RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 CUL7Q14999 1698 aa20.35■□□□□ 0.85
SCFD1-201ENST00000311943 EHMT2Q96KQ7 1210 aa20.3■□□□□ 0.84
SCFD1-201ENST00000311943 JPH4Q96JJ6 628 aa20.29■□□□□ 0.84
SCFD1-201ENST00000311943 RAPGEF2Q9Y4G8 1499 aa20.25■□□□□ 0.83
SCFD1-201ENST00000311943 PRG4Q92954 1404 aaPredicted RBP20.25■□□□□ 0.83
SCFD1-201ENST00000311943 SHROOM2Q13796 1616 aa20.24■□□□□ 0.83
SCFD1-201ENST00000311943 CSRNP3Q8WYN3 585 aa20.24■□□□□ 0.83
SCFD1-201ENST00000311943 PRXQ9BXM0 1461 aa20.21■□□□□ 0.83
SCFD1-201ENST00000311943 TTBK1Q5TCY1 1321 aaPredicted RBP20.21■□□□□ 0.83
SCFD1-201ENST00000311943 KIAA0586Q9BVV6 1533 aa20.21■□□□□ 0.83
SCFD1-201ENST00000311943 RANGAP1P46060 587 aaPredicted RBP20.12■□□□□ 0.81
SCFD1-201ENST00000311943 IQGAP2Q13576 1575 aa20.11■□□□□ 0.81
SCFD1-201ENST00000311943 DISP1Q96F81 1524 aa20.06■□□□□ 0.8
SCFD1-201ENST00000311943 EEA1Q15075 1411 aa20.05■□□□□ 0.8
SCFD1-201ENST00000311943 CTTNBP2Q8WZ74 1663 aa20.04■□□□□ 0.8
SCFD1-201ENST00000311943 P3H3Q8IVL6 736 aa20.03■□□□□ 0.8
SCFD1-201ENST00000311943 UGGT2Q9NYU1 1516 aa19.98■□□□□ 0.79
SCFD1-201ENST00000311943 TRHP20396 242 aaPredicted RBP19.97■□□□□ 0.79
SCFD1-201ENST00000311943 PTPRGP23470 1445 aa19.97■□□□□ 0.79
SCFD1-201ENST00000311943 KIAA0556O60303 1618 aa19.95■□□□□ 0.78
SCFD1-201ENST00000311943 KIF21BO75037 1637 aa19.94■□□□□ 0.78
SCFD1-201ENST00000311943 CARMIL2Q6F5E8 1435 aa19.94■□□□□ 0.78
SCFD1-201ENST00000311943 ADCY10Q96PN6 1610 aa19.94■□□□□ 0.78
SCFD1-201ENST00000311943 TNIKQ9UKE5 1360 aa19.94■□□□□ 0.78
SCFD1-201ENST00000311943 UBTFP17480 764 aaKnown RBP19.93■□□□□ 0.78
SCFD1-201ENST00000311943 ARID3CA6NKF2 412 aa19.87■□□□□ 0.77
SCFD1-201ENST00000311943 PLB1Q6P1J6 1458 aa19.87■□□□□ 0.77
SCFD1-201ENST00000311943 GOLGA3Q08378 1498 aa19.85■□□□□ 0.77
SCFD1-201ENST00000311943 FHOD3Q2V2M9 1422 aa19.82■□□□□ 0.76
SCFD1-201ENST00000311943 UACAQ9BZF9 1416 aa19.81■□□□□ 0.76
SCFD1-201ENST00000311943 LOC105371045A0A1W2PR82 267 aa19.8■□□□□ 0.76
SCFD1-201ENST00000311943 SAMD9Q5K651 1589 aa19.8■□□□□ 0.76
SCFD1-201ENST00000311943 NPM1P06748 294 aaKnown RBP eCLIP19.77■□□□□ 0.76
SCFD1-201ENST00000311943 ABCC2Q92887 1545 aa19.75■□□□□ 0.75
SCFD1-201ENST00000311943 ABCA8O94911 1581 aa19.73■□□□□ 0.75
SCFD1-201ENST00000311943 UHRF1BP1LA0JNW5 1464 aa19.71■□□□□ 0.75
SCFD1-201ENST00000311943 ARHGAP35Q9NRY4 1499 aa19.71■□□□□ 0.75
SCFD1-201ENST00000311943 FAM69CQ0P6D2 419 aa19.71■□□□□ 0.75
SCFD1-201ENST00000311943 KIF13AQ9H1H9 1805 aa19.7■□□□□ 0.74
SCFD1-201ENST00000311943 ZCCHC11Q5TAX3 1644 aaKnown RBP19.7■□□□□ 0.74
SCFD1-201ENST00000311943 ASXL2Q76L83 1435 aa19.69■□□□□ 0.74
SCFD1-201ENST00000311943 MAPKBP1O60336 1514 aa19.68■□□□□ 0.74
SCFD1-201ENST00000311943 KDM5BQ9UGL1 1544 aa19.68■□□□□ 0.74
SCFD1-201ENST00000311943 ABCC10Q5T3U5 1492 aa19.65■□□□□ 0.74
SCFD1-201ENST00000311943 DIP2BQ9P265 1576 aa19.65■□□□□ 0.74
SCFD1-201ENST00000311943 ATP10BO94823 1461 aa19.63■□□□□ 0.73
SCFD1-201ENST00000311943 EFCAB5A4FU69 1503 aa19.62■□□□□ 0.73
SCFD1-201ENST00000311943 KCNH8Q96L42 1107 aa19.62■□□□□ 0.73
SCFD1-201ENST00000311943 ATP1B4Q9UN42 357 aaPredicted RBP19.62■□□□□ 0.73
SCFD1-201ENST00000311943 RAPGEF6Q8TEU7 1601 aa19.62■□□□□ 0.73
SCFD1-201ENST00000311943 NUP153P49790 1475 aaKnown RBP19.62■□□□□ 0.73
SCFD1-201ENST00000311943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.59■□□□□ 0.73
SCFD1-201ENST00000311943 HNRNPUL2Q1KMD3 747 aaKnown RBP19.59■□□□□ 0.73
SCFD1-201ENST00000311943 TSPOAP1O95153 1857 aa19.58■□□□□ 0.73
SCFD1-201ENST00000311943 CLIP1P30622 1438 aa19.55■□□□□ 0.72
SCFD1-201ENST00000311943 CDK13Q14004 1512 aaKnown RBP19.55■□□□□ 0.72
SCFD1-201ENST00000311943 EPRSP07814 1512 aaKnown RBP19.55■□□□□ 0.72
SCFD1-201ENST00000311943 WDR7Q9Y4E6 1490 aa19.53■□□□□ 0.72
SCFD1-201ENST00000311943 CEP162Q5TB80 1403 aa19.5■□□□□ 0.71
SCFD1-201ENST00000311943 LRRIQ1Q96JM4 1722 aa19.49■□□□□ 0.71
SCFD1-201ENST00000311943 PPRC1Q5VV67 1664 aaKnown RBP19.47■□□□□ 0.71
SCFD1-201ENST00000311943 PCF11O94913 1555 aaKnown RBP19.47■□□□□ 0.71
SCFD1-201ENST00000311943 FMN1Q68DA7 1419 aa19.46■□□□□ 0.71
SCFD1-201ENST00000311943 GLI2P10070 1586 aa19.43■□□□□ 0.7
SCFD1-201ENST00000311943 MAP3K4Q9Y6R4 1608 aa19.42■□□□□ 0.7
SCFD1-201ENST00000311943 COL17A1Q9UMD9 1497 aaPredicted RBP19.4■□□□□ 0.7
SCFD1-201ENST00000311943 PLEKHD1A6NEE1 506 aa19.4■□□□□ 0.7
SCFD1-201ENST00000311943 HECW1Q76N89 1606 aa19.39■□□□□ 0.69
SCFD1-201ENST00000311943 CD109Q6YHK3 1445 aa19.39■□□□□ 0.69
SCFD1-201ENST00000311943 CASKIN1Q8WXD9 1431 aa19.37■□□□□ 0.69
SCFD1-201ENST00000311943 MAGI3Q5TCQ9 1506 aa19.36■□□□□ 0.69
SCFD1-201ENST00000311943 TTC37Q6PGP7 1564 aa19.32■□□□□ 0.68
SCFD1-201ENST00000311943 KIF14Q15058 1648 aa19.32■□□□□ 0.68
SCFD1-201ENST00000311943 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.32■□□□□ 0.68
SCFD1-201ENST00000311943 KDM6BO15054 1643 aa19.31■□□□□ 0.68
SCFD1-201ENST00000311943 ABCA9Q8IUA7 1624 aa19.31■□□□□ 0.68
SCFD1-201ENST00000311943 CFAP43Q8NDM7 1665 aa19.3■□□□□ 0.68
SCFD1-201ENST00000311943 FYCO1Q9BQS8 1478 aa19.29■□□□□ 0.68
SCFD1-201ENST00000311943 TROQ12816 1431 aaPredicted RBP19.24■□□□□ 0.67
SCFD1-201ENST00000311943 RAPGEF3O95398 923 aa19.23■□□□□ 0.67
SCFD1-201ENST00000311943 TEX14Q8IWB6 1497 aa19.22■□□□□ 0.67
SCFD1-201ENST00000311943 CCDC18Q5T9S5 1454 aa19.21■□□□□ 0.67
SCFD1-201ENST00000311943 CDK11AQ9UQ88 783 aaPredicted RBP19.21■□□□□ 0.67
SCFD1-201ENST00000311943 VPS8Q8N3P4 1428 aa19.2■□□□□ 0.66
SCFD1-201ENST00000311943 KANK4Q5T7N3 995 aaPredicted RBP19.18■□□□□ 0.66
SCFD1-201ENST00000311943 FANCAO15360 1455 aa19.16■□□□□ 0.66
SCFD1-201ENST00000311943 PLCH2O75038 1416 aa19.15■□□□□ 0.66
SCFD1-201ENST00000311943 MTUS2Q5JR59 1369 aa19.13■□□□□ 0.65
SCFD1-201ENST00000311943 AKNAQ7Z591 1439 aa19.13■□□□□ 0.65
SCFD1-201ENST00000311943 CDC42BPBQ9Y5S2 1711 aa19.11■□□□□ 0.65
SCFD1-201ENST00000311943 MYO5CQ9NQX4 1742 aa19.1■□□□□ 0.65
SCFD1-201ENST00000311943 FRMPD1Q5SYB0 1578 aa19.1■□□□□ 0.65
SCFD1-201ENST00000311943 TIAM1Q13009 1591 aa19.1■□□□□ 0.65
SCFD1-201ENST00000311943 ARAP3Q8WWN8 1544 aa19.1■□□□□ 0.65
SCFD1-201ENST00000311943 ZNF777Q9ULD5 760 aaPredicted RBP19.1■□□□□ 0.65
SCFD1-201ENST00000311943 ARHGAP5Q13017 1502 aa19.09■□□□□ 0.65
SCFD1-201ENST00000311943 NEO1Q92859 1461 aa19.09■□□□□ 0.65
SCFD1-201ENST00000311943 CDC42BPAQ5VT25 1732 aa19.08■□□□□ 0.65
SCFD1-201ENST00000311943 ZNF644Q9H582 1327 aaPredicted RBP19.07■□□□□ 0.64
SCFD1-201ENST00000311943 GPATCH8Q9UKJ3 1502 aaKnown RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms