RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 RUSC2Q8N2Y8 1516 aa28.09■■■□□ 2.09
LSM1-201ENST00000311351 CARMIL1Q5VZK9 1371 aa27.95■■■□□ 2.06
LSM1-201ENST00000311351 PRG4Q92954 1404 aaPredicted RBP27.94■■■□□ 2.06
LSM1-201ENST00000311351 KIAA0586Q9BVV6 1533 aa27.89■■■□□ 2.06
LSM1-201ENST00000311351 JPH4Q96JJ6 628 aa27.89■■■□□ 2.06
LSM1-201ENST00000311351 TRHP20396 242 aaPredicted RBP27.79■■■□□ 2.04
LSM1-201ENST00000311351 RAPGEF2Q9Y4G8 1499 aa27.77■■■□□ 2.04
LSM1-201ENST00000311351 IQGAP2Q13576 1575 aa27.76■■■□□ 2.03
LSM1-201ENST00000311351 CTTNBP2Q8WZ74 1663 aa27.64■■■□□ 2.02
LSM1-201ENST00000311351 ADCY10Q96PN6 1610 aa27.63■■■□□ 2.01
LSM1-201ENST00000311351 PRXQ9BXM0 1461 aa27.62■■■□□ 2.01
LSM1-201ENST00000311351 CARMIL2Q6F5E8 1435 aa27.58■■■□□ 2
LSM1-201ENST00000311351 DISP1Q96F81 1524 aa27.57■■■□□ 2
LSM1-201ENST00000311351 UGGT2Q9NYU1 1516 aa27.57■■■□□ 2
LSM1-201ENST00000311351 PTPRGP23470 1445 aa27.53■■■□□ 2
LSM1-201ENST00000311351 TNIKQ9UKE5 1360 aa27.53■■■□□ 2
LSM1-201ENST00000311351 TTBK1Q5TCY1 1321 aaPredicted RBP27.53■■■□□ 2
LSM1-201ENST00000311351 KIAA0556O60303 1618 aa27.52■■■□□ 2
LSM1-201ENST00000311351 KIF13AQ9H1H9 1805 aa27.5■■□□□ 1.99
LSM1-201ENST00000311351 MAPKBP1O60336 1514 aa27.46■■□□□ 1.99
LSM1-201ENST00000311351 EEA1Q15075 1411 aa27.44■■□□□ 1.98
LSM1-201ENST00000311351 CSRNP3Q8WYN3 585 aa27.44■■□□□ 1.98
LSM1-201ENST00000311351 NPM1P06748 294 aaKnown RBP eCLIP27.41■■□□□ 1.98
LSM1-201ENST00000311351 FAM9AQ8IZU1 332 aaPredicted RBP27.37■■□□□ 1.97
LSM1-201ENST00000311351 DIP2BQ9P265 1576 aa27.37■■□□□ 1.97
LSM1-201ENST00000311351 ABCC2Q92887 1545 aa27.36■■□□□ 1.97
LSM1-201ENST00000311351 UACAQ9BZF9 1416 aa27.35■■□□□ 1.97
LSM1-201ENST00000311351 UHRF1BP1LA0JNW5 1464 aa27.35■■□□□ 1.97
LSM1-201ENST00000311351 GOLGA3Q08378 1498 aa27.35■■□□□ 1.97
LSM1-201ENST00000311351 ABCC10Q5T3U5 1492 aa27.35■■□□□ 1.97
LSM1-201ENST00000311351 KIF21BO75037 1637 aa27.28■■□□□ 1.96
LSM1-201ENST00000311351 FAM69CQ0P6D2 419 aa27.26■■□□□ 1.95
LSM1-201ENST00000311351 ZCCHC11Q5TAX3 1644 aaKnown RBP27.26■■□□□ 1.95
LSM1-201ENST00000311351 PLB1Q6P1J6 1458 aa27.25■■□□□ 1.95
LSM1-201ENST00000311351 KDM5BQ9UGL1 1544 aa27.24■■□□□ 1.95
LSM1-201ENST00000311351 SAMD9Q5K651 1589 aa27.23■■□□□ 1.95
LSM1-201ENST00000311351 ASXL2Q76L83 1435 aa27.23■■□□□ 1.95
LSM1-201ENST00000311351 ABCA8O94911 1581 aa27.22■■□□□ 1.95
LSM1-201ENST00000311351 TSPOAP1O95153 1857 aa27.19■■□□□ 1.94
LSM1-201ENST00000311351 P3H3Q8IVL6 736 aa27.16■■□□□ 1.94
LSM1-201ENST00000311351 RANGAP1P46060 587 aaPredicted RBP27.1■■□□□ 1.93
LSM1-201ENST00000311351 GLI2P10070 1586 aa27.09■■□□□ 1.93
LSM1-201ENST00000311351 EHMT2Q96KQ7 1210 aa27.08■■□□□ 1.93
LSM1-201ENST00000311351 EPRSP07814 1512 aaKnown RBP27.07■■□□□ 1.92
LSM1-201ENST00000311351 PPRC1Q5VV67 1664 aaKnown RBP27.06■■□□□ 1.92
LSM1-201ENST00000311351 FHOD3Q2V2M9 1422 aa27.05■■□□□ 1.92
LSM1-201ENST00000311351 WDR7Q9Y4E6 1490 aa27.05■■□□□ 1.92
LSM1-201ENST00000311351 RAPGEF6Q8TEU7 1601 aa27.03■■□□□ 1.92
LSM1-201ENST00000311351 MAP3K4Q9Y6R4 1608 aa27.02■■□□□ 1.92
LSM1-201ENST00000311351 EFCAB5A4FU69 1503 aa27.01■■□□□ 1.91
LSM1-201ENST00000311351 KDM6BO15054 1643 aa27■■□□□ 1.91
LSM1-201ENST00000311351 ARID3CA6NKF2 412 aa26.99■■□□□ 1.91
LSM1-201ENST00000311351 UBTFP17480 764 aaKnown RBP26.96■■□□□ 1.91
LSM1-201ENST00000311351 ATP10BO94823 1461 aa26.94■■□□□ 1.9
LSM1-201ENST00000311351 NUP153P49790 1475 aaKnown RBP26.91■■□□□ 1.9
LSM1-201ENST00000311351 CFAP43Q8NDM7 1665 aa26.89■■□□□ 1.89
LSM1-201ENST00000311351 KCNH8Q96L42 1107 aa26.86■■□□□ 1.89
LSM1-201ENST00000311351 ARHGAP35Q9NRY4 1499 aa26.85■■□□□ 1.89
LSM1-201ENST00000311351 TEX14Q8IWB6 1497 aa26.84■■□□□ 1.89
LSM1-201ENST00000311351 CD109Q6YHK3 1445 aa26.79■■□□□ 1.88
LSM1-201ENST00000311351 MAGI3Q5TCQ9 1506 aa26.77■■□□□ 1.88
LSM1-201ENST00000311351 COL17A1Q9UMD9 1497 aaPredicted RBP26.77■■□□□ 1.88
LSM1-201ENST00000311351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.77■■□□□ 1.88
LSM1-201ENST00000311351 HNRNPUL2Q1KMD3 747 aaKnown RBP26.77■■□□□ 1.88
LSM1-201ENST00000311351 ABCA9Q8IUA7 1624 aa26.76■■□□□ 1.87
LSM1-201ENST00000311351 CDK13Q14004 1512 aaKnown RBP26.74■■□□□ 1.87
LSM1-201ENST00000311351 FMN1Q68DA7 1419 aa26.72■■□□□ 1.87
LSM1-201ENST00000311351 HECW1Q76N89 1606 aa26.71■■□□□ 1.87
LSM1-201ENST00000311351 LRRIQ1Q96JM4 1722 aa26.63■■□□□ 1.85
LSM1-201ENST00000311351 PCF11O94913 1555 aaKnown RBP26.6■■□□□ 1.85
LSM1-201ENST00000311351 TTC37Q6PGP7 1564 aa26.6■■□□□ 1.85
LSM1-201ENST00000311351 PLEKHD1A6NEE1 506 aa26.6■■□□□ 1.85
LSM1-201ENST00000311351 ATP1B4Q9UN42 357 aaPredicted RBP26.6■■□□□ 1.85
LSM1-201ENST00000311351 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.58■■□□□ 1.85
LSM1-201ENST00000311351 CLIP1P30622 1438 aa26.56■■□□□ 1.84
LSM1-201ENST00000311351 ARAP3Q8WWN8 1544 aa26.54■■□□□ 1.84
LSM1-201ENST00000311351 NEO1Q92859 1461 aa26.52■■□□□ 1.84
LSM1-201ENST00000311351 CASKIN1Q8WXD9 1431 aa26.49■■□□□ 1.83
LSM1-201ENST00000311351 KIF14Q15058 1648 aa26.49■■□□□ 1.83
LSM1-201ENST00000311351 FRMPD1Q5SYB0 1578 aa26.46■■□□□ 1.83
LSM1-201ENST00000311351 CFAP74Q9C0B2 1584 aa26.46■■□□□ 1.83
LSM1-201ENST00000311351 PHLDB1Q86UU1 1377 aa26.46■■□□□ 1.83
LSM1-201ENST00000311351 FYCO1Q9BQS8 1478 aa26.45■■□□□ 1.82
LSM1-201ENST00000311351 KDM4FA0A1W2PPD8 638 aa26.45■■□□□ 1.82
LSM1-201ENST00000311351 FANCAO15360 1455 aa26.43■■□□□ 1.82
LSM1-201ENST00000311351 CCDC18Q5T9S5 1454 aa26.43■■□□□ 1.82
LSM1-201ENST00000311351 TROQ12816 1431 aaPredicted RBP26.43■■□□□ 1.82
LSM1-201ENST00000311351 MYO5CQ9NQX4 1742 aa26.42■■□□□ 1.82
LSM1-201ENST00000311351 ADGRL1O94910 1474 aa26.42■■□□□ 1.82
LSM1-201ENST00000311351 CDK11AQ9UQ88 783 aaPredicted RBP26.4■■□□□ 1.82
LSM1-201ENST00000311351 CEP162Q5TB80 1403 aa26.39■■□□□ 1.81
LSM1-201ENST00000311351 RAPGEF3O95398 923 aa26.38■■□□□ 1.81
LSM1-201ENST00000311351 RICTORQ6R327 1708 aa26.38■■□□□ 1.81
LSM1-201ENST00000311351 AKNAQ7Z591 1439 aa26.38■■□□□ 1.81
LSM1-201ENST00000311351 PLCH2O75038 1416 aa26.35■■□□□ 1.81
LSM1-201ENST00000311351 DENND4BO75064 1496 aaPredicted RBP26.34■■□□□ 1.81
LSM1-201ENST00000311351 ARHGEF40Q8TER5 1519 aa26.28■■□□□ 1.8
LSM1-201ENST00000311351 LOC105371045A0A1W2PR82 267 aa26.27■■□□□ 1.8
LSM1-201ENST00000311351 ARHGAP5Q13017 1502 aa26.27■■□□□ 1.8
LSM1-201ENST00000311351 CDC42BPBQ9Y5S2 1711 aa26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms