0.43
PDLIM5-201ENST00000317968 ABCA5Q8WWZ7 1642 aa12.34□□□□□ -0.43
PDLIM5-201ENST00000317968 ARAP1Q96P48 1450 aa12.33□□□□□ -0.44
PDLIM5-201ENST00000317968 PTPRGP23470 1445 aa12.33□□□□□ -0.44
PDLIM5-201ENST00000317968 TSPY4P0CV99 314 aa12.32□□□□□ -0.44
PDLIM5-201ENST00000317968 TSPY10P0CW01 314 aa12.32□□□□□ -0.44
PDLIM5-201ENST00000317968 ADAMTS12P58397 1594 aa12.3□□□□□ -0.44
PDLIM5-201ENST00000317968 OSCARQ8IYS5 282 aa12.3□□□□□ -0.44
PDLIM5-201ENST00000317968 TARBP1Q13395 1621 aaKnown RBP12.3□□□□□ -0.44
PDLIM5-201ENST00000317968 ZNF608Q9ULD9 1512 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-201ENST00000317968 CFDP1Q9UEE9 299 aaPredicted RBP12.29□□□□□ -0.44
PDLIM5-201ENST00000317968 RSPH4AQ5TD94 716 aa12.28□□□□□ -0.44
PDLIM5-201ENST00000317968 ARID3CA6NKF2 412 aa12.27□□□□□ -0.44
PDLIM5-201ENST00000317968 TRIM52Q96A61 297 aa12.27□□□□□ -0.45
PDLIM5-201ENST00000317968 THOC2Q8NI27 1593 aaKnown RBP12.26□□□□□ -0.45
PDLIM5-201ENST00000317968 LRRC9Q6ZRR7 1453 aa12.25□□□□□ -0.45
PDLIM5-201ENST00000317968 KANK4Q5T7N3 995 aaPredicted RBP12.25□□□□□ -0.45
PDLIM5-201ENST00000317968 HECW1Q76N89 1606 aa12.25□□□□□ -0.45
PDLIM5-201ENST00000317968 ZNF777Q9ULD5 760 aaPredicted RBP12.25□□□□□ -0.45
PDLIM5-201ENST00000317968 BCANQ96GW7 911 aa12.25□□□□□ -0.45
PDLIM5-201ENST00000317968 EIF4G3O43432 1585 aaKnown RBP12.24□□□□□ -0.45
PDLIM5-201ENST00000317968 UGGT2Q9NYU1 1516 aa12.24□□□□□ -0.45
PDLIM5-201ENST00000317968 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.23□□□□□ -0.45
PDLIM5-201ENST00000317968 CTTNBP2Q8WZ74 1663 aa12.22□□□□□ -0.45
PDLIM5-201ENST00000317968 PRG4Q92954 1404 aaPredicted RBP12.22□□□□□ -0.45
PDLIM5-201ENST00000317968 TIAM1Q13009 1591 aa12.22□□□□□ -0.45
PDLIM5-201ENST00000317968 EHBP1L1Q8N3D4 1523 aa12.22□□□□□ -0.45
PDLIM5-201ENST00000317968 NUP160Q12769 1436 aa12.21□□□□□ -0.46
PDLIM5-201ENST00000317968 TIMELESSQ9UNS1 1208 aa12.21□□□□□ -0.46
PDLIM5-201ENST00000317968 PBRM1Q86U86 1689 aa12.2□□□□□ -0.46
PDLIM5-201ENST00000317968 MYOM3Q5VTT5 1437 aa12.19□□□□□ -0.46
PDLIM5-201ENST00000317968 RRBP1Q9P2E9 1410 aaKnown RBP12.19□□□□□ -0.46
PDLIM5-201ENST00000317968 SETD5Q9C0A6 1442 aa12.18□□□□□ -0.46
PDLIM5-201ENST00000317968 MIA2Q96PC5 1412 aa12.18□□□□□ -0.46
PDLIM5-201ENST00000317968 EFCAB2Q5VUJ9 269 aa12.17□□□□□ -0.46
PDLIM5-201ENST00000317968 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-201ENST00000317968 TROQ12816 1431 aaPredicted RBP12.16□□□□□ -0.46
PDLIM5-201ENST00000317968 FGD6Q6ZV73 1430 aa12.15□□□□□ -0.46
PDLIM5-201ENST00000317968 STAG3Q9UJ98 1225 aa12.14□□□□□ -0.47
PDLIM5-201ENST00000317968 EPRSP07814 1512 aaKnown RBP12.14□□□□□ -0.47
PDLIM5-201ENST00000317968 UACAQ9BZF9 1416 aa12.14□□□□□ -0.47
PDLIM5-201ENST00000317968 KCNH8Q96L42 1107 aa12.13□□□□□ -0.47
PDLIM5-201ENST00000317968 NCOA2Q15596 1464 aa12.13□□□□□ -0.47
PDLIM5-201ENST00000317968 ANKRD30AQ9BXX3 1397 aa12.12□□□□□ -0.47
PDLIM5-201ENST00000317968 PCF11O94913 1555 aaKnown RBP12.12□□□□□ -0.47
PDLIM5-201ENST00000317968 TONSLQ96HA7 1378 aa12.12□□□□□ -0.47
PDLIM5-201ENST00000317968 SAMD9Q5K651 1589 aa12.11□□□□□ -0.47
PDLIM5-201ENST00000317968 TRHP20396 242 aaPredicted RBP12.11□□□□□ -0.47
PDLIM5-201ENST00000317968 CHIC2Q9UKJ5 165 aa12.1□□□□□ -0.47
PDLIM5-201ENST00000317968 SUPT6HQ7KZ85 1726 aaKnown RBP12.1□□□□□ -0.47
PDLIM5-201ENST00000317968 PLEKHH2Q8IVE3 1493 aa12.09□□□□□ -0.47
PDLIM5-201ENST00000317968 KIAA0556O60303 1618 aa12.09□□□□□ -0.47
PDLIM5-201ENST00000317968 PHLDB1Q86UU1 1377 aa12.08□□□□□ -0.48
PDLIM5-201ENST00000317968 RRP7BPQ9NSQ0 103 aa12.06□□□□□ -0.48
PDLIM5-201ENST00000317968 ZNF316A6NFI3 1004 aaPredicted RBP12.06□□□□□ -0.48
PDLIM5-201ENST00000317968 POLR3GLQ9BT43 218 aa12.06□□□□□ -0.48
PDLIM5-201ENST00000317968 NEUROD1Q13562 356 aa12.05□□□□□ -0.48
PDLIM5-201ENST00000317968 RAB3GAP2Q9H2M9 1393 aa12.04□□□□□ -0.48
PDLIM5-201ENST00000317968 RAPGEF6Q8TEU7 1601 aa12.04□□□□□ -0.48
PDLIM5-201ENST00000317968 CENPBP07199 599 aaPredicted RBP12.03□□□□□ -0.48
PDLIM5-201ENST00000317968 PLPPR3Q6T4P5 718 aa12.02□□□□□ -0.48
PDLIM5-201ENST00000317968 DISP1Q96F81 1524 aa12.02□□□□□ -0.48
PDLIM5-201ENST00000317968 CFAP43Q8NDM7 1665 aa12.02□□□□□ -0.49
PDLIM5-201ENST00000317968 KANK1Q14678 1352 aa12□□□□□ -0.49
PDLIM5-201ENST00000317968 PLB1Q6P1J6 1458 aa11.99□□□□□ -0.49
PDLIM5-201ENST00000317968 ROCK1Q13464 1354 aa11.99□□□□□ -0.49
PDLIM5-201ENST00000317968 ARID4BQ4LE39 1312 aaPredicted RBP11.99□□□□□ -0.49
PDLIM5-201ENST00000317968 AKNAQ7Z591 1439 aa11.99□□□□□ -0.49
PDLIM5-201ENST00000317968 CEP170Q5SW79 1584 aa11.98□□□□□ -0.49
PDLIM5-201ENST00000317968 NUP153P49790 1475 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms