RNA–Protein interactions for RNA: ENST00000315684.12

CTC1-201, Transcript of CST telomere replication complex component 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CTC1, Length 7,021 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1-201ENST00000315684 HIRIP3Q9BW71 556 aaPredicted RBP12.43□□□□□ -0.42
CTC1-201ENST00000315684 TDRD9Q8NDG6 1382 aaKnown RBP12.42□□□□□ -0.42
CTC1-201ENST00000315684 TONSLQ96HA7 1378 aa12.42□□□□□ -0.42
CTC1-201ENST00000315684 GGT6Q6P531 493 aa12.4□□□□□ -0.42
CTC1-201ENST00000315684 PPM1GO15355 546 aaPredicted RBP12.39□□□□□ -0.43
CTC1-201ENST00000315684 CUX2O14529 1486 aa12.38□□□□□ -0.43
CTC1-201ENST00000315684 KIF27Q86VH2 1401 aa12.38□□□□□ -0.43
CTC1-201ENST00000315684 PDS5BQ9NTI5 1447 aa12.38□□□□□ -0.43
CTC1-201ENST00000315684 SMARCA2P51531 1590 aa12.38□□□□□ -0.43
CTC1-201ENST00000315684 BAZ1AQ9NRL2 1556 aaPredicted RBP12.37□□□□□ -0.43
CTC1-201ENST00000315684 SOX12O15370 315 aa12.37□□□□□ -0.43
CTC1-201ENST00000315684 CLIP1P30622 1438 aa12.36□□□□□ -0.43
CTC1-201ENST00000315684 SENP3-EIF4A1A0A087X0R7 540 aa12.36□□□□□ -0.43
CTC1-201ENST00000315684 SAFB2Q14151 953 aaKnown RBP eCLIP12.34□□□□□ -0.43
CTC1-201ENST00000315684 NPM2Q86SE8 214 aaKnown RBP12.34□□□□□ -0.43
CTC1-201ENST00000315684 SOGA1O94964 1423 aa12.32□□□□□ -0.44
CTC1-201ENST00000315684 ZNF316A6NFI3 1004 aaPredicted RBP12.31□□□□□ -0.44
CTC1-201ENST00000315684 POGKQ9P215 609 aa12.31□□□□□ -0.44
CTC1-201ENST00000315684 FAM9BQ8IZU0 186 aa12.3□□□□□ -0.44
CTC1-201ENST00000315684 DCAF1Q9Y4B6 1507 aa12.3□□□□□ -0.44
CTC1-201ENST00000315684 CARMIL1Q5VZK9 1371 aa12.28□□□□□ -0.44
CTC1-201ENST00000315684 MROH2BQ7Z745 1585 aa12.28□□□□□ -0.44
CTC1-201ENST00000315684 OSCARQ8IYS5 282 aa12.28□□□□□ -0.44
CTC1-201ENST00000315684 DDX10Q13206 875 aaKnown RBP12.27□□□□□ -0.44
CTC1-201ENST00000315684 STK26Q9P289 416 aa12.27□□□□□ -0.45
CTC1-201ENST00000315684 NUTM2DQ5VT03 806 aaPredicted RBP12.27□□□□□ -0.45
CTC1-201ENST00000315684 TNNT2P45379 298 aaPredicted RBP12.26□□□□□ -0.45
CTC1-201ENST00000315684 NPHP1O15259 732 aa12.26□□□□□ -0.45
CTC1-201ENST00000315684 ABCC8Q09428 1581 aa12.25□□□□□ -0.45
CTC1-201ENST00000315684 CCDC88BA6NC98 1476 aa12.24□□□□□ -0.45
CTC1-201ENST00000315684 CCDC9Q9Y3X0 531 aaKnown RBP12.24□□□□□ -0.45
CTC1-201ENST00000315684 WIZO95785 1651 aa12.24□□□□□ -0.45
CTC1-201ENST00000315684 CCNB3Q8WWL7 1395 aa12.23□□□□□ -0.45
CTC1-201ENST00000315684 GOLGA3Q08378 1498 aa12.23□□□□□ -0.45
CTC1-201ENST00000315684 PAK3O75914 559 aaPredicted RBP12.21□□□□□ -0.45
CTC1-201ENST00000315684 CEP164Q9UPV0 1460 aa12.21□□□□□ -0.45
CTC1-201ENST00000315684 WDR43Q15061 677 aaKnown RBP eCLIP12.21□□□□□ -0.45
CTC1-201ENST00000315684 CARMIL2Q6F5E8 1435 aa12.19□□□□□ -0.46
CTC1-201ENST00000315684 CEP162Q5TB80 1403 aa12.18□□□□□ -0.46
CTC1-201ENST00000315684 NUTM2FA1L443 756 aa12.17□□□□□ -0.46
CTC1-201ENST00000315684 FAM69CQ0P6D2 419 aa12.17□□□□□ -0.46
CTC1-201ENST00000315684 LAS1LQ9Y4W2 734 aaKnown RBP12.17□□□□□ -0.46
CTC1-201ENST00000315684 JPH4Q96JJ6 628 aa12.17□□□□□ -0.46
CTC1-201ENST00000315684 HNRNPMP52272 730 aaKnown RBP eCLIP12.16□□□□□ -0.464e-6■□□□□ 9.5
CTC1-201ENST00000315684 CADPSQ9ULU8 1353 aa12.16□□□□□ -0.46
CTC1-201ENST00000315684 FOXD1Q16676 465 aa12.15□□□□□ -0.46
CTC1-201ENST00000315684 KANK1Q14678 1352 aa12.15□□□□□ -0.47
CTC1-201ENST00000315684 SRPK2P78362 688 aaKnown RBP12.13□□□□□ -0.47
CTC1-201ENST00000315684 NEUROD2Q15784 382 aa12.13□□□□□ -0.47
CTC1-201ENST00000315684 KIF3BO15066 747 aa12.13□□□□□ -0.47
CTC1-201ENST00000315684 CARD11Q9BXL7 1154 aa12.12□□□□□ -0.47
CTC1-201ENST00000315684 HNRNPUQ00839 825 aaKnown RBP eCLIP12.11□□□□□ -0.47
CTC1-201ENST00000315684 FANCD2Q9BXW9 1451 aa12.11□□□□□ -0.47
CTC1-201ENST00000315684 DNAJC5BQ9UF47 199 aa12.11□□□□□ -0.47
CTC1-201ENST00000315684 DCAF11Q8TEB1 546 aa12.11□□□□□ -0.47
CTC1-201ENST00000315684 HDGFP51858 240 aaKnown RBP12.11□□□□□ -0.47
CTC1-201ENST00000315684 EFCAB2Q5VUJ9 269 aa12.09□□□□□ -0.47
CTC1-201ENST00000315684 SIN3AQ96ST3 1273 aa12.08□□□□□ -0.48
CTC1-201ENST00000315684 CSB-PGBD3P0DP91 1061 aa12.08□□□□□ -0.48
CTC1-201ENST00000315684 PHF23Q9BUL5 403 aaPredicted RBP12.08□□□□□ -0.48
CTC1-201ENST00000315684 ATAD2BQ9ULI0 1458 aa12.08□□□□□ -0.48
CTC1-201ENST00000315684 MYO15BQ96JP2 1530 aa12.08□□□□□ -0.48
CTC1-201ENST00000315684 CC2D1BQ5T0F9 858 aaKnown RBP12.06□□□□□ -0.48
CTC1-201ENST00000315684 WASHC2CQ9Y4E1 1318 aa12.06□□□□□ -0.48
CTC1-201ENST00000315684 EIF4G2P78344 907 aaKnown RBP eCLIP12.05□□□□□ -0.48
CTC1-201ENST00000315684 MRS2Q9HD23 443 aa12.05□□□□□ -0.48
CTC1-201ENST00000315684 ZNF330Q9Y3S2 320 aaPredicted RBP12.05□□□□□ -0.48
CTC1-201ENST00000315684 EEA1Q15075 1411 aa12.05□□□□□ -0.48
CTC1-201ENST00000315684 U2SURPO15042 1029 aaKnown RBP12.05□□□□□ -0.48
CTC1-201ENST00000315684 KNSTRNQ9Y448 316 aa12.04□□□□□ -0.48
CTC1-201ENST00000315684 EID1Q9Y6B2 187 aa12.04□□□□□ -0.48
CTC1-201ENST00000315684 MEX3CQ5U5Q3 659 aaKnown RBP12.03□□□□□ -0.48
CTC1-201ENST00000315684 TAOK2Q9UL54 1235 aa12.03□□□□□ -0.48
CTC1-201ENST00000315684 SPAG9O60271 1321 aaKnown RBP12.01□□□□□ -0.49
CTC1-201ENST00000315684 AQRO60306 1485 aaKnown RBP eCLIP12.01□□□□□ -0.496e-6■■■■□ 25.1
CTC1-201ENST00000315684 FHOD3Q2V2M9 1422 aa12.01□□□□□ -0.49
CTC1-201ENST00000315684 TULP1O00294 542 aaPredicted RBP12.01□□□□□ -0.49
CTC1-201ENST00000315684 SMARCA4P51532 1647 aa12.01□□□□□ -0.49
CTC1-201ENST00000315684 RAD54L2Q9Y4B4 1467 aa12□□□□□ -0.49
CTC1-201ENST00000315684 NESP48681 1621 aa12□□□□□ -0.49
CTC1-201ENST00000315684 PKD2Q13563 968 aa11.99□□□□□ -0.49
CTC1-201ENST00000315684 IRX6P78412 446 aaPredicted RBP11.99□□□□□ -0.49
CTC1-201ENST00000315684 KANK4Q5T7N3 995 aaPredicted RBP11.99□□□□□ -0.49
CTC1-201ENST00000315684 CFAP53Q96M91 514 aa11.99□□□□□ -0.49
CTC1-201ENST00000315684 FHAD1B1AJZ9 1412 aa11.98□□□□□ -0.49
CTC1-201ENST00000315684 PTPRGP23470 1445 aa11.98□□□□□ -0.49
CTC1-201ENST00000315684 TOP2AP11388 1531 aaKnown RBP11.98□□□□□ -0.49
CTC1-201ENST00000315684 CC2D2AQ9P2K1 1620 aa11.97□□□□□ -0.49
CTC1-201ENST00000315684 LTV1Q96GA3 475 aaPredicted RBP11.97□□□□□ -0.49
CTC1-201ENST00000315684 TNIKQ9UKE5 1360 aa11.96□□□□□ -0.49
CTC1-201ENST00000315684 HSP90AA1P07900 732 aaKnown RBP11.95□□□□□ -0.5
CTC1-201ENST00000315684 PRDM2Q13029 1718 aa11.95□□□□□ -0.5
CTC1-201ENST00000315684 MAPK8IP3Q9UPT6 1336 aa11.95□□□□□ -0.5
CTC1-201ENST00000315684 NGDNQ8NEJ9 315 aaKnown RBP11.94□□□□□ -0.5
CTC1-201ENST00000315684 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.94□□□□□ -0.5
CTC1-201ENST00000315684 CDCA8Q53HL2 280 aa11.93□□□□□ -0.5
CTC1-201ENST00000315684 MYH16Q9H6N6 1097 aa11.93□□□□□ -0.5
CTC1-201ENST00000315684 NUP155O75694 1391 aa11.93□□□□□ -0.5
CTC1-201ENST00000315684 MSH5O43196 834 aa11.92□□□□□ -0.5
CTC1-201ENST00000315684 RTL5Q5HYW3 569 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms