RNA–Protein interactions for RNA: ENST00000305409.2

SCG2-201, Transcript of secretogranin II, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCG2, Length 2,576 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCG2-201ENST00000305409 TARBP1Q13395 1621 aaKnown RBP17.2■□□□□ 0.34
SCG2-201ENST00000305409 ERCC6Q03468 1493 aa17.2■□□□□ 0.34
SCG2-201ENST00000305409 ITGAEP38570 1179 aa17.2■□□□□ 0.34
SCG2-201ENST00000305409 CUL7Q14999 1698 aa17.18■□□□□ 0.34
SCG2-201ENST00000305409 ZNF608Q9ULD9 1512 aaPredicted RBP17.18■□□□□ 0.34
SCG2-201ENST00000305409 FHAD1B1AJZ9 1412 aa17.1■□□□□ 0.33
SCG2-201ENST00000305409 PCF11O94913 1555 aaKnown RBP17.09■□□□□ 0.33
SCG2-201ENST00000305409 WDR62O43379 1518 aa17.07■□□□□ 0.32
SCG2-201ENST00000305409 TIAM1Q13009 1591 aa17.07■□□□□ 0.32
SCG2-201ENST00000305409 CTTNBP2Q8WZ74 1663 aa17.07■□□□□ 0.32
SCG2-201ENST00000305409 IFT140Q96RY7 1462 aa17.06■□□□□ 0.32
SCG2-201ENST00000305409 ARID3CA6NKF2 412 aa17.06■□□□□ 0.32
SCG2-201ENST00000305409 GRIN2BQ13224 1484 aa17.06■□□□□ 0.32
SCG2-201ENST00000305409 FBLN2P98095 1184 aa17.05■□□□□ 0.32
SCG2-201ENST00000305409 CCNB3Q8WWL7 1395 aa17.05■□□□□ 0.32
SCG2-201ENST00000305409 LRRC9Q6ZRR7 1453 aa17.05■□□□□ 0.32
SCG2-201ENST00000305409 PHLDB1Q86UU1 1377 aa17.04■□□□□ 0.32
SCG2-201ENST00000305409 FAM50AQ14320 339 aaKnown RBP17.04■□□□□ 0.32
SCG2-201ENST00000305409 PBRM1Q86U86 1689 aa17.04■□□□□ 0.32
SCG2-201ENST00000305409 RRBP1Q9P2E9 1410 aaKnown RBP17.03■□□□□ 0.32
SCG2-201ENST00000305409 EFCAB5A4FU69 1503 aa17.02■□□□□ 0.32
SCG2-201ENST00000305409 CASKIN1Q8WXD9 1431 aa17.01■□□□□ 0.31
SCG2-201ENST00000305409 SNAPC4Q5SXM2 1469 aa17■□□□□ 0.31
SCG2-201ENST00000305409 ADAMTS12P58397 1594 aa16.99■□□□□ 0.31
SCG2-201ENST00000305409 FMN1Q68DA7 1419 aa16.99■□□□□ 0.31
SCG2-201ENST00000305409 FYCO1Q9BQS8 1478 aa16.97■□□□□ 0.31
SCG2-201ENST00000305409 CHMP7Q8WUX9 453 aaPredicted RBP16.97■□□□□ 0.31
SCG2-201ENST00000305409 THOC2Q8NI27 1593 aaKnown RBP16.96■□□□□ 0.31
SCG2-201ENST00000305409 MAP3K1Q13233 1512 aa16.96■□□□□ 0.3
SCG2-201ENST00000305409 EIF4G3O43432 1585 aaKnown RBP16.94■□□□□ 0.3
SCG2-201ENST00000305409 SAMD9Q5K651 1589 aa16.94■□□□□ 0.3
SCG2-201ENST00000305409 MTUS2Q5JR59 1369 aa16.93■□□□□ 0.3
SCG2-201ENST00000305409 IQGAP2Q13576 1575 aa16.91■□□□□ 0.3
SCG2-201ENST00000305409 CFAP43Q8NDM7 1665 aa16.9■□□□□ 0.3
SCG2-201ENST00000305409 DHX57Q6P158 1386 aaKnown RBP16.9■□□□□ 0.3
SCG2-201ENST00000305409 GRIN2AQ12879 1464 aa16.88■□□□□ 0.29
SCG2-201ENST00000305409 RAB3GAP2Q9H2M9 1393 aa16.85■□□□□ 0.29
SCG2-201ENST00000305409 LRRIQ1Q96JM4 1722 aa16.84■□□□□ 0.29
SCG2-201ENST00000305409 KIAA0586Q9BVV6 1533 aa16.83■□□□□ 0.29
SCG2-201ENST00000305409 CDK13Q14004 1512 aaKnown RBP16.81■□□□□ 0.28
SCG2-201ENST00000305409 SYNJ2O15056 1496 aa16.8■□□□□ 0.28
SCG2-201ENST00000305409 MAGI1Q96QZ7 1491 aaPredicted RBP16.8■□□□□ 0.28
SCG2-201ENST00000305409 DISP1Q96F81 1524 aa16.8■□□□□ 0.28
SCG2-201ENST00000305409 NCOA2Q15596 1464 aa16.8■□□□□ 0.28
SCG2-201ENST00000305409 MAGI3Q5TCQ9 1506 aa16.79■□□□□ 0.28
SCG2-201ENST00000305409 UGGT2Q9NYU1 1516 aa16.79■□□□□ 0.28
SCG2-201ENST00000305409 FGD6Q6ZV73 1430 aa16.79■□□□□ 0.28
SCG2-201ENST00000305409 JPH4Q96JJ6 628 aa16.79■□□□□ 0.28
SCG2-201ENST00000305409 CEP170Q5SW79 1584 aa16.77■□□□□ 0.28
SCG2-201ENST00000305409 DIEXFQ68CQ4 756 aaKnown RBP16.77■□□□□ 0.28
SCG2-201ENST00000305409 SETD5Q9C0A6 1442 aa16.77■□□□□ 0.27
SCG2-201ENST00000305409 EPRSP07814 1512 aaKnown RBP16.76■□□□□ 0.27
SCG2-201ENST00000305409 ZNF316A6NFI3 1004 aaPredicted RBP16.76■□□□□ 0.27
SCG2-201ENST00000305409 CHIC2Q9UKJ5 165 aa16.74■□□□□ 0.27
SCG2-201ENST00000305409 PTPRKQ15262 1439 aa16.73■□□□□ 0.27
SCG2-201ENST00000305409 KIAA0556O60303 1618 aa16.73■□□□□ 0.27
SCG2-201ENST00000305409 MYOM3Q5VTT5 1437 aa16.72■□□□□ 0.27
SCG2-201ENST00000305409 CCDC18Q5T9S5 1454 aa16.71■□□□□ 0.27
SCG2-201ENST00000305409 HECW1Q76N89 1606 aa16.71■□□□□ 0.27
SCG2-201ENST00000305409 NEUROD1Q13562 356 aa16.7■□□□□ 0.26
SCG2-201ENST00000305409 SIN3AQ96ST3 1273 aa16.7■□□□□ 0.26
SCG2-201ENST00000305409 EHBP1L1Q8N3D4 1523 aa16.7■□□□□ 0.26
SCG2-201ENST00000305409 PLB1Q6P1J6 1458 aa16.7■□□□□ 0.26
SCG2-201ENST00000305409 CLSPNQ9HAW4 1339 aa16.69■□□□□ 0.26
SCG2-201ENST00000305409 RRP7BPQ9NSQ0 103 aa16.69■□□□□ 0.26
SCG2-201ENST00000305409 NUP160Q12769 1436 aa16.68■□□□□ 0.26
SCG2-201ENST00000305409 NUP153P49790 1475 aaKnown RBP16.68■□□□□ 0.26
SCG2-201ENST00000305409 SUPT6HQ7KZ85 1726 aaKnown RBP16.67■□□□□ 0.26
SCG2-201ENST00000305409 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.65■□□□□ 0.26
SCG2-201ENST00000305409 ZNF644Q9H582 1327 aaPredicted RBP16.65■□□□□ 0.26
SCG2-201ENST00000305409 MAPKBP1O60336 1514 aa16.64■□□□□ 0.25
SCG2-201ENST00000305409 CARMIL2Q6F5E8 1435 aa16.64■□□□□ 0.25
SCG2-201ENST00000305409 PRG4Q92954 1404 aaPredicted RBP16.63■□□□□ 0.25
SCG2-201ENST00000305409 ARHGEF11O15085 1522 aa16.62■□□□□ 0.25
SCG2-201ENST00000305409 RAPGEF6Q8TEU7 1601 aa16.61■□□□□ 0.25
SCG2-201ENST00000305409 PTPN23Q9H3S7 1636 aa16.61■□□□□ 0.25
SCG2-201ENST00000305409 CDK11AQ9UQ88 783 aaPredicted RBP16.61■□□□□ 0.25
SCG2-201ENST00000305409 ZNF777Q9ULD5 760 aaPredicted RBP16.59■□□□□ 0.25
SCG2-201ENST00000305409 NAIPQ13075 1403 aa16.57■□□□□ 0.24
SCG2-201ENST00000305409 HFM1A2PYH4 1435 aa16.56■□□□□ 0.24
SCG2-201ENST00000305409 TRIM52Q96A61 297 aa16.55■□□□□ 0.24
SCG2-201ENST00000305409 CFDP1Q9UEE9 299 aaPredicted RBP16.53■□□□□ 0.24
SCG2-201ENST00000305409 PTPRGP23470 1445 aa16.52■□□□□ 0.24
SCG2-201ENST00000305409 PLEKHD1A6NEE1 506 aa16.52■□□□□ 0.23
SCG2-201ENST00000305409 TROQ12816 1431 aaPredicted RBP16.52■□□□□ 0.23
SCG2-201ENST00000305409 MIER1Q8N108 512 aa16.51■□□□□ 0.23
SCG2-201ENST00000305409 TCOF1Q13428 1488 aaKnown RBP16.51■□□□□ 0.23
SCG2-201ENST00000305409 CHD1O14646 1710 aa16.51■□□□□ 0.23
SCG2-201ENST00000305409 MIA2Q96PC5 1412 aa16.5■□□□□ 0.23
SCG2-201ENST00000305409 ATP10BO94823 1461 aa16.49■□□□□ 0.23
SCG2-201ENST00000305409 FOXD1Q16676 465 aa16.48■□□□□ 0.23
SCG2-201ENST00000305409 KIF14Q15058 1648 aa16.47■□□□□ 0.23
SCG2-201ENST00000305409 HIRIP3Q9BW71 556 aaPredicted RBP16.46■□□□□ 0.23
SCG2-201ENST00000305409 UACAQ9BZF9 1416 aa16.46■□□□□ 0.23
SCG2-201ENST00000305409 ABCC5O15440 1437 aa16.46■□□□□ 0.23
SCG2-201ENST00000305409 ERCC6L2Q5T890 1561 aa16.46■□□□□ 0.23
SCG2-201ENST00000305409 KDM6BO15054 1643 aa16.45■□□□□ 0.22
SCG2-201ENST00000305409 DAPK1P53355 1430 aa16.45■□□□□ 0.22
SCG2-201ENST00000305409 ABCA8O94911 1581 aa16.45■□□□□ 0.22
SCG2-201ENST00000305409 GPATCH8Q9UKJ3 1502 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms