RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 JPH4Q96JJ6 628 aa45.15■■■■■ 4.82
CDKN2A-201ENST00000304494 PRG4Q92954 1404 aaPredicted RBP45.1■■■■■ 4.81
CDKN2A-201ENST00000304494 KIAA0586Q9BVV6 1533 aa45.07■■■■■ 4.81
CDKN2A-201ENST00000304494 TRHP20396 242 aaPredicted RBP44.96■■■■■ 4.79
CDKN2A-201ENST00000304494 RAPGEF2Q9Y4G8 1499 aa44.87■■■■■ 4.77
CDKN2A-201ENST00000304494 IQGAP2Q13576 1575 aa44.74■■■■■ 4.75
CDKN2A-201ENST00000304494 CARMIL2Q6F5E8 1435 aa44.65■■■■■ 4.74
CDKN2A-201ENST00000304494 PRXQ9BXM0 1461 aa44.57■■■■■ 4.73
CDKN2A-201ENST00000304494 TNIKQ9UKE5 1360 aa44.52■■■■■ 4.72
CDKN2A-201ENST00000304494 PTPRGP23470 1445 aa44.51■■■■■ 4.72
CDKN2A-201ENST00000304494 NPM1P06748 294 aaKnown RBP eCLIP44.49■■■■■ 4.71
CDKN2A-201ENST00000304494 UGGT2Q9NYU1 1516 aa44.49■■■■■ 4.71
CDKN2A-201ENST00000304494 ADCY10Q96PN6 1610 aa44.46■■■■■ 4.71
CDKN2A-201ENST00000304494 DISP1Q96F81 1524 aa44.45■■■■■ 4.71
CDKN2A-201ENST00000304494 CTTNBP2Q8WZ74 1663 aa44.44■■■■■ 4.7
CDKN2A-201ENST00000304494 EEA1Q15075 1411 aa44.42■■■■■ 4.7
CDKN2A-201ENST00000304494 CSRNP3Q8WYN3 585 aa44.42■■■■■ 4.7
CDKN2A-201ENST00000304494 TTBK1Q5TCY1 1321 aaPredicted RBP44.37■■■■■ 4.69
CDKN2A-201ENST00000304494 MAPKBP1O60336 1514 aa44.33■■■■■ 4.69
CDKN2A-201ENST00000304494 KIAA0556O60303 1618 aa44.32■■■■■ 4.68
CDKN2A-201ENST00000304494 GOLGA3Q08378 1498 aa44.24■■■■■ 4.67
CDKN2A-201ENST00000304494 UACAQ9BZF9 1416 aa44.21■■■■■ 4.67
CDKN2A-201ENST00000304494 CHIC1Q5VXU3 224 aa44.2■■■■■ 4.67
CDKN2A-201ENST00000304494 UHRF1BP1LA0JNW5 1464 aa44.2■■■■■ 4.67
CDKN2A-201ENST00000304494 ABCC2Q92887 1545 aa44.19■■■■■ 4.66
CDKN2A-201ENST00000304494 KIF13AQ9H1H9 1805 aa44.18■■■■■ 4.66
CDKN2A-201ENST00000304494 ABCC10Q5T3U5 1492 aa44.18■■■■■ 4.66
CDKN2A-201ENST00000304494 FAM9AQ8IZU1 332 aaPredicted RBP44.11■■■■■ 4.65
CDKN2A-201ENST00000304494 FAM69CQ0P6D2 419 aa44.1■■■■■ 4.65
CDKN2A-201ENST00000304494 DIP2BQ9P265 1576 aa44.07■■■■■ 4.65
CDKN2A-201ENST00000304494 KDM5BQ9UGL1 1544 aa43.98■■■■■ 4.63
CDKN2A-201ENST00000304494 KIF21BO75037 1637 aa43.96■■■■■ 4.63
CDKN2A-201ENST00000304494 PLB1Q6P1J6 1458 aa43.96■■■■■ 4.63
CDKN2A-201ENST00000304494 ASXL2Q76L83 1435 aa43.94■■■■■ 4.62
CDKN2A-201ENST00000304494 ZCCHC11Q5TAX3 1644 aaKnown RBP43.87■■■■■ 4.61
CDKN2A-201ENST00000304494 ABCA8O94911 1581 aa43.86■■■■■ 4.61
CDKN2A-201ENST00000304494 SAMD9Q5K651 1589 aa43.85■■■■■ 4.61
CDKN2A-201ENST00000304494 P3H3Q8IVL6 736 aa43.82■■■■■ 4.61
CDKN2A-201ENST00000304494 GLI2P10070 1586 aa43.75■■■■■ 4.59
CDKN2A-201ENST00000304494 EPRSP07814 1512 aaKnown RBP43.68■■■■■ 4.58
CDKN2A-201ENST00000304494 RANGAP1P46060 587 aaPredicted RBP43.68■■■■■ 4.58
CDKN2A-201ENST00000304494 TSPOAP1O95153 1857 aa43.66■■■■■ 4.58
CDKN2A-201ENST00000304494 WDR7Q9Y4E6 1490 aa43.66■■■■■ 4.58
CDKN2A-201ENST00000304494 UBTFP17480 764 aaKnown RBP43.61■■■■■ 4.57
CDKN2A-201ENST00000304494 EFCAB5A4FU69 1503 aa43.61■■■■■ 4.57
CDKN2A-201ENST00000304494 EHMT2Q96KQ7 1210 aa43.56■■■■■ 4.56
CDKN2A-201ENST00000304494 FHOD3Q2V2M9 1422 aa43.56■■■■■ 4.56
CDKN2A-201ENST00000304494 RAPGEF6Q8TEU7 1601 aa43.54■■■■■ 4.56
CDKN2A-201ENST00000304494 KDM6BO15054 1643 aa43.51■■■■■ 4.56
CDKN2A-201ENST00000304494 MAP3K4Q9Y6R4 1608 aa43.51■■■■■ 4.56
CDKN2A-201ENST00000304494 ATP10BO94823 1461 aa43.49■■■■■ 4.55
CDKN2A-201ENST00000304494 PPRC1Q5VV67 1664 aaKnown RBP43.48■■■■■ 4.55
CDKN2A-201ENST00000304494 ARID3CA6NKF2 412 aa43.45■■■■■ 4.55
CDKN2A-201ENST00000304494 TEX14Q8IWB6 1497 aa43.41■■■■■ 4.54
CDKN2A-201ENST00000304494 KCNH8Q96L42 1107 aa43.41■■■■■ 4.54
CDKN2A-201ENST00000304494 NUP153P49790 1475 aaKnown RBP43.37■■■■■ 4.53
CDKN2A-201ENST00000304494 CFAP43Q8NDM7 1665 aa43.33■■■■■ 4.53
CDKN2A-201ENST00000304494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP43.31■■■■■ 4.52
CDKN2A-201ENST00000304494 HNRNPUL2Q1KMD3 747 aaKnown RBP43.31■■■■■ 4.52
CDKN2A-201ENST00000304494 CD109Q6YHK3 1445 aa43.31■■■■■ 4.52
CDKN2A-201ENST00000304494 ARHGAP35Q9NRY4 1499 aa43.26■■■■■ 4.52
CDKN2A-201ENST00000304494 MAGI3Q5TCQ9 1506 aa43.26■■■■■ 4.52
CDKN2A-201ENST00000304494 FMN1Q68DA7 1419 aa43.22■■■■■ 4.51
CDKN2A-201ENST00000304494 ABCA9Q8IUA7 1624 aa43.14■■■■■ 4.5
CDKN2A-201ENST00000304494 PLEKHD1A6NEE1 506 aa43.12■■■■■ 4.49
CDKN2A-201ENST00000304494 COL17A1Q9UMD9 1497 aaPredicted RBP43.12■■■■■ 4.49
CDKN2A-201ENST00000304494 AEBP2Q6ZN18 517 aaPredicted RBP43.08■■■■■ 4.49
CDKN2A-201ENST00000304494 HECW1Q76N89 1606 aa43.05■■■■■ 4.48
CDKN2A-201ENST00000304494 ATP1B4Q9UN42 357 aaPredicted RBP43■■■■■ 4.47
CDKN2A-201ENST00000304494 CDK13Q14004 1512 aaKnown RBP43■■■■■ 4.47
CDKN2A-201ENST00000304494 PHLDB1Q86UU1 1377 aa42.94■■■■■ 4.46
CDKN2A-201ENST00000304494 ARAP3Q8WWN8 1544 aa42.89■■■■■ 4.46
CDKN2A-201ENST00000304494 CDK11AQ9UQ88 783 aaPredicted RBP42.87■■■■■ 4.45
CDKN2A-201ENST00000304494 NEO1Q92859 1461 aa42.87■■■■■ 4.45
CDKN2A-201ENST00000304494 CLIP1P30622 1438 aa42.86■■■■■ 4.45
CDKN2A-201ENST00000304494 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP42.84■■■■■ 4.45
CDKN2A-201ENST00000304494 CASKIN1Q8WXD9 1431 aa42.8■■■■■ 4.44
CDKN2A-201ENST00000304494 PCF11O94913 1555 aaKnown RBP42.76■■■■■ 4.44
CDKN2A-201ENST00000304494 TTC37Q6PGP7 1564 aa42.76■■■■■ 4.44
CDKN2A-201ENST00000304494 CCDC18Q5T9S5 1454 aa42.71■■■■■ 4.43
CDKN2A-201ENST00000304494 KDM4FA0A1W2PPD8 638 aa42.71■■■■■ 4.43
CDKN2A-201ENST00000304494 CFAP74Q9C0B2 1584 aa42.7■■■■■ 4.43
CDKN2A-201ENST00000304494 LRRIQ1Q96JM4 1722 aa42.7■■■■■ 4.43
CDKN2A-201ENST00000304494 FANCAO15360 1455 aa42.68■■■■■ 4.42
CDKN2A-201ENST00000304494 FYCO1Q9BQS8 1478 aa42.68■■■■■ 4.42
CDKN2A-201ENST00000304494 TROQ12816 1431 aaPredicted RBP42.68■■■■■ 4.42
CDKN2A-201ENST00000304494 KIF14Q15058 1648 aa42.64■■■■■ 4.42
CDKN2A-201ENST00000304494 AKNAQ7Z591 1439 aa42.63■■■■■ 4.41
CDKN2A-201ENST00000304494 RAPGEF3O95398 923 aa42.61■■■■■ 4.41
CDKN2A-201ENST00000304494 PLCH2O75038 1416 aa42.61■■■■■ 4.41
CDKN2A-201ENST00000304494 ADGRL1O94910 1474 aa42.59■■■■■ 4.41
CDKN2A-201ENST00000304494 DENND4BO75064 1496 aaPredicted RBP42.55■■■■■ 4.4
CDKN2A-201ENST00000304494 CEP162Q5TB80 1403 aa42.55■■■■■ 4.4
CDKN2A-201ENST00000304494 FRMPD1Q5SYB0 1578 aa42.53■■■■■ 4.4
CDKN2A-201ENST00000304494 MYO5CQ9NQX4 1742 aa42.53■■■■■ 4.4
CDKN2A-201ENST00000304494 EFCAB2Q5VUJ9 269 aa42.46■■■■■ 4.39
CDKN2A-201ENST00000304494 RICTORQ6R327 1708 aa42.45■■■■■ 4.39
CDKN2A-201ENST00000304494 ARHGAP5Q13017 1502 aa42.38■■■■■ 4.37
CDKN2A-201ENST00000304494 SCAPERQ9BY12 1400 aa42.37■■■■■ 4.37
CDKN2A-201ENST00000304494 LOC105371045A0A1W2PR82 267 aa42.37■■■■■ 4.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms