RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PRG4Q92954 1404 aaPredicted RBP33.76■■■□□ 2.99
LIME1-201ENST00000309546 JPH4Q96JJ6 628 aa33.72■■■□□ 2.99
LIME1-201ENST00000309546 CARMIL1Q5VZK9 1371 aa33.61■■■□□ 2.97
LIME1-201ENST00000309546 KIAA0586Q9BVV6 1533 aa33.61■■■□□ 2.97
LIME1-201ENST00000309546 IQGAP2Q13576 1575 aa33.39■■■□□ 2.94
LIME1-201ENST00000309546 ADCY10Q96PN6 1610 aa33.37■■■□□ 2.93
LIME1-201ENST00000309546 RAPGEF2Q9Y4G8 1499 aa33.36■■■□□ 2.93
LIME1-201ENST00000309546 KIF13AQ9H1H9 1805 aa33.32■■■□□ 2.92
LIME1-201ENST00000309546 NPM1P06748 294 aaKnown RBP eCLIP33.31■■■□□ 2.92
LIME1-201ENST00000309546 TTBK1Q5TCY1 1321 aaPredicted RBP33.29■■■□□ 2.92
LIME1-201ENST00000309546 CARMIL2Q6F5E8 1435 aa33.29■■■□□ 2.92
LIME1-201ENST00000309546 PTPRGP23470 1445 aa33.26■■■□□ 2.91
LIME1-201ENST00000309546 MAPKBP1O60336 1514 aa33.23■■■□□ 2.91
LIME1-201ENST00000309546 TNIKQ9UKE5 1360 aa33.22■■■□□ 2.91
LIME1-201ENST00000309546 CTTNBP2Q8WZ74 1663 aa33.17■■■□□ 2.9
LIME1-201ENST00000309546 DISP1Q96F81 1524 aa33.17■■■□□ 2.9
LIME1-201ENST00000309546 ABCC10Q5T3U5 1492 aa33.15■■■□□ 2.9
LIME1-201ENST00000309546 UGGT2Q9NYU1 1516 aa33.15■■■□□ 2.9
LIME1-201ENST00000309546 DIP2BQ9P265 1576 aa33.13■■■□□ 2.89
LIME1-201ENST00000309546 FAM69CQ0P6D2 419 aa33.12■■■□□ 2.89
LIME1-201ENST00000309546 KIAA0556O60303 1618 aa33.1■■■□□ 2.89
LIME1-201ENST00000309546 PRXQ9BXM0 1461 aa33.06■■■□□ 2.88
LIME1-201ENST00000309546 ABCC2Q92887 1545 aa33.05■■■□□ 2.88
LIME1-201ENST00000309546 UACAQ9BZF9 1416 aa33.02■■■□□ 2.88
LIME1-201ENST00000309546 UHRF1BP1LA0JNW5 1464 aa32.99■■■□□ 2.87
LIME1-201ENST00000309546 TSPOAP1O95153 1857 aa32.97■■■□□ 2.87
LIME1-201ENST00000309546 GOLGA3Q08378 1498 aa32.93■■■□□ 2.86
LIME1-201ENST00000309546 ASXL2Q76L83 1435 aa32.92■■■□□ 2.86
LIME1-201ENST00000309546 PLB1Q6P1J6 1458 aa32.88■■■□□ 2.85
LIME1-201ENST00000309546 CSRNP3Q8WYN3 585 aa32.88■■■□□ 2.85
LIME1-201ENST00000309546 ZCCHC11Q5TAX3 1644 aaKnown RBP32.87■■■□□ 2.85
LIME1-201ENST00000309546 KDM5BQ9UGL1 1544 aa32.85■■■□□ 2.85
LIME1-201ENST00000309546 EEA1Q15075 1411 aa32.81■■■□□ 2.84
LIME1-201ENST00000309546 KDM6BO15054 1643 aa32.8■■■□□ 2.84
LIME1-201ENST00000309546 GLI2P10070 1586 aa32.78■■■□□ 2.84
LIME1-201ENST00000309546 ABCA8O94911 1581 aa32.75■■■□□ 2.83
LIME1-201ENST00000309546 FAM9AQ8IZU1 332 aaPredicted RBP32.74■■■□□ 2.83
LIME1-201ENST00000309546 AEBP2Q6ZN18 517 aaPredicted RBP32.72■■■□□ 2.83
LIME1-201ENST00000309546 EPRSP07814 1512 aaKnown RBP32.72■■■□□ 2.83
LIME1-201ENST00000309546 PPRC1Q5VV67 1664 aaKnown RBP32.71■■■□□ 2.83
LIME1-201ENST00000309546 P3H3Q8IVL6 736 aa32.69■■■□□ 2.82
LIME1-201ENST00000309546 WDR7Q9Y4E6 1490 aa32.65■■■□□ 2.82
LIME1-201ENST00000309546 SAMD9Q5K651 1589 aa32.65■■■□□ 2.82
LIME1-201ENST00000309546 MAP3K4Q9Y6R4 1608 aa32.65■■■□□ 2.82
LIME1-201ENST00000309546 KIF21BO75037 1637 aa32.59■■■□□ 2.81
LIME1-201ENST00000309546 RANGAP1P46060 587 aaPredicted RBP32.58■■■□□ 2.81
LIME1-201ENST00000309546 ARID3CA6NKF2 412 aa32.54■■■□□ 2.8
LIME1-201ENST00000309546 CHIC1Q5VXU3 224 aa32.54■■■□□ 2.8
LIME1-201ENST00000309546 TEX14Q8IWB6 1497 aa32.52■■■□□ 2.8
LIME1-201ENST00000309546 RAPGEF6Q8TEU7 1601 aa32.49■■■□□ 2.79
LIME1-201ENST00000309546 KCNH8Q96L42 1107 aa32.49■■■□□ 2.79
LIME1-201ENST00000309546 CFAP43Q8NDM7 1665 aa32.47■■■□□ 2.79
LIME1-201ENST00000309546 FHOD3Q2V2M9 1422 aa32.45■■■□□ 2.79
LIME1-201ENST00000309546 ATP10BO94823 1461 aa32.44■■■□□ 2.78
LIME1-201ENST00000309546 EHMT2Q96KQ7 1210 aa32.43■■■□□ 2.78
LIME1-201ENST00000309546 CD109Q6YHK3 1445 aa32.4■■■□□ 2.78
LIME1-201ENST00000309546 COL17A1Q9UMD9 1497 aaPredicted RBP32.4■■■□□ 2.78
LIME1-201ENST00000309546 EFCAB5A4FU69 1503 aa32.38■■■□□ 2.77
LIME1-201ENST00000309546 MAGI3Q5TCQ9 1506 aa32.36■■■□□ 2.77
LIME1-201ENST00000309546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.34■■■□□ 2.77
LIME1-201ENST00000309546 HNRNPUL2Q1KMD3 747 aaKnown RBP32.34■■■□□ 2.77
LIME1-201ENST00000309546 NUP153P49790 1475 aaKnown RBP32.32■■■□□ 2.76
LIME1-201ENST00000309546 UBTFP17480 764 aaKnown RBP32.32■■■□□ 2.76
LIME1-201ENST00000309546 ABCA9Q8IUA7 1624 aa32.26■■■□□ 2.75
LIME1-201ENST00000309546 KDM4FA0A1W2PPD8 638 aa32.23■■■□□ 2.75
LIME1-201ENST00000309546 ADGRL1O94910 1474 aa32.13■■■□□ 2.73
LIME1-201ENST00000309546 ARHGAP35Q9NRY4 1499 aa32.12■■■□□ 2.73
LIME1-201ENST00000309546 PLEKHD1A6NEE1 506 aa32.1■■■□□ 2.73
LIME1-201ENST00000309546 CDK13Q14004 1512 aaKnown RBP32.09■■■□□ 2.73
LIME1-201ENST00000309546 ARAP3Q8WWN8 1544 aa32.08■■■□□ 2.73
LIME1-201ENST00000309546 FMN1Q68DA7 1419 aa32.07■■■□□ 2.72
LIME1-201ENST00000309546 HECW1Q76N89 1606 aa32.06■■■□□ 2.72
LIME1-201ENST00000309546 ATP1B4Q9UN42 357 aaPredicted RBP32.04■■■□□ 2.72
LIME1-201ENST00000309546 NEO1Q92859 1461 aa32.03■■■□□ 2.72
LIME1-201ENST00000309546 PHLDB1Q86UU1 1377 aa32.02■■■□□ 2.72
LIME1-201ENST00000309546 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32■■■□□ 2.71
LIME1-201ENST00000309546 TTC37Q6PGP7 1564 aa31.98■■■□□ 2.71
LIME1-201ENST00000309546 RAPGEF3O95398 923 aa31.92■■■□□ 2.7
LIME1-201ENST00000309546 CFAP74Q9C0B2 1584 aa31.92■■■□□ 2.7
LIME1-201ENST00000309546 FRMPD1Q5SYB0 1578 aa31.9■■■□□ 2.7
LIME1-201ENST00000309546 FANCAO15360 1455 aa31.89■■■□□ 2.7
LIME1-201ENST00000309546 LRRIQ1Q96JM4 1722 aa31.88■■■□□ 2.69
LIME1-201ENST00000309546 AKNAQ7Z591 1439 aa31.84■■■□□ 2.69
LIME1-201ENST00000309546 PCF11O94913 1555 aaKnown RBP31.83■■■□□ 2.69
LIME1-201ENST00000309546 CDK11AQ9UQ88 783 aaPredicted RBP31.82■■■□□ 2.68
LIME1-201ENST00000309546 RICTORQ6R327 1708 aa31.82■■■□□ 2.68
LIME1-201ENST00000309546 DENND4BO75064 1496 aaPredicted RBP31.82■■■□□ 2.68
LIME1-201ENST00000309546 MYO5CQ9NQX4 1742 aa31.8■■■□□ 2.68
LIME1-201ENST00000309546 KIF14Q15058 1648 aa31.8■■■□□ 2.68
LIME1-201ENST00000309546 PLCH2O75038 1416 aa31.75■■■□□ 2.67
LIME1-201ENST00000309546 TROQ12816 1431 aaPredicted RBP31.75■■■□□ 2.67
LIME1-201ENST00000309546 CLIP1P30622 1438 aa31.75■■■□□ 2.67
LIME1-201ENST00000309546 CASKIN1Q8WXD9 1431 aa31.74■■■□□ 2.67
LIME1-201ENST00000309546 ARHGEF40Q8TER5 1519 aa31.73■■■□□ 2.67
LIME1-201ENST00000309546 CCDC18Q5T9S5 1454 aa31.71■■■□□ 2.67
LIME1-201ENST00000309546 ZMYM4Q5VZL5 1548 aa31.67■■■□□ 2.66
LIME1-201ENST00000309546 ARID4BQ4LE39 1312 aaPredicted RBP31.67■■■□□ 2.66
LIME1-201ENST00000309546 FYCO1Q9BQS8 1478 aa31.66■■■□□ 2.66
LIME1-201ENST00000309546 SCAPERQ9BY12 1400 aa31.66■■■□□ 2.66
LIME1-201ENST00000309546 ARHGAP5Q13017 1502 aa31.65■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms